Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0685400-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:35011024:35012050:-1 gene:Os04g0685400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os04t0685400-01);Harpin-induced 1 domain containing protein. (Os04t0685400-02)
Sequence

ATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTG
CACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTG
GTGGTGTGGCTGGCGCTGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTG
CTGTGCCTCAACGTGACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGCGACG
GTGGCGGCGCGCAACGACAACGGCCGCGTGGGCGTCTACTACGACAAGGTGGACGTGTAC
GCGCAGTACAAGGACGTGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGC
CACTACGACCAGTCCGTCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCC
CCCAACCTCGCCGTCGCCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATC
CGCCTCGACGGCTGGGTCCGATGGAAGGTCGGCACCTGGATCTCCGGCCACTACCACCTC
CGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAAC
TACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTC
TAG

Peptide Sequence

PEP ID

Os04t0685400-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:35011024:35012050:-1 gene:Os04g0685400 transcript:Os04t0685400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os04t0685400-01);Harpin-induced 1 domain containing protein. (Os04t0685400-02)
Sequence

MSVIKDCGGHKGCECEKEKVHRRLCWALVALVLLTLFIVLVVWLALRPHKPRFYLQDLSV
LCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQG
HYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHL
RVNCPALLTVNDGKGSYGVNYGGGDGYFRFQQAAACAVDV

Transcript Sequence

Transcript ID

Os04t0685400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:35011024:35012050:-1 gene:Os04g0685400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os04t0685400-01);Harpin-induced 1 domain containing protein. (Os04t0685400-02)
Sequence

TCCCAGCCATTTCGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGGATTGT
GGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCG
CTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGCTGCGG
CCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTGACGCCG
CCGGCGTCCGCCTACCTCTTCACCACCATGCAGGCGACGGTGGCGGCGCGCAACGACAAC
GGCCGCGTGGGCGTCTACTACGACAAGGTGGACGTGTACGCGCAGTACAAGGACGTGGCC
ATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCGTCTGG
TCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCGCCCTC
GCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGCCTCGACGGCTGGGTCCGA
TGGAAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCGCCCTC
CTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTAC
TTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCA
TTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCT
TGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATG
ATAGTACTAGCTTCTTAATTTAGACCGTAGTTGGTTTGGAGCTAGTGTAGCTTGGAGTGA
AAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGT
GAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGTACATC
AATAATT