Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0684500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:34958612:34970010:1 gene:Os04g0684500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0684500-01);Hypothetical conserved gene. (Os04t0684500-02)
Sequence

ATGCAGTTCCTCTCGCTCTCCGCCGCCGCCGCCTCCTCGCCGGCGGCCGCCGTCCTCCCA
CCGAAGCCATTCAAACCCCTCTCCTCCGCGGCCCCCTTCCGTCGCCCCTCCCCGCCTCCG
CCGCCTCCGTCCCCGGTGCCCTCACCCGCGCCACCGCCACCGCCGCATCGCCCTTCTCCT
TCTCCTCCCCCGAACCCCCTCTCCTCCAAGCTATGGCTGTCCAGCAAGCTCTCCCCGCCG
CCCCCCGAGACACTAGAGCAGCCAGAGCCTTCTACTACTACTACTACTACTACCCCGCCG
CCGCCGGAACCGGAGGCGGAGGCGGAGGCGCGGCGGCAGGAGGAATTCCGGCACAAGGGG
AAGGTCTTCGTCGGGAACCTTCCACTGTGGGCCAGGAAGGCGGAGATCGCCGAGTTCTTC
CGCCAGTTTGGGCCCCTGGAGAAGGTCGAGCTCGTGCGCGGCCACGACGATCCCGAGCGC
AACGTGGGCTTCTGCTTCCTATACTACGGAGGCGACGACGCGGACGCCGCGGCGGAGCGT
GCGGTGGAGGTTGACGGGGTTGACTTCCGTGGGAGGTCGCTCACCGTGAGGCTTGACGAC
GGCAGGAAAGGGAGGGCCAGGGCTGAGCAGCGGGCGCGCTGGGTGAACGACGGCCGGAGG
CGCGAGCCACGGTCGCCGTGGCACGAGGGCAGGGACGAGGCGTGCCGTGAGTTCCGCAGG
GTGGTGGAATCACGGCCCGACAACTGGCAGGCCGTCGTCTCTGCATTCGAGAGGATACCC
AAGCCATCAAGGAGAGAATTCGGTCTGATGATTGTTTATTATGCCAAGCGAGGTGATAAG
CATCATGCTCGTGCAACATTTGAGAACATGAGAGCAAGAGGAATAGAGCCCAATGCATTT
GTTTTTACAAGCCTTGTTCACGCTTATGCAGTTGCTAGAGATATGCGTGGAGCTCTGTCT
TGCGTTGAGGAAATGAAATCTGAGGGTCTTGAGCTGACAATTGTTACCTACAGTATCCTT
ATTTCAGGATTCGCCAAAATTAATGATTCCCAATCTGCAGATAACTTGTTCAAAGAGGCT
AAGACCAAGCTTAGCAGTCTCAATGGAATCATATATAGTAACATCATACATGCTCACTGT
CAATCTGGCAATATGGAACGGGCTGAAGAACTGGTGCGTGAAATGGAAGAGGATGGGATA
GATGCTCCTATAGATGTATATCACAGTATGATGCATGGATATACCATCATTCAGAACGAA
AATAAATGTCTAGTTGTCTTTGAACGGCTTAAGGAGTGTGGCTTTAAACCATCAATAATC
TCTTATGGGTGCCTTCTTAATTTGTATGTCAAGATAGGTAAGGTTGCCAAAGCATTATCT
ATTAGCAAAGAAATGGAGTCTTGTGGCATCAAACATAATAATAAAACATACTCTATGCTT
ATCAATGGATTTATCCATTTGCACGACTTTGCAAATGCTTTCGCCATATTTGAGGAAATG
CTAAGATCAGGTCTACAACCTGATCGTGCCATATACAATTTGCTTATAGAGGCATTTTGT
AAGATGGGAAACATGGATCGTGCTATTTGCATTTTGGAAAAAATGCAGAAGGAACGAATG
CAACCATCAAATAGAGCATTCAGGCCTATCATAGAGGGATATGCAGTTGCTGGTGATATG
AAAAGTGCTTTGGATACTCTTGATCTGATGCGGCGAAGTGGTTGTGTTCCCACTGTAATG
ACTTACAATGCTCTCATTCACGGGCTAGTTAGAAAGCACAAGGTTCAAAGAGCTGTCTCT
GTGCTTGATAAGATGTCCATCGCTGGCATTACACCAAATGAGCATACATACACAATCATT
ATGAGAGGTTATGCTGCCAGTGGAGATATTGGGAAGGCTTTTGAATACTTCACCAAAATA
AAAGAGAGTGGTCTAAAACTCGATGTGTACATTTATGAAACATTGCTCAGAGCCTGTTGC
AAATCAGGGAGGATGCAGAGTGCCTTAGCAGTCACTCGTGAGATGAGCTTCCAAAAGATA
CCAAGGAATACATTTATATATAATATTTTGATTGATGGATGGGCTCGGAGAGGTGATGTT
TGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGTGTCCCTCCTAACATCCAT
ACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGCAGAGAGCAGAAAAG
GTGATTGAAGAAATGGTAGATGTTGGACTAAAACCTAATGTCAAGACATATACTACCTTG
ATTAAAGGTTGGGCAAGAGTGTCACTTCCAGACAGGGCATTGAAATGCTTTGAGGAGATG
AAACTTGCTGGGTTGAAACCTGATGAGGCTTCTTATCATTGCTTGGTGACTTCACTTCTG
TCAAGGGCAACTGTAATGGAGGGAAGTACCTACACAGGAATCATTAGTGTCTGTAGAGAA
ATGTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTGTTCACTGGTCTAGATGGCTT
CACAAGATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCAGAGAATATTTCCTCCT
GATTGGAATTCATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGCATGGGGGAGTCT
GATGATTACAGTGATTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATATTGATGAT
AGCTGA

