Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0684900-02
CDS Infomation	cds chromosome:IRGSP-1.0:4:34980601:34981819:1 gene:Os04g0684900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CCR4-associated factor 1B, carbon cataboliterepressor 4-associated factor 1B, CCR4-associated factor 1-5 description:Component of the CCR4-NOTcomplex, Deadenylase, Deadenylation (poly(A) tail shortening), Development and stress response (Os04t0684900-01);Component of the CCR4-NOTcomplex, Deadenylase, Component of the plant P-body, Deadenylation (poly(A) tail shortening), Development and stress response (Os04t0684900-02)
Sequence	ATGCCGTCAGAGTTCGTCGCCGCCAGGAAGAAGCCGCCGCCGGAGTTGTTGTTCGCCGCC GGTCGGAAGAAGCAGCAGCCGCCGCCGCCTGGCATGGCGTTCGTGCCGTCGGAGTTCGCC GCCGCCGGCGTTGGCAGGAAGAGGCAGCCTGCGCCGCCGGTGGAGATACGCCGGGTGTGG GCGCACAACGTGGAGGAGGAATTCCGGATCATCCGCAACGCGATCGATCACTTCCCGTAC GTGTCCATGGACACGGAGTTTCCCGGCGTGATCCACCGCCCGACCAAGCACCCCGCCCTG CTCACCGCCGGCGACCGGTACGACCTCCTCCGCCGCAACGTGGACGCGCTCCACCTCATC CAGGTGGGCATCACCCTCGCCGCGTCCCCCACCGCGGCGCCCGCGCTCGCCTTCGAGATC AACCTCTCCGACTTCGACCAGCGCGTCCACCGCCACGCCGCCGAGTCCGTCCAGCTGCTG GCGGAGCACGGCGTGGACCTCGCCGCGCACCGCAGGCACGGCGTCAGGGCGAGCGCGCTG GCGCCGCTGCTCATGTCGTCGGGCCTCGTCTGCTCCCACGGCGCCGTCAAGTGGGTCACC TTCCACTCCGCCTACGACTTCGCCTACCTGGTCAAGCTCCTCATGGGGCGGAAGCTGCCG AGGTCCATGGCCGAGTTCCTGAACCTGGTGCGCGTCTTCTTCGGCGACGAGGTGTACGAC GTGAAGCACATGATGCGGCACTGCGGCGGCGAGCTGTACGGCGGGCTGGAGCGCGTGGCG GCGGCGCTGCAGGTGAAGCGCGCGGCGGGGCGGTGCCACCAGGCCGCCTCCGACAGCTTG CTCACCTGGGACGTCTTCCGGCGGATGCGGGAGCTCTACTTCCTCAAGCATGGCGTCGAG GCCTACCAAGGCGTGCTCTTCGGCCTGGAGCTCGACATGGACATGCCCAGCAACAAAACA CCCTCGCTGCCGCTGGTGGCAGCGAGATGA

Peptide Sequence

PEP ID	Os04t0684900-02
PEP Infomation	pep chromosome:IRGSP-1.0:4:34980601:34981819:1 gene:Os04g0684900 transcript:Os04t0684900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CCR4-associated factor 1B, carbon cataboliterepressor 4-associated factor 1B, CCR4-associated factor 1-5 description:Component of the CCR4-NOTcomplex, Deadenylase, Deadenylation (poly(A) tail shortening), Development and stress response (Os04t0684900-01);Component of the CCR4-NOTcomplex, Deadenylase, Component of the plant P-body, Deadenylation (poly(A) tail shortening), Development and stress response (Os04t0684900-02)
Sequence	MPSEFVAARKKPPPELLFAAGRKKQQPPPPGMAFVPSEFAAAGVGRKRQPAPPVEIRRVW AHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRNVDALHLI QVGITLAASPTAAPALAFEINLSDFDQRVHRHAAESVQLLAEHGVDLAAHRRHGVRASAL APLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLPRSMAEFLNLVRVFFGDEVYD VKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSLLTWDVFRRMRELYFLKHGVE AYQGVLFGLELDMDMPSNKTPSLPLVAAR

Transcript Sequence

Transcript ID	Os04t0684900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:34980601:34981819:1 gene:Os04g0684900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CCR4-associated factor 1B, carbon cataboliterepressor 4-associated factor 1B, CCR4-associated factor 1-5 description:Component of the CCR4-NOTcomplex, Deadenylase, Deadenylation (poly(A) tail shortening), Development and stress response (Os04t0684900-01);Component of the CCR4-NOTcomplex, Deadenylase, Component of the plant P-body, Deadenylation (poly(A) tail shortening), Development and stress response (Os04t0684900-02)
Sequence	AAACAGGCAAACGCACTCGCATCTCCAATTCGGTCCGAATTTTTCCAAATTCCAATTGCT CATCGCGCTTCGAATTCGTTGCCGAGATCCATCCAATCTTTGAGTTAAGACATGCCGTCA GAGTTCGTCGCCGCCAGGAAGAAGCCGCCGCCGGAGTTGTTGTTCGCCGCCGGTCGGAAG AAGCAGCAGCCGCCGCCGCCTGGCATGGCGTTCGTGCCGTCGGAGTTCGCCGCCGCCGGC GTTGGCAGGAAGAGGCAGCCTGCGCCGCCGGTGGAGATACGCCGGGTGTGGGCGCACAAC GTGGAGGAGGAATTCCGGATCATCCGCAACGCGATCGATCACTTCCCGTACGTGTCCATG GACACGGAGTTTCCCGGCGTGATCCACCGCCCGACCAAGCACCCCGCCCTGCTCACCGCC GGCGACCGGTACGACCTCCTCCGCCGCAACGTGGACGCGCTCCACCTCATCCAGGTGGGC ATCACCCTCGCCGCGTCCCCCACCGCGGCGCCCGCGCTCGCCTTCGAGATCAACCTCTCC GACTTCGACCAGCGCGTCCACCGCCACGCCGCCGAGTCCGTCCAGCTGCTGGCGGAGCAC GGCGTGGACCTCGCCGCGCACCGCAGGCACGGCGTCAGGGCGAGCGCGCTGGCGCCGCTG CTCATGTCGTCGGGCCTCGTCTGCTCCCACGGCGCCGTCAAGTGGGTCACCTTCCACTCC GCCTACGACTTCGCCTACCTGGTCAAGCTCCTCATGGGGCGGAAGCTGCCGAGGTCCATG GCCGAGTTCCTGAACCTGGTGCGCGTCTTCTTCGGCGACGAGGTGTACGACGTGAAGCAC ATGATGCGGCACTGCGGCGGCGAGCTGTACGGCGGGCTGGAGCGCGTGGCGGCGGCGCTG CAGGTGAAGCGCGCGGCGGGGCGGTGCCACCAGGCCGCCTCCGACAGCTTGCTCACCTGG GACGTCTTCCGGCGGATGCGGGAGCTCTACTTCCTCAAGCATGGCGTCGAGGCCTACCAA GGCGTGCTCTTCGGCCTGGAGCTCGACATGGACATGCCCAGCAACAAAACACCCTCGCTG CCGCTGGTGGCAGCGAGATGATACGATCTCCTCTCCTCCGCTGTAAAATTTGTTGATTCG TCGTCTGCAAGAAAGGATTTCTTTCGGCAGATGTACAGTAATAATAAGAGGGAAAAAAAG ATGGTTTAATTGATTGGTT