Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0691900-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:35413301:35418842:1 gene:Os04g0691900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperonin Cpn60/TCP-1 family protein. (Os04t0691900-01)
Sequence	ATGAATAGTGTAGTAGAGATCATGGCGATCAGTTACCCGCCGGAGGATGGCCGGTACTAC TGTTCTTCCGTTGCCGCCGGCGATGATTCACCTGCGGCCCATCATACTAACGCCCACGAC GACTGGGACTGGGACTGGGTACCCCCACCCCCTGCTGATGCTGCTGCTGCTGCTGCGGCG GACGACGACGACGACGATGGCGATCCGACTCCTGCTGGTAGTCCTGGCAGCAGGGGCGAA GACGAGGAGGAGGAGCGGCAGAGGGCGCAGATGGTGAGCGCCATGAACGGGCAGCTGAAC ATGCTGGCCAGCCGGTTCCTGGCATCGGCGGGCGTGGAGGAGGAGTGGCTGGAGGTGGTG ACGGCGCTGTCCTGGGAGGCGGCGCTGCTGATCCAGACCCACGCCTGCACCGCCGGCAAC GACATGGACCCGGCCTCCCACGTGAAGATCAAGTGCGTGGCGTCCGGAAGGCGGCGGCAA AGCCAGGTGGTGCGGGGGCTGGTGTTCCGCAAGAACGCGGCGCACAAGCACATGCCCACC AAGTGCCACCGCCCCACCCTCCTCCTCCTCCACGGCGCCCTCGGCCTCGACTCCCATCTC GGCTTCTCCTCCTTCGACTCCATGGAGCAGGACAAGCTCATTCTCCGAGCCTCCATCTCC CACATCATCCACACCTGCAGCCCCAACGTCGTCATGGTCGAGAAGACCGTCTCCCGCGAC ATTCAGGAGCTCCTCCTGCACCACGGCGTCACTCTGCTGCTCGACATGAAGCTCCACCGC TTGCAGAGAATCGCTCGCTGTTCCGGTGCTCCCTTGCTCTCCTTCTCCCAGCTTCTCCAT GATTGCCCCAACCACCTCAAGCACTGCGACTACTTCCACATCGACAAGTTCTTCGAGGAC CATAACACCACCACCACTACTAGTGCTGCTGCCCTGAACAAGCCATCTAAAACATTGATG TTCTTGGAAGGCTTTTCCAACCCATTGGGATGCACCATACTGCTCAGAGGCGCAAGCACC CAAGAACTGAAGAAAATCAAGCAAGTCTTGCACTACACAATATTCGCTGCATACCATCTG GTTGTTGAGACATCCTTCTTTGAAGATCAGAGGGTATTCTTGAATGATACAAATGTTGAC GGGACACCACAAATCACTCATCAGACTTCCATTGTCTCAAATCGTTCACTTCCTACTGAT TATGATGTCACTTGTACTAGCAGGGGATCATTACTGGAATACCATGATGGGGATCACAAG GCTACAGTTCCTTTCACAAATAAACCAGACTCGTACACACAAGATGAGGGTACAGCCATC CACTGTGAAGCACCTCCATCTGAAAACCTGCTGTCCTCAGTCTCCGGATCACTCAGAAGA TTCATTGATATATTCCGTTATCAGAATATTTATTTACCTGTAACTTCTTCTCAAGATACA ACTGGTCATCAGAATGAACAAGATACTGAAACCAGCCAAGAAACGGCGTCTGATACCTTA ACAAAGGATCATTCTTGTGAGTATATGGATCAGTTAAATGATCTCCAGGAACAAGTATTC GCCAAAACCAACCAAAAAATGTCACAGCCTGATCCTTTCGGTACTGAAAAACATCAGCAG AATGTGGAACAGTACAGGGCCGGCGAAAATATAAATTCAGACACAGATGAGGCTGATGAT GTAATGGATTCTCAGAGCATACTCATCTTGTTATCCAGCCAATGTGTTACGAAGCAGGTT GTCTGTGAGGAGAGCCATCTATACCGCATAAACTATTATGGGAATTTCGATGTCTCCTTA GGACGATATTTGCAAGACATTTTGCAGAATCAGAACCTAAGCTGTTCCTCATGTGGAGAG CCTCCAGATGCTCACATGTACTCTTACACCCACCGCAATGGAAATCTAACTATTAATGTG