Peptide Sequence

PEP ID

Os04t0684500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:34958612:34970010:1 gene:Os04g0684500 transcript:Os04t0684500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0684500-01);Hypothetical conserved gene. (Os04t0684500-02)
Sequence

MQFLSLSAAAASSPAAAVLPPKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSP
SPPPNPLSSKLWLSSKLSPPPPETLEQPEPSTTTTTTTPPPPEPEAEAEARRQEEFRHKG
KVFVGNLPLWARKAEIAEFFRQFGPLEKVELVRGHDDPERNVGFCFLYYGGDDADAAAER
AVEVDGVDFRGRSLTVRLDDGRKGRARAEQRARWVNDGRRREPRSPWHEGRDEACREFRR
VVESRPDNWQAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAF
VFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEA
KTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNE
NKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSML
INGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERM
QPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS
VLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACC
KSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIH
TYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM
KLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSRWL
HKIERTGGALTEALQRIFPPDWNSLEFLGEPSSSISMGESDDYSDSDFSGDEDEDHNIDD
S

Transcript Sequence

Transcript ID

Os04t0684500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:34958612:34970010:1 gene:Os04g0684500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0684500-01);Hypothetical conserved gene. (Os04t0684500-02)
Sequence

GTCCGCATCCAATTCCCGGGCCATTCGAAATCCCCAACACCAGTAGCCGGCCGCGGCATG
CAGTTCCTCTCGCTCTCCGCCGCCGCCGCCTCCTCGCCGGCGGCCGCCGTCCTCCCACCG
AAGCCATTCAAACCCCTCTCCTCCGCGGCCCCCTTCCGTCGCCCCTCCCCGCCTCCGCCG
CCTCCGTCCCCGGTGCCCTCACCCGCGCCACCGCCACCGCCGCATCGCCCTTCTCCTTCT
CCTCCCCCGAACCCCCTCTCCTCCAAGCTATGGCTGTCCAGCAAGCTCTCCCCGCCGCCC
CCCGAGACACTAGAGCAGCCAGAGCCTTCTACTACTACTACTACTACTACCCCGCCGCCG
CCGGAACCGGAGGCGGAGGCGGAGGCGCGGCGGCAGGAGGAATTCCGGCACAAGGGGAAG
GTCTTCGTCGGGAACCTTCCACTGTGGGCCAGGAAGGCGGAGATCGCCGAGTTCTTCCGC
CAGTTTGGGCCCCTGGAGAAGGTCGAGCTCGTGCGCGGCCACGACGATCCCGAGCGCAAC
GTGGGCTTCTGCTTCCTATACTACGGAGGCGACGACGCGGACGCCGCGGCGGAGCGTGCG
GTGGAGGTTGACGGGGTTGACTTCCGTGGGAGGTCGCTCACCGTGAGGCTTGACGACGGC
AGGAAAGGGAGGGCCAGGGCTGAGCAGCGGGCGCGCTGGGTGAACGACGGCCGGAGGCGC
GAGCCACGGTCGCCGTGGCACGAGGGCAGGGACGAGGCGTGCCGTGAGTTCCGCAGGGTG
GTGGAATCACGGCCCGACAACTGGCAGGCCGTCGTCTCTGCATTCGAGAGGATACCCAAG
CCATCAAGGAGAGAATTCGGTCTGATGATTGTTTATTATGCCAAGCGAGGTGATAAGCAT
CATGCTCGTGCAACATTTGAGAACATGAGAGCAAGAGGAATAGAGCCCAATGCATTTGTT
TTTACAAGCCTTGTTCACGCTTATGCAGTTGCTAGAGATATGCGTGGAGCTCTGTCTTGC
GTTGAGGAAATGAAATCTGAGGGTCTTGAGCTGACAATTGTTACCTACAGTATCCTTATT
