Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0674800-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:34450562:34454341:-1 gene:Os04g0674800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9C1 description:Similar to CEL1=CELLULASE 1 (Fragment). (Os04t0674800-01)
Sequence	ATGGCGGCGACGATGAACAAGACGCCGGCAACCACCTTCCTGCTGATACCGGCGGCGGCG TCGCTGGTTCTCCTCCTCGCGGCGGCCGCGTCGGTGGAGGCGTCGGCGTTCGACTACGCC GGCGCGTTCGACAAGTGCCTCCTGTTCTTCGAGGCGCAGCGCTCCGGCAAGCTCCCCGAC GACCGCCTCGTCCGGTGGCGCGGCGACTCCGCCCTCACCGACGGCTTCTCCCAGGGGGTG GATTTGGTGGGCGGGTACTACGACTCCGGCGACCACGTGAAGTTCGGGCTCCCGATGGCG TACGCGGTGACGATGCTGTCGTGGGGGGTGGTCGAGTTCGAGAAGGAGATGGTCGACGGC AACAAGCTCCACCGCGTCCTCGACGCCATCCGCTGGGGCACCAACTACTTCGTCAAGGCC CACACCCAGCACAACGCCCTCTGGGTCCAGGTGGGTGACGGCGACAGCGACCACCTGTGC TGGGAGCGCGCCGAGGACATGTCGACGCCGCGCACGGCGTTCAAGATCGACATCAACAAC CCCGGGTCGGAGGTCGCCGGCGAGACCGCCGCCGCTCTCGCCGCCGCCGCCAAGGCCTTC AAGCCCTACGACCGCATGTACTCCGACCTCCTCCTCCTCCACTCCAAGCAGCTGTTCACG TTCGCGGACACGTTCAGGGGCAAGTACGACGACTCGCTGCAGAGCGCCAAGAAGTTCTAC CCGTCGGCGTCCGGCTACCAGGACGAGCTGCTGTGGGCGGCGGCGTGGCTGTACGAGGCG ACCGGCGACGAGCAGTACCTCCGCTACGTGTCCCAGAACGCGGAGGCGTTCGGCGGCACC GGCTGGGCCGTCACCGAGTTCTCCTGGGACAACAAGTACGCCGGCCTCCAGGTCCTCCTC TCCAAGGTCCTCTTCGAGCAGGGCGGCAGCGCCGCCGGCTACGCCGACACGCTGAAGCAG TATCAGGCCAAGGCCGAGTTCTTCCTCTGCGCCTGCCTCCAGAAGAACAACGGCCACAAC GTCAAGATGACCCCTGGTGGTCTCATGTACGTGAGCGACTGGAGCAACATGCAGTACGTG AGCTCGTCGGCGTTCCTCCTCACCGTCTACGCCGACTACCTCGCCGAGTCGCGGGGAACG CTCAGGTGCCCGGACGGCGAGGTGAAGCCGGCGGAGATCCTCCGGTTCGCGAGGTCGCAG GTCGACTACGTCCTCGGCAAGAACCCCAAGGGGATGAGCTACATGGTCGGATACGGCAGC TACTACCCGACGCACGTCCACCACCGCGGCGCGTCCATCCCGTCCATCTACGCCATGAAC GCCACCGTCGGGTGCATGGAAAGCTTCGACAAGTACTACAACAGCAAGAACGCCGACCCC AACGTCCTCCACGGCGCCCTCGTCGGCGGCCCCGACGCCAACGACGCCTACGACGACGAC CGCTGCAACTACCAGCACGCCGAGCCCACCCTCGCCGGCAACGCCCCCATGTCCGGCGTC TTCGCCCGCCTCGCCGCCTCGCCCGCCGATAACACGCCGGAGTACACGCCGGCGCCAAAT GCCCCCTCGCCATCAAATGGTGGGTCGCCGTTGGAGTTCGTGCACACGGTGACGAACACG TGGAAGGCAAACGGCGTGGACTACTACCGGCACGTGGTGACGGCGAAGAACACGTGCGGC CACGCCATCACCTACCTGAAGCTGCAGATCAAGGAGCTCTCCGGGGAGATCTACGGCGTC TCCCGCACGAACGCCAAGGACATGTACGAGTTCCCGTCGTGGATGACACGGCTCGACGCC GGCGCGCAGCTCACCATCGTCTACATCCAGGGCGGCCCCGCCGCCAAGATCGCCGTCGTC GAGTACAAGACGGCCTGA

Peptide Sequence

PEP ID	Os04t0674800-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:34450562:34454341:-1 gene:Os04g0674800 transcript:Os04t0674800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9C1 description:Similar to CEL1=CELLULASE 1 (Fragment). (Os04t0674800-01)
Sequence	MAATMNKTPATTFLLIPAAASLVLLLAAAASVEASAFDYAGAFDKCLLFFEAQRSGKLPD DRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYAVTMLSWGVVEFEKEMVDG NKLHRVLDAIRWGTNYFVKAHTQHNALWVQVGDGDSDHLCWERAEDMSTPRTAFKIDINN PGSEVAGETAAALAAAAKAFKPYDRMYSDLLLLHSKQLFTFADTFRGKYDDSLQSAKKFY PSASGYQDELLWAAAWLYEATGDEQYLRYVSQNAEAFGGTGWAVTEFSWDNKYAGLQVLL SKVLFEQGGSAAGYADTLKQYQAKAEFFLCACLQKNNGHNVKMTPGGLMYVSDWSNMQYV SSSAFLLTVYADYLAESRGTLRCPDGEVKPAEILRFARSQVDYVLGKNPKGMSYMVGYGS YYPTHVHHRGASIPSIYAMNATVGCMESFDKYYNSKNADPNVLHGALVGGPDANDAYDDD RCNYQHAEPTLAGNAPMSGVFARLAASPADNTPEYTPAPNAPSPSNGGSPLEFVHTVTNT WKANGVDYYRHVVTAKNTCGHAITYLKLQIKELSGEIYGVSRTNAKDMYEFPSWMTRLDA GAQLTIVYIQGGPAAKIAVVEYKTA

