Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0685100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:34992137:34994799:-1 gene:Os04g0685100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal biogenesis regulatory protein family protein. (Os04t0685100-01)
Sequence

ATGGCGGAAGCAGCAGCAGCACCTCCCGCCGCCGCCGCCACCAACTACGAGGTGGACCTC
GGCAACCTCATGGCCTACGACCCGTCGCATCACCTCCCCGCCGCATCCTCCTCCAGGGAG
GAGCTGAGGGAGGAGTGCCTGCGGAAGGGGACGGAGCTGGCGCAGGCGGTCGCCGACGCC
CTCTTCGCGCTGCCGGCCACCGAGGACCGCGACGGCCCCATGGTCCGCCTCCCGCCGCCC
ACCACCCGCTTCCCCCGCGAGAAGCATCTACCAAGGCCGAAGCCCCCTACTAAATGGGAG
CAGTTTGCGAAGATGAAAGGGATCACAAAGCACAAGAAGAACAAACGTGAATGGGACGAG
CAAACTCAAACCTGGAAGCGGACTTATGGCTATGACCGTGTTAATGATGATAAAGACATT
CCAATCATTGAAGCCAAGGCGACAGATGAGCCTGGTGTTGATCCTTTTGCTCAAAGAAGG
GAAGATAAGAAGAAGCATGTTGAAAAGCAAGAAAAGAACAGACTAGAAAACTTGAAAAAA
GCAGCCAAAGTTGGTGCTTTGCCTAGTCATATACAACTTGCTGCAACAGCGTTGCCTATC
ACGGGAACTAAAGCAGACATACCCAAAAAATCTAGAAAGAAAGATCTCGAGGATGTTGCT
GGCATGGCTTCATCAGCAACAGCTAGTGGTGGGAAGTTCGATGAAAAATTGCCTGGCGAG
AAACCTCCAAAAAATCCTGGCAAACATAGAAAGTTCCTCCCTGTTGTTGAAGGAAAAGGA
ATGGGCAACCAGGAGAAACAGCAAAATGACAAAATCTTGAATGCTCTGCTGGCCAAAAGT
TCTGAGGATCAAATGGATGTTGGCAGGGCAATTACGATGTACAAGGTGAAGAAGGAGAAA
CAAAGGAGGAAAGATAAGGAAAAGTCTTCTTCATCGAACAAGCTGAAGCCCCAGAAGAAA
ACACTCAAGAAATCTTCGAAGAAAAAGGCTTAG

Peptide Sequence

PEP ID

Os04t0685100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:34992137:34994799:-1 gene:Os04g0685100 transcript:Os04t0685100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal biogenesis regulatory protein family protein. (Os04t0685100-01)
Sequence

MAEAAAAPPAAAATNYEVDLGNLMAYDPSHHLPAASSSREELREECLRKGTELAQAVADA
LFALPATEDRDGPMVRLPPPTTRFPREKHLPRPKPPTKWEQFAKMKGITKHKKNKREWDE
QTQTWKRTYGYDRVNDDKDIPIIEAKATDEPGVDPFAQRREDKKKHVEKQEKNRLENLKK
AAKVGALPSHIQLAATALPITGTKADIPKKSRKKDLEDVAGMASSATASGGKFDEKLPGE
KPPKNPGKHRKFLPVVEGKGMGNQEKQQNDKILNALLAKSSEDQMDVGRAITMYKVKKEK
QRRKDKEKSSSSNKLKPQKKTLKKSSKKKA

Transcript Sequence

Transcript ID

Os04t0685100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:34992137:34994799:-1 gene:Os04g0685100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal biogenesis regulatory protein family protein. (Os04t0685100-01)
Sequence

ACCCCTCGTCTGTCTCTCTTCCCCAAACCCTCCACCCAACCCGCCTCCTCGAGCGACGGC
GCAGCCATGGCGGAAGCAGCAGCAGCACCTCCCGCCGCCGCCGCCACCAACTACGAGGTG
GACCTCGGCAACCTCATGGCCTACGACCCGTCGCATCACCTCCCCGCCGCATCCTCCTCC
AGGGAGGAGCTGAGGGAGGAGTGCCTGCGGAAGGGGACGGAGCTGGCGCAGGCGGTCGCC
GACGCCCTCTTCGCGCTGCCGGCCACCGAGGACCGCGACGGCCCCATGGTCCGCCTCCCG
CCGCCCACCACCCGCTTCCCCCGCGAGAAGCATCTACCAAGGCCGAAGCCCCCTACTAAA
TGGGAGCAGTTTGCGAAGATGAAAGGGATCACAAAGCACAAGAAGAACAAACGTGAATGG
GACGAGCAAACTCAAACCTGGAAGCGGACTTATGGCTATGACCGTGTTAATGATGATAAA
GACATTCCAATCATTGAAGCCAAGGCGACAGATGAGCCTGGTGTTGATCCTTTTGCTCAA
AGAAGGGAAGATAAGAAGAAGCATGTTGAAAAGCAAGAAAAGAACAGACTAGAAAACTTG
AAAAAAGCAGCCAAAGTTGGTGCTTTGCCTAGTCATATACAACTTGCTGCAACAGCGTTG
CCTATCACGGGAACTAAAGCAGACATACCCAAAAAATCTAGAAAGAAAGATCTCGAGGAT
GTTGCTGGCATGGCTTCATCAGCAACAGCTAGTGGTGGGAAGTTCGATGAAAAATTGCCT
GGCGAGAAACCTCCAAAAAATCCTGGCAAACATAGAAAGTTCCTCCCTGTTGTTGAAGGA
AAAGGAATGGGCAACCAGGAGAAACAGCAAAATGACAAAATCTTGAATGCTCTGCTGGCC
AAAAGTTCTGAGGATCAAATGGATGTTGGCAGGGCAATTACGATGTACAAGGTGAAGAAG
GAGAAACAAAGGAGGAAAGATAAGGAAAAGTCTTCTTCATCGAACAAGCTGAAGCCCCAG
AAGAAAACACTCAAGAAATCTTCGAAGAAAAAGGCTTAGGTTAATTACATTCTTCGGACC
TGCTGTAGGAGGTGAGCATAGTTTTCGAGACTCAAGGAGAATTGGCAAATTTTGCTGTCT
GTTTGTCCAATTTGAACACATCGGAGAAATCTTGTTATTGCAATTGTTGGTTATGATGTA
AGAACCTGAATGCTATTATAACATGGTTGTCATGAATATGCAATACATATGCATTATAAT
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