AGGCGTTTGCTGCCTCAGCATCATTTGCCTGGTGAATCTGAAGGAAAAATTTGGATGTGG ACTAGATGTCTAAGATGTGAGCATGAGAGAGGGATATCCAAATCATCTCGGAGAGTGCTA ATATCAACTGAAGCGCGTAATCTCTCCTTTGGCAAGTTCCTTGAACTCAGTTTCTCAAGC CACTCTGCTGCTAGAAGGCTATCAGTTTGTGGGCATTTGGTCAACAGGGACTGCTTGCGA TATTTTGGGTTGGGTTCCAAAGTTGCAAAGTTCCAATATTCATCAGTTGAAATTTACACT GCCTGCAAACCGCAACGAACCCTTGAGTTTCACAATCCCGATATGCGTGAGTGGTTCGAG CAAGAGGGAAGAAATGTTCTTGCGAGAGGAGTTAAGCTTTTCTATGAAGTTTCTAGCTTA ATACAGCACATGAAGATTTTCTCTGAGGTGGCAATTAACTGTGGAGACTCTCTTCCTGTC AAAGAAGTTTCCCAACTTGAAGAGATGCTAATTGAAGAAAAAGCTCAGTTTGTGGATTCT CTGGTGAAGGCTGTTGATGAAAGCGGGATGTCTAGCTCCTCTGTGAATGAGATTCTTGGT GTAAATTGTCTCTACCAGGATCTTCTGATTCGACTGTACGTGTGGGACCGTCGTTTCCAT CAAATTGTTGAGTGTAAGTCTGGAAGAATGGCTAATTGTGTCGGCAAGAAGGAAGCTGCT GAATTTGCCGGTGAACCAGCTGCAACTGGTGAAAGTGCAGTGCCCTTTGAGAATGGATAT ATCAAGGAAATGCAGTACAGCAGCGAAACCTTAACTGATGAAAATTCACGGCGTGAGGAG CAACATATCACAAAAGTGCCTTCTTTCAGAGTCTTGGAAGGTACAGATACGCAGTTGATA AATCCTGAATGTGGGGATAACAGGGAAACATGGATTTGGAGTCCATTGCACGAGTTAAGA GAGAGTTACAGGCATGAACTGCAGGCCGGGTATTTGGAAAGATTCGAACTTGTCAACAAC TATTCTCCATCTCATCTATCCCCCCTGCACAAACAATCATCTGCTGAGTTCATAGTTGGT CCAGGTGGCAATGTGTTGTGCATATCAGAGGATGAAATATCCAGCATAATATCCCGCGCA CTGGCCATATCGGAGGAACGTCGCCATCTTTTACTAGATGCTCTCATGGTTGAAGGTGAG GCAGCCTACAGCAGGGGGAGTGAGAGCTCTAAGATGGAGAAATCTTACAGCTCATTATCT GAAGCTTCTTCGGCCTCTTCGTCGTGGTCATCTATTGGATCTTCAGACTCAGATGCAAGC TTTTCATCTGACGACCTCTTCTCCAGCTATGATAGCTCACTTCTGTCATCCTTACTTCAT CCTGAAGTATCTGTCAATGGGAAATCATCTCTCAAAGGGAAATACTCGGTTATTTGTGTA CATGCCAATCAGTTTTACACCCTTCGGAAGAAATGCTGCCCATCTGAGCTTGCATATATC ACTTCCTTGAGCCGGTGCATGAAGTGGGATGCTCAAGGTGGAAAAAGTAAGGCTTTCTTT GCAAAAACATTGGATGACAGGTTCATCATCAAGCAAATAAAGAAGACAGAGTTTGAATCC TTCATAGAATTCGCACCCGATTACTTTAAGCATGTGTATCATTCTCTCGACACTGGGAGC CAAACTTGTCTTGCCAAAATTTTAGGAATCTATCAGGTTAAGCAAATCAGACATGGCAAG GAAGTGAAGCTTGATCTGATGGTGATGGAAAATCTTCTCTTCGGACACAAATTGTCAAGG ATATATGATCTCAAAGGTGTTGTTTTCTCCAGACATGTCTCTGATTCGAATGACCATGGA ACTGTTTACTTGGATCAAAACTTTGTCGATGATATGCGTGTTTCCCCTATATATGTTGGT GGAAGAACGAAACATCTCTTGCAGCGGGCAATCTGGAACGACACAGCTTTTCTCACTTCA ATTAATGTTATGGACTACTCGTTACTGGTGGGAGTGGACAAAGAAAAGCATGAGTTTGTA TTTGGCATCATAGATTACCTAAGGCAGTATACATGGGACAAGCAACTGGAGACGTGGGTG AAAACTTCTTTGGTAGTGCCAAAGAATGCTTCACCAACAGTAATCTCACCCAAAGAGTAC AAGAAGAGGTTTAGGAAGTTCATGGCCAAGTATTTCCTGACAGTTCCAGACGATTGGAGT ACATAG

