Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0692200-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:35426979:35429380:1 gene:Os04g0692200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YOUNG SEEDLING STRIPE1 description:Chloroplast nucleoid-associated protein, Chloroplast development, Regulator of plastid-encoded plastid RNA polymerase (PEP) activity (Os04t0692200-01);Non-protein coding transcript. (Os04t0692200-02)
Sequence	ATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCC CGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGC CCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGT CATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAA CAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTC GGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGAC CAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAAC AACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGC ATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGC TGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTC GCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTT TGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTA CCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTAT ACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATT GCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAA TTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGA

Peptide Sequence

PEP ID	Os04t0692200-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:35426979:35429380:1 gene:Os04g0692200 transcript:Os04t0692200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YOUNG SEEDLING STRIPE1 description:Chloroplast nucleoid-associated protein, Chloroplast development, Regulator of plastid-encoded plastid RNA polymerase (PEP) activity (Os04t0692200-01);Non-protein coding transcript. (Os04t0692200-02)
Sequence	MAAMAMVSVQLTVAARPLRSRRALSVFTCAAPPRQRPPPGPTKHRRLRHDADAQPPRKRG HPPPPPPRRTRTRGPPARPQQSYTDDDEEEDDQDEEEGSFGGGTRAAAMPKPPAGFVLDD QGRCIAAASKRIVTIIDDTNNRPLECIIRRVFRSTLDHDCMLLCPVDMPVQVLKSANFSG WIAVDDDQIKEIIPSVAYALARVHMHFVESGFCYTARGGFCFPEDAIQEFHDSGDGGDSV PFEGVEICCFNLDGAHYMIYTPVDPLLFVAVKDKDGVLRIAEDELMDDPAVVGAIDEETE FTALVEEEEALLESVLGER

Transcript Sequence

Transcript ID	Os04t0692200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:35426979:35429380:1 gene:Os04g0692200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YOUNG SEEDLING STRIPE1 description:Chloroplast nucleoid-associated protein, Chloroplast development, Regulator of plastid-encoded plastid RNA polymerase (PEP) activity (Os04t0692200-01);Non-protein coding transcript. (Os04t0692200-02)
Sequence	ACAGCAGCAGCTGCTTGTACCTATCCTCCACCACCACCAGCAGCGAGTCATGGCGGCCAT GGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCT CTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCA CCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCC TCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACAC TGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCAC CCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTG CATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTT GGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTG CCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGT TGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCA TATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGA AGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGG TGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGA TCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGA ACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTT GGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGACCATGCCGCGG CCTGTATTGATGGTCGATCAGAGGCGGAGACTGCAATGGTGGGCGTCCATCGATCATCAT TCCCACCCACCAATTAAGTAGCAGAAGCAAGCTCCCCGC