Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0679100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:34677521:34681308:1 gene:Os04g0679100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clathrin light chain family protein. (Os04t0679100-01)
Sequence

ATGGCCTCCTTCTTCGCCGACGACGGCGCCGACGAGCTCCCCCGCACCGCCTCCCACCCC
TTCGACGCCGACGACGACGCCGCGCCCGATGCATCAGGAGGCGCCGCCGCCGACGACACC
GGATACGGCGGCTACGCCTCCTTCGTCGACGGCGGCGTAGAGGATGTGGAGGAGGAGGAG
GAGGAGATCGCCGTGGAGTCCGAGGGGGTCCCGATCGGCCACGTCTCCGGAGGGTTCTCG
CCCTCGCCCTTCTCCCCCGACCCGGAGCTGGACGGCGGCGACGGCCCTATCCTCCCGCCG
CCGGCCCAGATGGGGGCGGAGGAGGGGATCCTCCTCCGCGAGTGGCGCAGGCAAAATGCT
ATAGTTCTTGAGGAAAAAGAGCGGAAGGAGAAGGAGCTACGGGCCCAGATACTTGCTGAA
GCCGAAGAGTTTAAGAAGGCTTTCTATGAGAAGAGGATACAGAACTGTGAGACAAACAAG
GTCCATAACAGAGAAAGAGAGAAGATTTTCGTAGCTGGCCAGGAGAAATTCCATGCCGAA
GCAGACAAGCAGTACTGGAAGTCGATATCGGAGCTCATCCCACATGAAATAGCTACCATT
GAGAAGCGGGGAAAGAAGGACAAGGACAAGAAGCCATCCATCACAGTCATTCAGGGCCCT
AAGCCTGGCAAGCCGACAGACCTCTCACGAATGCGCCAGATCTTAGTGAAGCTGAAGCAC
GCTCCTCCACCGCACATGATGCAACCTCCACCAGCGTCTGCTGCTAAAGACGGCGCAAAG
GATGGTGCTAAAGACGGCACACCAGCCCCAGCAAATGGAACCAAGAAGCCTGCAGAGAGC
AAAGAGAAACCTGCCAACGGATCGCCTGCGGAAGCAGAGAAGGAGCAGCCTGCAGCATCG
GAGTAA

Peptide Sequence

PEP ID

Os04t0679100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:34677521:34681308:1 gene:Os04g0679100 transcript:Os04t0679100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clathrin light chain family protein. (Os04t0679100-01)
Sequence

MASFFADDGADELPRTASHPFDADDDAAPDASGGAAADDTGYGGYASFVDGGVEDVEEEE
EEIAVESEGVPIGHVSGGFSPSPFSPDPELDGGDGPILPPPAQMGAEEGILLREWRRQNA
IVLEEKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKFHAE
ADKQYWKSISELIPHEIATIEKRGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILVKLKH
APPPHMMQPPPASAAKDGAKDGAKDGTPAPANGTKKPAESKEKPANGSPAEAEKEQPAAS
E

Transcript Sequence

Transcript ID

Os04t0679100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:34677521:34681308:1 gene:Os04g0679100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clathrin light chain family protein. (Os04t0679100-01)
Sequence

CACGCGCGTCACGGACACCACCCAGTCCCCTCCCCACACCACGCGCCGCCCAAAACCTCC
GCCGCGTTTCGCACCACCACCACCGCCGCCGACCATGGCCTCCTTCTTCGCCGACGACGG
CGCCGACGAGCTCCCCCGCACCGCCTCCCACCCCTTCGACGCCGACGACGACGCCGCGCC
CGATGCATCAGGAGGCGCCGCCGCCGACGACACCGGATACGGCGGCTACGCCTCCTTCGT
CGACGGCGGCGTAGAGGATGTGGAGGAGGAGGAGGAGGAGATCGCCGTGGAGTCCGAGGG
GGTCCCGATCGGCCACGTCTCCGGAGGGTTCTCGCCCTCGCCCTTCTCCCCCGACCCGGA
GCTGGACGGCGGCGACGGCCCTATCCTCCCGCCGCCGGCCCAGATGGGGGCGGAGGAGGG
GATCCTCCTCCGCGAGTGGCGCAGGCAAAATGCTATAGTTCTTGAGGAAAAAGAGCGGAA
GGAGAAGGAGCTACGGGCCCAGATACTTGCTGAAGCCGAAGAGTTTAAGAAGGCTTTCTA
TGAGAAGAGGATACAGAACTGTGAGACAAACAAGGTCCATAACAGAGAAAGAGAGAAGAT
TTTCGTAGCTGGCCAGGAGAAATTCCATGCCGAAGCAGACAAGCAGTACTGGAAGTCGAT
ATCGGAGCTCATCCCACATGAAATAGCTACCATTGAGAAGCGGGGAAAGAAGGACAAGGA
CAAGAAGCCATCCATCACAGTCATTCAGGGCCCTAAGCCTGGCAAGCCGACAGACCTCTC
ACGAATGCGCCAGATCTTAGTGAAGCTGAAGCACGCTCCTCCACCGCACATGATGCAACC
TCCACCAGCGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGC
CCCAGCAAATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCC
TGCGGAAGCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGA
ACGCCCGAACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTC
TATCCTGTATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAG
AACATTCAGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTACAAGTA
GCTTCAGTGGATACTTTGTGATCATAAGTTCAGAACTGAAAGCGTAACTGAATGATGGAT
ATCAGACACGATTTCTTCCCTGTGGATACTCTGTGATCATAAGTTCAGAACTGAAAGCGC
AACTGAGTGATGGATTAT