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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0682100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:34824492:34826306:1 gene:Os04g0682100 gene_biotype:protein_coding transcript_biotype:protein_coding description:C2 calcium/lipid-binding region, CaLB domain containing protein. (Os04t0682100-01)
Sequence

ATGGTGCACGGGAAGCTGGAGGTCCTCCTCGTCTGCGCCAAGGGCCTCGAGGACACTGAC
TTCTTGAACGACATGGACCCCTACGTGATCCTCACCTGCCGCACTCAGGAGCAGAAAAGC
AGCGTTGCAAAAGGAGCAGGAAGCGAGCCTGAATGGAACGAGACCTTCGTCTTCACCGTC
TCCGACGATGTTCCACAGCTCAATGTCAAGATCATGGACAGTGATGCCTTCTCAGCTGAC
GATTTCGTCGGTGAAGCAAACATTCCTCTGGAGCCTGTGTTCCTGGAAGGCAGCCTTCCT
CCAGCCGTCCACCGTGTCGTCAAGGAGGAGAAGTACTGTGGAGAGATCAAGGTTGCTCTC
ACCTTCACTCCAGCAGCGGAAACTCGCCATCATCACAACCACGAGAACGAGGGGGAGGGT
TACAGCAGCTGGAACTGA

Peptide Sequence

PEP ID

Os04t0682100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:34824492:34826306:1 gene:Os04g0682100 transcript:Os04t0682100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:C2 calcium/lipid-binding region, CaLB domain containing protein. (Os04t0682100-01)
Sequence

MVHGKLEVLLVCAKGLEDTDFLNDMDPYVILTCRTQEQKSSVAKGAGSEPEWNETFVFTV
SDDVPQLNVKIMDSDAFSADDFVGEANIPLEPVFLEGSLPPAVHRVVKEEKYCGEIKVAL
TFTPAAETRHHHNHENEGEGYSSWN

Transcript Sequence

Transcript ID

Os04t0682100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:34824492:34826306:1 gene:Os04g0682100 gene_biotype:protein_coding transcript_biotype:protein_coding description:C2 calcium/lipid-binding region, CaLB domain containing protein. (Os04t0682100-01)
Sequence

AGCGACTAGCGAGAGATCGATCGAAGAGAAGAGGAGAGATGGTGCACGGGAAGCTGGAGG
TCCTCCTCGTCTGCGCCAAGGGCCTCGAGGACACTGACTTCTTGAACGACATGGACCCCT
ACGTGATCCTCACCTGCCGCACTCAGGAGCAGAAAAGCAGCGTTGCAAAAGGAGCAGGAA
GCGAGCCTGAATGGAACGAGACCTTCGTCTTCACCGTCTCCGACGATGTTCCACAGCTCA
ATGTCAAGATCATGGACAGTGATGCCTTCTCAGCTGACGATTTCGTCGGTGAAGCAAACA
TTCCTCTGGAGCCTGTGTTCCTGGAAGGCAGCCTTCCTCCAGCCGTCCACCGTGTCGTCA
AGGAGGAGAAGTACTGTGGAGAGATCAAGGTTGCTCTCACCTTCACTCCAGCAGCGGAAA
CTCGCCATCATCACAACCACGAGAACGAGGGGGAGGGTTACAGCAGCTGGAACTGATTGC
CTGCTACTAATGAGCATCAACGAGAGGAGATCTTGTCTCAAGAATTAATGTGCTTGTCAA
CAATACTCCGTGCTATGATGTCCTAAGAACTGAAACATCCATTTATATGTATATCCCAGA
CCATTGACTTGCTCTGCCTAAATTTTGTATATTTTTTACTACAAAGATGTGATGGTGTGA
AATCCAGAATATTTTTATCGAATCATGCACTTTCTTTC