Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0689300-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:35267299:35270253:-1 gene:Os04g0689300 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os04t0689300-01)
Sequence

ATGGCCGCCGCGTCGACGTTCCCTCTGGCTCTGCTGCTCGCCATTGTTGCCGCATGCTGC
GTCGCCGGGGGCGAGGGCGGCGCGCTGGTGGGCGACACGTGCACGGCGTCGTCGGCGTCG
AGCTGCGGGGCGGGGATGCGGTGCGCCACCTGCTCACCGCTGCCCGGGATGGGACCACCC
GTGTGCTCGCGGACAACGCCCCTTGACCCCAAGGCGCACGGGACGGACCTCGCGTTCAAC
CGGTACACATGGCTCACGACGCACAACTCCTTCGCCATCGTTGGCTCGCCGTCGCGCACC
GGCACGCCCATCATCGCGCCGCCCAACCAGGAGGACACCGTCACCGCGCAGCTCAAGAAT
GGCGTGAGGGGCCTGATGCTCGACGCGTATGACTTCCAGAACGAAGTGTGGCTCTGCCAC
TCGTTCGGCGGGAAATGCTACAACTTCGCTGCCTATCAACGCGCGATGGACGTGCTAAAG
GAGATTGGGGCGTTCCTGGATGCGAACCCATCGGAGGTGATAACGGTGTTCGTGGAGGAC
TACGCTGGTCCGGGGAGCCTGGGCAAAGTGGTGGGCGGGTCAGGGCTGAGCAAGTACCTG
TTCCCGCCTGCCAAGATGCCCAAGGGCGGAGGCGACTGGCCTCTGCTCAAGGACATGATC
GCCCAGAACCACCGCCTGCTCATGTTCACGTCCAAGAGGGGCAAGGACGGCAGCGACGGG
TTGGCGTACGAGTGGGACTACGTCCTGGAAACCCAGTATGGGAACGATGGGCTGGTGGGC
GGGTCGTGCCCGAAGCGAGCGGAGTCGATGGCGATGGACTCCACCAAGCAGTCGCTGATC
CTGATGAACTTCTTCAGCACCAACCCGAGCCAGAGCTGGGCCTGCGGCAACAACTCCGCG
CCGCTCGTCGCCAAGCTCAAGGCCTGCTACGACGCCTCCGCCAAGCGCTGGCCCAACTTC
ATCGCCGTCGATTACTACATGAGGAGTAAGGGCGGTGGAGCTCCGTTGGCGACCGACGTG
GCCAACGGCCGCCAGCAATGCGGCTGCGACAGCATAGCATACTGCAAGCCTGGGTCAGCG
TTCGGGAGCTGCAGTTTGTCATCGCCTCCTGCAGCGCCACCAAAGATGGCTGCTGCTTCA
CCGCCGGCAGCGGCTCCAGCACCAGCACCAGAGATGGCTCCTAGTTCACCGCCGGCAGAA
CCACCAGAGACGGCGACGGAGGCTGCTGGTTCAGCGGTGCGACCGGCGTCCATCAAGTTA
GAGAAGGACGACACGACGGGCACATCGCCAGCGGACACCGCCAAATCCTCCTCCTCTAAT
CGCTCTCCTCATCCGTCCAGCTGCAGCTTCCTCTTTGGATTATTATTGCCATCTCTTCTC
CTCCTCCACCTTTATATTTCAGATTGA

Peptide Sequence

PEP ID

Os04t0689300-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:35267299:35270253:-1 gene:Os04g0689300 transcript:Os04t0689300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os04t0689300-01)
Sequence

MAAASTFPLALLLAIVAACCVAGGEGGALVGDTCTASSASSCGAGMRCATCSPLPGMGPP
VCSRTTPLDPKAHGTDLAFNRYTWLTTHNSFAIVGSPSRTGTPIIAPPNQEDTVTAQLKN
GVRGLMLDAYDFQNEVWLCHSFGGKCYNFAAYQRAMDVLKEIGAFLDANPSEVITVFVED
YAGPGSLGKVVGGSGLSKYLFPPAKMPKGGGDWPLLKDMIAQNHRLLMFTSKRGKDGSDG
LAYEWDYVLETQYGNDGLVGGSCPKRAESMAMDSTKQSLILMNFFSTNPSQSWACGNNSA
PLVAKLKACYDASAKRWPNFIAVDYYMRSKGGGAPLATDVANGRQQCGCDSIAYCKPGSA
FGSCSLSSPPAAPPKMAAASPPAAAPAPAPEMAPSSPPAEPPETATEAAGSAVRPASIKL
EKDDTTGTSPADTAKSSSSNRSPHPSSCSFLFGLLLPSLLLLHLYISD

