Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0675500-03
CDS Infomation	cds chromosome:IRGSP-1.0:4:34492095:34496450:-1 gene:Os04g0675500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:oligosaccharyltransferase subunit Stt3a description:Similar to Itm1 protein. (Os04t0675500-01);Non-protein coding transcript. (Os04t0675500-02);Similar to Itm1 protein. (Os04t0675500-03)
Sequence	ATGGCCGCCGCCACCGCGCTGGACTCGCTGCCGGCGCCGCTCCGGTCGCTGCGGCTGAAG ACGAAGCAGCAGGAGCTCCTGCTCCGGGTCTCGGCGCTGGCGCTCATCTACGTGCTCGCG TTCGTCGTCCGCCTCTTCTCCGTGCTCCGCTACGAGTCCATGATCCACGAGTTCGATCCC TACTTCAACTACCGCACCACGCTCTTCCTCTCCGACCATGGATTCAGCGAGTTCTGGAAC TGGTTCGATTTCGAGAGCTGGTACCCGCTCGGCCGCGTCGTCGGCGGCACCCTCTTCCCG GGCCTCATGGTCACCGCCGCGCTGCTCCACCGCCTCCTCCGCGCGCTCTCCCTCGCCGTC CACATCCGCGAGGTCTGCGTCCTCACCGCCCCCTTCTTCGCCGCCAACACCACGCTCGTC GCCTACGCCTTCGGCCGCGAGATCTGGGACTCCGGCGCGGGCCTCGTCGCCGCCGCGCTC ATCGCCGTCTGCCCCGGCTACATCTCCCGCTCCGTCGCGGGCTCCTACGACAACGAGGGC GTCGCCATCTTCGCGCTGCTGCTCACCTTCTACCTCTTCGTGCGCGCCGTCAACACGGGA TCTCTCGCATGGTCGCTCGCCTCGGCGTTCGGCTACTTCTACATGGTCTCCGCGTGGGGA GGCTATGTCTTCATCATCAATCTGTTGCCGCTGTACGTGCTCGTGCTGCTCGTCACGGGG AGGTACTCGCAGAGGCTCTACGTGGCCTACAATTCCACGTATGTGCTTGGAATGCTACTT GCGATGCAGATCCGGTTCGTTGGGTTCCAACACGTCCAGTCTGGGGAGCACATGGCCGCT ATGGGAGTATTCTTCCTTTTGCAGGTTTTCTTTTTCTTGGACTGGGTGAAGTACCTGCTG AATGATGCCAAACTATTCAAGTCATTCCTGAGAATCACCCTGACATGTGTGATAACTGTT GGCACCCTAGCTCTTGGAATTGGTACCGCGTCAGGTTACATCTCCCCTTGGACAGGGCGG TTTTACTCCCTGCTTGATCCAACCTATGCAAAGGACCATATACCAATCATTGCATCAGTA TCTGAGCATCAACCAACAGCGTGGTCTTCGTTCATGTTTGATTTCCACATCCTTCTTTTC CTGTTCCCAGCAGGCCTCTACTTCTGTTTCAAGCGCTTGTCAGATGCCACAATATTTATA GTTATGTATGGCCTCACGAGTATGTACTTTGCTGGTGTGATGGTTCGGTTAATTCTTGTT GCAGCGCCAGCTGTTTGCCTTATTAGTGCCATTGCAGCATCAGCTACAATAAAAAATCTG ACTACCTTGATTCGGACAAAAAGCAAAAGTCCACAAACTGTCTCTGGAAAATCATCTGGC TCAAAGGCAGCTGCAAAGGGTGCAGTTGATCAATCCTTGCCTTTCCAGCAGAATGTGGCC ATTGCTTTACTTCTGGGTGCTTTCTACTTGCTTAGTAGATATGCTGTACACTGCACTTGG GTGACATCTGAAGCTTACTCTTCTCCTTCCATTGTTCTGGCCGCAAGGGGTCATAATGGA GGCAGGGTCATATTTGATGATTATCGTGAAGCGTATTATTGGCTTCGTCAGAACACTCCT TCTGATGCAAAGATTATGTCATGGTGGGATTATGGATACCAAATCACAGCTATGGGGAAC AGAACTGTTATTGTTGATAACAACACATGGAATAATACACATATAGCTACAGTTGGGCGT GCAATGTCATCCTATGAAGATGAAGCGTATGAGATAATGCAGTCACTGGATGTGAATTAT GTGCTTGTCGTATTTGGTGGTGTTACTGGTTATTCTTCAGATGACATTAACAAGTTCTTA TGGATGGTGCGCATTGGTGGTGGAGTTTTTCCTGTAATCAAAGAGCCTGATTACCTTGTT AATGGGGAGTATCGTGTCGACAAGGGGGCAGCACCAAAAATGTTGAATTGCTTAATGTAC AAGCTTTGTTATTACCGTTTTGGAGAACTGACCACAGAATATGGAAAACCTCCAGGATAC GATCGAGTACGAGGAGTGGAGATTGGCAACAAAGACATTAAGCTTGAGTACTTGGAGGAG GCATTCACAACTTCGAACTGGATAGTGCGCATATACAAGGTCAAACCCCCGAAGAATAGG TCTTGA