Peptide Sequence

PEP ID	Os04t0691900-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:35413301:35418842:1 gene:Os04g0691900 transcript:Os04t0691900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperonin Cpn60/TCP-1 family protein. (Os04t0691900-01)
Sequence	MNSVVEIMAISYPPEDGRYYCSSVAAGDDSPAAHHTNAHDDWDWDWVPPPPADAAAAAAA DDDDDDGDPTPAGSPGSRGEDEEEERQRAQMVSAMNGQLNMLASRFLASAGVEEEWLEVV TALSWEAALLIQTHACTAGNDMDPASHVKIKCVASGRRRQSQVVRGLVFRKNAAHKHMPT KCHRPTLLLLHGALGLDSHLGFSSFDSMEQDKLILRASISHIIHTCSPNVVMVEKTVSRD IQELLLHHGVTLLLDMKLHRLQRIARCSGAPLLSFSQLLHDCPNHLKHCDYFHIDKFFED HNTTTTTSAAALNKPSKTLMFLEGFSNPLGCTILLRGASTQELKKIKQVLHYTIFAAYHL VVETSFFEDQRVFLNDTNVDGTPQITHQTSIVSNRSLPTDYDVTCTSRGSLLEYHDGDHK ATVPFTNKPDSYTQDEGTAIHCEAPPSENLLSSVSGSLRRFIDIFRYQNIYLPVTSSQDT TGHQNEQDTETSQETASDTLTKDHSCEYMDQLNDLQEQVFAKTNQKMSQPDPFGTEKHQQ NVEQYRAGENINSDTDEADDVMDSQSILILLSSQCVTKQVVCEESHLYRINYYGNFDVSL GRYLQDILQNQNLSCSSCGEPPDAHMYSYTHRNGNLTINVRRLLPQHHLPGESEGKIWMW TRCLRCEHERGISKSSRRVLISTEARNLSFGKFLELSFSSHSAARRLSVCGHLVNRDCLR YFGLGSKVAKFQYSSVEIYTACKPQRTLEFHNPDMREWFEQEGRNVLARGVKLFYEVSSL IQHMKIFSEVAINCGDSLPVKEVSQLEEMLIEEKAQFVDSLVKAVDESGMSSSSVNEILG VNCLYQDLLIRLYVWDRRFHQIVECKSGRMANCVGKKEAAEFAGEPAATGESAVPFENGY IKEMQYSSETLTDENSRREEQHITKVPSFRVLEGTDTQLINPECGDNRETWIWSPLHELR ESYRHELQAGYLERFELVNNYSPSHLSPLHKQSSAEFIVGPGGNVLCISEDEISSIISRA LAISEERRHLLLDALMVEGEAAYSRGSESSKMEKSYSSLSEASSASSSWSSIGSSDSDAS FSSDDLFSSYDSSLLSSLLHPEVSVNGKSSLKGKYSVICVHANQFYTLRKKCCPSELAYI TSLSRCMKWDAQGGKSKAFFAKTLDDRFIIKQIKKTEFESFIEFAPDYFKHVYHSLDTGS QTCLAKILGIYQVKQIRHGKEVKLDLMVMENLLFGHKLSRIYDLKGVVFSRHVSDSNDHG TVYLDQNFVDDMRVSPIYVGGRTKHLLQRAIWNDTAFLTSINVMDYSLLVGVDKEKHEFV FGIIDYLRQYTWDKQLETWVKTSLVVPKNASPTVISPKEYKKRFRKFMAKYFLTVPDDWS T

Transcript Sequence

Transcript ID	Os04t0691900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:35413301:35418842:1 gene:Os04g0691900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperonin Cpn60/TCP-1 family protein. (Os04t0691900-01)