TCAGGATTCGCCAAAATTAATGATTCCCAATCTGCAGATAACTTGTTCAAAGAGGCTAAG
ACCAAGCTTAGCAGTCTCAATGGAATCATATATAGTAACATCATACATGCTCACTGTCAA
TCTGGCAATATGGAACGGGCTGAAGAACTGGTGCGTGAAATGGAAGAGGATGGGATAGAT
GCTCCTATAGATGTATATCACAGTATGATGCATGGATATACCATCATTCAGAACGAAAAT
AAATGTCTAGTTGTCTTTGAACGGCTTAAGGAGTGTGGCTTTAAACCATCAATAATCTCT
TATGGGTGCCTTCTTAATTTGTATGTCAAGATAGGTAAGGTTGCCAAAGCATTATCTATT
AGCAAAGAAATGGAGTCTTGTGGCATCAAACATAATAATAAAACATACTCTATGCTTATC
AATGGATTTATCCATTTGCACGACTTTGCAAATGCTTTCGCCATATTTGAGGAAATGCTA
AGATCAGGTCTACAACCTGATCGTGCCATATACAATTTGCTTATAGAGGCATTTTGTAAG
ATGGGAAACATGGATCGTGCTATTTGCATTTTGGAAAAAATGCAGAAGGAACGAATGCAA
CCATCAAATAGAGCATTCAGGCCTATCATAGAGGGATATGCAGTTGCTGGTGATATGAAA
AGTGCTTTGGATACTCTTGATCTGATGCGGCGAAGTGGTTGTGTTCCCACTGTAATGACT
TACAATGCTCTCATTCACGGGCTAGTTAGAAAGCACAAGGTTCAAAGAGCTGTCTCTGTG
CTTGATAAGATGTCCATCGCTGGCATTACACCAAATGAGCATACATACACAATCATTATG
AGAGGTTATGCTGCCAGTGGAGATATTGGGAAGGCTTTTGAATACTTCACCAAAATAAAA
GAGAGTGGTCTAAAACTCGATGTGTACATTTATGAAACATTGCTCAGAGCCTGTTGCAAA
TCAGGGAGGATGCAGAGTGCCTTAGCAGTCACTCGTGAGATGAGCTTCCAAAAGATACCA
AGGAATACATTTATATATAATATTTTGATTGATGGATGGGCTCGGAGAGGTGATGTTTGG
GAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGTGTCCCTCCTAACATCCATACT
TATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGCAGAGAGCAGAAAAGGTG
ATTGAAGAAATGGTAGATGTTGGACTAAAACCTAATGTCAAGACATATACTACCTTGATT
AAAGGTTGGGCAAGAGTGTCACTTCCAGACAGGGCATTGAAATGCTTTGAGGAGATGAAA
CTTGCTGGGTTGAAACCTGATGAGGCTTCTTATCATTGCTTGGTGACTTCACTTCTGTCA
AGGGCAACTGTAATGGAGGGAAGTACCTACACAGGAATCATTAGTGTCTGTAGAGAAATG
TCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTGTTCACTGGTCTAGATGGCTTCAC
AAGATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCAGAGAATATTTCCTCCTGAT
TGGAATTCATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGCATGGGGGAGTCTGAT
GATTACAGTGATTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATATTGATGATAGC
TGAAAAACTCTAGATTCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTTTGTCCTT
TGGTTCTGCCAGAGTGGATGACCGAACAAGCAATGTCTTTGATCAAACTGTGCCCTCACA
TTCAGACACCAGTGGCTTGTGGACTATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAG
CGTGAGCTGGCTGGCCTCTGCTGCGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACT
GGGACTGAAGACACAGGCTGTCAATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGC
TGTACATATCAATGGCTGGCACAGAGAGGCCAACAGGAGCTATAAAATGATGTTCCGATT
GCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCG
CCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGGTGTAATTTCCTCTCTAGTCTCTAGA
ATTACAAGGCAAGGTATATATTTTTAACGTTTTTGTTTATGAATAGAAGATGAGCTATGC
TTAGATTATGGATTGTATAGTACCCGCCCATTGAGGCTGGGCTGGGTCCTCCAGAATATA
TACCCCTGCATGTGTCACTGACATCATTTGGTCGACATGATAGAAATATTTGGGAGC