Peptide Sequence

PEP ID	Os04t0675500-03
PEP Infomation	pep chromosome:IRGSP-1.0:4:34492095:34496450:-1 gene:Os04g0675500 transcript:Os04t0675500-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:oligosaccharyltransferase subunit Stt3a description:Similar to Itm1 protein. (Os04t0675500-01);Non-protein coding transcript. (Os04t0675500-02);Similar to Itm1 protein. (Os04t0675500-03)
Sequence	MAAATALDSLPAPLRSLRLKTKQQELLLRVSALALIYVLAFVVRLFSVLRYESMIHEFDP YFNYRTTLFLSDHGFSEFWNWFDFESWYPLGRVVGGTLFPGLMVTAALLHRLLRALSLAV HIREVCVLTAPFFAANTTLVAYAFGREIWDSGAGLVAAALIAVCPGYISRSVAGSYDNEG VAIFALLLTFYLFVRAVNTGSLAWSLASAFGYFYMVSAWGGYVFIINLLPLYVLVLLVTG RYSQRLYVAYNSTYVLGMLLAMQIRFVGFQHVQSGEHMAAMGVFFLLQVFFFLDWVKYLL NDAKLFKSFLRITLTCVITVGTLALGIGTASGYISPWTGRFYSLLDPTYAKDHIPIIASV SEHQPTAWSSFMFDFHILLFLFPAGLYFCFKRLSDATIFIVMYGLTSMYFAGVMVRLILV AAPAVCLISAIAASATIKNLTTLIRTKSKSPQTVSGKSSGSKAAAKGAVDQSLPFQQNVA IALLLGAFYLLSRYAVHCTWVTSEAYSSPSIVLAARGHNGGRVIFDDYREAYYWLRQNTP SDAKIMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGRAMSSYEDEAYEIMQSLDVNY VLVVFGGVTGYSSDDINKFLWMVRIGGGVFPVIKEPDYLVNGEYRVDKGAAPKMLNCLMY KLCYYRFGELTTEYGKPPGYDRVRGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKPPKNR S

Transcript Sequence

Transcript ID	Os04t0675500-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:34492095:34496450:-1 gene:Os04g0675500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:oligosaccharyltransferase subunit Stt3a description:Similar to Itm1 protein. (Os04t0675500-01);Non-protein coding transcript. (Os04t0675500-02);Similar to Itm1 protein. (Os04t0675500-03)
Sequence	GCTCTAAAACCTCTCCCGCTCCACGCGCGGGGCGCATGAAACCCTAGCGAGAGGCGCCAG ATCTCCCGCATCCGGATCGCCGCCATGGCCGCCGCCACCGCGCTGGACTCGCTGCCGGCG CCGCTCCGGTCGCTGCGGCTGAAGACGAAGCAGCAGGAGCTCCTGCTCCGGGTCTCGGCG CTGGCGCTCATCTACGTGCTCGCGTTCGTCGTCCGCCTCTTCTCCGTGCTCCGCTACGAG TCCATGATCCACGAGTTCGATCCCTACTTCAACTACCGCACCACGCTCTTCCTCTCCGAC CATGGATTCAGCGAGTTCTGGAACTGGTTCGATTTCGAGAGCTGGTACCCGCTCGGCCGC GTCGTCGGCGGCACCCTCTTCCCGGGCCTCATGGTCACCGCCGCGCTGCTCCACCGCCTC CTCCGCGCGCTCTCCCTCGCCGTCCACATCCGCGAGGTCTGCGTCCTCACCGCCCCCTTC