Sequence	ATGCATATTTTGTTCCAGATTATCGATGGTGGACAGGACAGGAGCCAACTGCAACAAGAT ATACTCATTCTCGATCGATTTCTAAGAGATACCTAGACACTTGCTCCTCCTGCTATAAGA TGAATAGTGTAGTAGAGATCATGGCGATCAGTTACCCGCCGGAGGATGGCCGGTACTACT GTTCTTCCGTTGCCGCCGGCGATGATTCACCTGCGGCCCATCATACTAACGCCCACGACG ACTGGGACTGGGACTGGGTACCCCCACCCCCTGCTGATGCTGCTGCTGCTGCTGCGGCGG ACGACGACGACGACGATGGCGATCCGACTCCTGCTGGTAGTCCTGGCAGCAGGGGCGAAG ACGAGGAGGAGGAGCGGCAGAGGGCGCAGATGGTGAGCGCCATGAACGGGCAGCTGAACA TGCTGGCCAGCCGGTTCCTGGCATCGGCGGGCGTGGAGGAGGAGTGGCTGGAGGTGGTGA CGGCGCTGTCCTGGGAGGCGGCGCTGCTGATCCAGACCCACGCCTGCACCGCCGGCAACG ACATGGACCCGGCCTCCCACGTGAAGATCAAGTGCGTGGCGTCCGGAAGGCGGCGGCAAA GCCAGGTGGTGCGGGGGCTGGTGTTCCGCAAGAACGCGGCGCACAAGCACATGCCCACCA AGTGCCACCGCCCCACCCTCCTCCTCCTCCACGGCGCCCTCGGCCTCGACTCCCATCTCG GCTTCTCCTCCTTCGACTCCATGGAGCAGGACAAGCTCATTCTCCGAGCCTCCATCTCCC ACATCATCCACACCTGCAGCCCCAACGTCGTCATGGTCGAGAAGACCGTCTCCCGCGACA TTCAGGAGCTCCTCCTGCACCACGGCGTCACTCTGCTGCTCGACATGAAGCTCCACCGCT TGCAGAGAATCGCTCGCTGTTCCGGTGCTCCCTTGCTCTCCTTCTCCCAGCTTCTCCATG ATTGCCCCAACCACCTCAAGCACTGCGACTACTTCCACATCGACAAGTTCTTCGAGGACC ATAACACCACCACCACTACTAGTGCTGCTGCCCTGAACAAGCCATCTAAAACATTGATGT TCTTGGAAGGCTTTTCCAACCCATTGGGATGCACCATACTGCTCAGAGGCGCAAGCACCC AAGAACTGAAGAAAATCAAGCAAGTCTTGCACTACACAATATTCGCTGCATACCATCTGG TTGTTGAGACATCCTTCTTTGAAGATCAGAGGGTATTCTTGAATGATACAAATGTTGACG GGACACCACAAATCACTCATCAGACTTCCATTGTCTCAAATCGTTCACTTCCTACTGATT ATGATGTCACTTGTACTAGCAGGGGATCATTACTGGAATACCATGATGGGGATCACAAGG CTACAGTTCCTTTCACAAATAAACCAGACTCGTACACACAAGATGAGGGTACAGCCATCC ACTGTGAAGCACCTCCATCTGAAAACCTGCTGTCCTCAGTCTCCGGATCACTCAGAAGAT TCATTGATATATTCCGTTATCAGAATATTTATTTACCTGTAACTTCTTCTCAAGATACAA CTGGTCATCAGAATGAACAAGATACTGAAACCAGCCAAGAAACGGCGTCTGATACCTTAA CAAAGGATCATTCTTGTGAGTATATGGATCAGTTAAATGATCTCCAGGAACAAGTATTCG CCAAAACCAACCAAAAAATGTCACAGCCTGATCCTTTCGGTACTGAAAAACATCAGCAGA ATGTGGAACAGTACAGGGCCGGCGAAAATATAAATTCAGACACAGATGAGGCTGATGATG TAATGGATTCTCAGAGCATACTCATCTTGTTATCCAGCCAATGTGTTACGAAGCAGGTTG TCTGTGAGGAGAGCCATCTATACCGCATAAACTATTATGGGAATTTCGATGTCTCCTTAG GACGATATTTGCAAGACATTTTGCAGAATCAGAACCTAAGCTGTTCCTCATGTGGAGAGC CTCCAGATGCTCACATGTACTCTTACACCCACCGCAATGGAAATCTAACTATTAATGTGA GGCGTTTGCTGCCTCAGCATCATTTGCCTGGTGAATCTGAAGGAAAAATTTGGATGTGGA CTAGATGTCTAAGATGTGAGCATGAGAGAGGGATATCCAAATCATCTCGGAGAGTGCTAA TATCAACTGAAGCGCGTAATCTCTCCTTTGGCAAGTTCCTTGAACTCAGTTTCTCAAGCC ACTCTGCTGCTAGAAGGCTATCAGTTTGTGGGCATTTGGTCAACAGGGACTGCTTGCGAT ATTTTGGGTTGGGTTCCAAAGTTGCAAAGTTCCAATATTCATCAGTTGAAATTTACACTG