Transcript Sequence

Transcript ID	Os04t0674800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:34450562:34454341:-1 gene:Os04g0674800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glycoside hydrolase OsGH9C1 description:Similar to CEL1=CELLULASE 1 (Fragment). (Os04t0674800-01)
Sequence	AATCCAGTATTCCACTACCGAGGTCGAGCAATGGCGGCGACGATGAACAAGACGCCGGCA ACCACCTTCCTGCTGATACCGGCGGCGGCGTCGCTGGTTCTCCTCCTCGCGGCGGCCGCG TCGGTGGAGGCGTCGGCGTTCGACTACGCCGGCGCGTTCGACAAGTGCCTCCTGTTCTTC GAGGCGCAGCGCTCCGGCAAGCTCCCCGACGACCGCCTCGTCCGGTGGCGCGGCGACTCC GCCCTCACCGACGGCTTCTCCCAGGGGGTGGATTTGGTGGGCGGGTACTACGACTCCGGC GACCACGTGAAGTTCGGGCTCCCGATGGCGTACGCGGTGACGATGCTGTCGTGGGGGGTG GTCGAGTTCGAGAAGGAGATGGTCGACGGCAACAAGCTCCACCGCGTCCTCGACGCCATC CGCTGGGGCACCAACTACTTCGTCAAGGCCCACACCCAGCACAACGCCCTCTGGGTCCAG GTGGGTGACGGCGACAGCGACCACCTGTGCTGGGAGCGCGCCGAGGACATGTCGACGCCG CGCACGGCGTTCAAGATCGACATCAACAACCCCGGGTCGGAGGTCGCCGGCGAGACCGCC GCCGCTCTCGCCGCCGCCGCCAAGGCCTTCAAGCCCTACGACCGCATGTACTCCGACCTC CTCCTCCTCCACTCCAAGCAGCTGTTCACGTTCGCGGACACGTTCAGGGGCAAGTACGAC GACTCGCTGCAGAGCGCCAAGAAGTTCTACCCGTCGGCGTCCGGCTACCAGGACGAGCTG CTGTGGGCGGCGGCGTGGCTGTACGAGGCGACCGGCGACGAGCAGTACCTCCGCTACGTG TCCCAGAACGCGGAGGCGTTCGGCGGCACCGGCTGGGCCGTCACCGAGTTCTCCTGGGAC AACAAGTACGCCGGCCTCCAGGTCCTCCTCTCCAAGGTCCTCTTCGAGCAGGGCGGCAGC GCCGCCGGCTACGCCGACACGCTGAAGCAGTATCAGGCCAAGGCCGAGTTCTTCCTCTGC GCCTGCCTCCAGAAGAACAACGGCCACAACGTCAAGATGACCCCTGGTGGTCTCATGTAC GTGAGCGACTGGAGCAACATGCAGTACGTGAGCTCGTCGGCGTTCCTCCTCACCGTCTAC GCCGACTACCTCGCCGAGTCGCGGGGAACGCTCAGGTGCCCGGACGGCGAGGTGAAGCCG GCGGAGATCCTCCGGTTCGCGAGGTCGCAGGTCGACTACGTCCTCGGCAAGAACCCCAAG GGGATGAGCTACATGGTCGGATACGGCAGCTACTACCCGACGCACGTCCACCACCGCGGC GCGTCCATCCCGTCCATCTACGCCATGAACGCCACCGTCGGGTGCATGGAAAGCTTCGAC AAGTACTACAACAGCAAGAACGCCGACCCCAACGTCCTCCACGGCGCCCTCGTCGGCGGC CCCGACGCCAACGACGCCTACGACGACGACCGCTGCAACTACCAGCACGCCGAGCCCACC CTCGCCGGCAACGCCCCCATGTCCGGCGTCTTCGCCCGCCTCGCCGCCTCGCCCGCCGAT AACACGCCGGAGTACACGCCGGCGCCAAATGCCCCCTCGCCATCAAATGGTGGGTCGCCG TTGGAGTTCGTGCACACGGTGACGAACACGTGGAAGGCAAACGGCGTGGACTACTACCGG CACGTGGTGACGGCGAAGAACACGTGCGGCCACGCCATCACCTACCTGAAGCTGCAGATC AAGGAGCTCTCCGGGGAGATCTACGGCGTCTCCCGCACGAACGCCAAGGACATGTACGAG TTCCCGTCGTGGATGACACGGCTCGACGCCGGCGCGCAGCTCACCATCGTCTACATCCAG GGCGGCCCCGCCGCCAAGATCGCCGTCGTCGAGTACAAGACGGCCTGAGAATGGCACGAC GACGACGACTGATTTCTGCCTTTCCTTTTTTCCATTTTAGTTTTGGTGTGTGGTTGGCTG CTGCTTTTCAGCAAACAGGTGGTGTGCAATCTCGAAGCAACGAGTCTGTGATGTCACCTC TGACCACGACTGCTTTGAGATGTGGACATGCACTGTTTCTTCTGTACTTGGAATGGCATA GGAGATCTCTCAGCTTTTCTTTTAGCTTTCGTGATTTCTCCATTCTTTCCGCTGTGCACG CCTGTGTGTTTTATATGTTCAAATTAAGCAGAAAACTGTGACATGATGTTTTTGCT