TTCGCCGCCAACACCACGCTCGTCGCCTACGCCTTCGGCCGCGAGATCTGGGACTCCGGC GCGGGCCTCGTCGCCGCCGCGCTCATCGCCGTCTGCCCCGGCTACATCTCCCGCTCCGTC GCGGGCTCCTACGACAACGAGGGCGTCGCCATCTTCGCGCTGCTGCTCACCTTCTACCTC TTCGTGCGCGCCGTCAACACGGGATCTCTCGCATGGTCGCTCGCCTCGGCGTTCGGCTAC TTCTACATGGTCTCCGCGTGGGGAGGCTATGTCTTCATCATCAATCTGTTGCCGCTGTAC GTGCTCGTGCTGCTCGTCACGGGGAGGTACTCGCAGAGGCTCTACGTGGCCTACAATTCC ACGTATGTGCTTGGAATGCTACTTGCGATGCAGATCCGGTTCGTTGGGTTCCAACACGTC CAGTCTGGGGAGCACATGGCCGCTATGGGAGTATTCTTCCTTTTGCAGGTTTTCTTTTTC TTGGACTGGGTGAAGTACCTGCTGAATGATGCCAAACTATTCAAGTCATTCCTGAGAATC ACCCTGACATGTGTGATAACTGTTGGCACCCTAGCTCTTGGAATTGGTACCGCGTCAGGT TACATCTCCCCTTGGACAGGGCGGTTTTACTCCCTGCTTGATCCAACCTATGCAAAGGAC CATATACCAATCATTGCATCAGTATCTGAGCATCAACCAACAGCGTGGTCTTCGTTCATG TTTGATTTCCACATCCTTCTTTTCCTGTTCCCAGCAGGCCTCTACTTCTGTTTCAAGCGC TTGTCAGATGCCACAATATTTATAGTTATGTATGGCCTCACGAGTATGTACTTTGCTGGT GTGATGGTTCGGTTAATTCTTGTTGCAGCGCCAGCTGTTTGCCTTATTAGTGCCATTGCA GCATCAGCTACAATAAAAAATCTGACTACCTTGATTCGGACAAAAAGCAAAAGTCCACAA ACTGTCTCTGGAAAATCATCTGGCTCAAAGGCAGCTGCAAAGGGTGCAGTTGATCAATCC TTGCCTTTCCAGCAGAATGTGGCCATTGCTTTACTTCTGGGTGCTTTCTACTTGCTTAGT AGATATGCTGTACACTGCACTTGGGTGACATCTGAAGCTTACTCTTCTCCTTCCATTGTT CTGGCCGCAAGGGGTCATAATGGAGGCAGGGTCATATTTGATGATTATCGTGAAGCGTAT TATTGGCTTCGTCAGAACACTCCTTCTGATGCAAAGATTATGTCATGGTGGGATTATGGA TACCAAATCACAGCTATGGGGAACAGAACTGTTATTGTTGATAACAACACATGGAATAAT ACACATATAGCTACAGTTGGGCGTGCAATGTCATCCTATGAAGATGAAGCGTATGAGATA ATGCAGTCACTGGATGTGAATTATGTGCTTGTCGTATTTGGTGGTGTTACTGGTTATTCT TCAGATGACATTAACAAGTTCTTATGGATGGTGCGCATTGGTGGTGGAGTTTTTCCTGTA ATCAAAGAGCCTGATTACCTTGTTAATGGGGAGTATCGTGTCGACAAGGGGGCAGCACCA AAAATGTTGAATTGCTTAATGTACAAGCTTTGTTATTACCGTTTTGGAGAACTGACCACA GAATATGGAAAACCTCCAGGATACGATCGAGTACGAGGAGTGGAGATTGGCAACAAAGAC ATTAAGCTTGAGTACTTGGAGGAGGCATTCACAACTTCGAACTGGATAGTGCGCATATAC AAGGTCAAACCCCCGAAGAATAGGTCTTGAGGAGAGGAATCATCTCTTGGTTAGTATCTG GTGCTATTACCTTGAGGTACATTGTGTCAAGTCAAAACGTATTGGAGTTCCTACAGGAGA CGGGCAATTGATTTGAAAATCTGCATCAGCTGCCCCCAAGTGCGATCTTTTGTTTTGGTG AGACTGACGGAAGTAGACCATAGGTCAGTTTGAAGTAACGATCATCCGTCTTCCCCTATA TCATTTTGTTAGATGTAATCAGGTGCCATTCAGAACTAGCAATTGCGACGACCGAGTACT TTTTGATTGCTGAGCATGGTATGACAGTACTCCAGATGTTTTTGTAAGCACAACAGCTTA TTTGCGTAGTAACTTTAGATCGGGTTACACGGGACACTTGCAATTTTCTGGTGTTGAAGA CAACAATGAATAACTTAACTGTGGTTGCTCTGTTTTCCTCTGTGAGCTCTCATCATCTTG TGGCAATCGCAGTAGTCGTTTTTATGTTAATAAATGATGCCTATAAACTT