CCTGCAAACCGCAACGAACCCTTGAGTTTCACAATCCCGATATGCGTGAGTGGTTCGAGC AAGAGGGAAGAAATGTTCTTGCGAGAGGAGTTAAGCTTTTCTATGAAGTTTCTAGCTTAA TACAGCACATGAAGATTTTCTCTGAGGTGGCAATTAACTGTGGAGACTCTCTTCCTGTCA AAGAAGTTTCCCAACTTGAAGAGATGCTAATTGAAGAAAAAGCTCAGTTTGTGGATTCTC TGGTGAAGGCTGTTGATGAAAGCGGGATGTCTAGCTCCTCTGTGAATGAGATTCTTGGTG TAAATTGTCTCTACCAGGATCTTCTGATTCGACTGTACGTGTGGGACCGTCGTTTCCATC AAATTGTTGAGTGTAAGTCTGGAAGAATGGCTAATTGTGTCGGCAAGAAGGAAGCTGCTG AATTTGCCGGTGAACCAGCTGCAACTGGTGAAAGTGCAGTGCCCTTTGAGAATGGATATA TCAAGGAAATGCAGTACAGCAGCGAAACCTTAACTGATGAAAATTCACGGCGTGAGGAGC AACATATCACAAAAGTGCCTTCTTTCAGAGTCTTGGAAGGTACAGATACGCAGTTGATAA ATCCTGAATGTGGGGATAACAGGGAAACATGGATTTGGAGTCCATTGCACGAGTTAAGAG AGAGTTACAGGCATGAACTGCAGGCCGGGTATTTGGAAAGATTCGAACTTGTCAACAACT ATTCTCCATCTCATCTATCCCCCCTGCACAAACAATCATCTGCTGAGTTCATAGTTGGTC CAGGTGGCAATGTGTTGTGCATATCAGAGGATGAAATATCCAGCATAATATCCCGCGCAC TGGCCATATCGGAGGAACGTCGCCATCTTTTACTAGATGCTCTCATGGTTGAAGGTGAGG CAGCCTACAGCAGGGGGAGTGAGAGCTCTAAGATGGAGAAATCTTACAGCTCATTATCTG AAGCTTCTTCGGCCTCTTCGTCGTGGTCATCTATTGGATCTTCAGACTCAGATGCAAGCT TTTCATCTGACGACCTCTTCTCCAGCTATGATAGCTCACTTCTGTCATCCTTACTTCATC CTGAAGTATCTGTCAATGGGAAATCATCTCTCAAAGGGAAATACTCGGTTATTTGTGTAC ATGCCAATCAGTTTTACACCCTTCGGAAGAAATGCTGCCCATCTGAGCTTGCATATATCA CTTCCTTGAGCCGGTGCATGAAGTGGGATGCTCAAGGTGGAAAAAGTAAGGCTTTCTTTG CAAAAACATTGGATGACAGGTTCATCATCAAGCAAATAAAGAAGACAGAGTTTGAATCCT TCATAGAATTCGCACCCGATTACTTTAAGCATGTGTATCATTCTCTCGACACTGGGAGCC AAACTTGTCTTGCCAAAATTTTAGGAATCTATCAGGTTAAGCAAATCAGACATGGCAAGG AAGTGAAGCTTGATCTGATGGTGATGGAAAATCTTCTCTTCGGACACAAATTGTCAAGGA TATATGATCTCAAAGGTGTTGTTTTCTCCAGACATGTCTCTGATTCGAATGACCATGGAA CTGTTTACTTGGATCAAAACTTTGTCGATGATATGCGTGTTTCCCCTATATATGTTGGTG GAAGAACGAAACATCTCTTGCAGCGGGCAATCTGGAACGACACAGCTTTTCTCACTTCAA TTAATGTTATGGACTACTCGTTACTGGTGGGAGTGGACAAAGAAAAGCATGAGTTTGTAT TTGGCATCATAGATTACCTAAGGCAGTATACATGGGACAAGCAACTGGAGACGTGGGTGA AAACTTCTTTGGTAGTGCCAAAGAATGCTTCACCAACAGTAATCTCACCCAAAGAGTACA AGAAGAGGTTTAGGAAGTTCATGGCCAAGTATTTCCTGACAGTTCCAGACGATTGGAGTA CATAGATAGAAACGTCTGGGGTCCTGCAAATCCTGTCCATTATCTGTTTTGTTTGTACAC AGTAGAATGGAACGCTCACTTGTTTAAAGTTCTCCAATAGTTTGCAGTTTTAAGGCAAAA TTTTGGAGCGAGGCCCAAATACATGATCAAAATCATTGATCCCTCACATGTATTGGTTAC TGGTTTGTGGTAGAAAAAAAAGTTTGTATC