Transcript Sequence

Transcript ID

Os04t0689300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:35267299:35270253:-1 gene:Os04g0689300 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os04t0689300-01)
Sequence

GCACCAACGCGCGCAACGGATGAACCATCCGCCTGCATCGATCTTCCTGCGATGGCCGCC
GCGTCGACGTTCCCTCTGGCTCTGCTGCTCGCCATTGTTGCCGCATGCTGCGTCGCCGGG
GGCGAGGGCGGCGCGCTGGTGGGCGACACGTGCACGGCGTCGTCGGCGTCGAGCTGCGGG
GCGGGGATGCGGTGCGCCACCTGCTCACCGCTGCCCGGGATGGGACCACCCGTGTGCTCG
CGGACAACGCCCCTTGACCCCAAGGCGCACGGGACGGACCTCGCGTTCAACCGGTACACA
TGGCTCACGACGCACAACTCCTTCGCCATCGTTGGCTCGCCGTCGCGCACCGGCACGCCC
ATCATCGCGCCGCCCAACCAGGAGGACACCGTCACCGCGCAGCTCAAGAATGGCGTGAGG
GGCCTGATGCTCGACGCGTATGACTTCCAGAACGAAGTGTGGCTCTGCCACTCGTTCGGC
GGGAAATGCTACAACTTCGCTGCCTATCAACGCGCGATGGACGTGCTAAAGGAGATTGGG
GCGTTCCTGGATGCGAACCCATCGGAGGTGATAACGGTGTTCGTGGAGGACTACGCTGGT
CCGGGGAGCCTGGGCAAAGTGGTGGGCGGGTCAGGGCTGAGCAAGTACCTGTTCCCGCCT
GCCAAGATGCCCAAGGGCGGAGGCGACTGGCCTCTGCTCAAGGACATGATCGCCCAGAAC
CACCGCCTGCTCATGTTCACGTCCAAGAGGGGCAAGGACGGCAGCGACGGGTTGGCGTAC
GAGTGGGACTACGTCCTGGAAACCCAGTATGGGAACGATGGGCTGGTGGGCGGGTCGTGC
CCGAAGCGAGCGGAGTCGATGGCGATGGACTCCACCAAGCAGTCGCTGATCCTGATGAAC
TTCTTCAGCACCAACCCGAGCCAGAGCTGGGCCTGCGGCAACAACTCCGCGCCGCTCGTC
GCCAAGCTCAAGGCCTGCTACGACGCCTCCGCCAAGCGCTGGCCCAACTTCATCGCCGTC
GATTACTACATGAGGAGTAAGGGCGGTGGAGCTCCGTTGGCGACCGACGTGGCCAACGGC
CGCCAGCAATGCGGCTGCGACAGCATAGCATACTGCAAGCCTGGGTCAGCGTTCGGGAGC
TGCAGTTTGTCATCGCCTCCTGCAGCGCCACCAAAGATGGCTGCTGCTTCACCGCCGGCA
GCGGCTCCAGCACCAGCACCAGAGATGGCTCCTAGTTCACCGCCGGCAGAACCACCAGAG
ACGGCGACGGAGGCTGCTGGTTCAGCGGTGCGACCGGCGTCCATCAAGTTAGAGAAGGAC
GACACGACGGGCACATCGCCAGCGGACACCGCCAAATCCTCCTCCTCTAATCGCTCTCCT
CATCCGTCCAGCTGCAGCTTCCTCTTTGGATTATTATTGCCATCTCTTCTCCTCCTCCAC
CTTTATATTTCAGATTGATCGATGAGGCTTTTATCCATCTCATCAATTCGATGGTGCTAA
TATACTTTTATTCATGGATGGACTCCATGATCC