Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0672900-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:34342695:34345315:1 gene:Os04g0672900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0322F07.6 protein. (Os04t0672900-01);Similar to H0322F07.6 protein. (Os04t0672900-02)
Sequence

ATGGCAGAAGGCGACGCCTACGCCGCCTCGGCCGCGGCCTCCGCGGCGTCGCCGCGGACC
CCCGCGCCGCCGGAGACGCCGTCGACGCAGAAGAGGAGGCAGCGCGGGCTCGTGTCGCGG
GTGTGGAAGGGGATATTCGGGCGGCGCGAGGACGTCGAGAAGCTGCTCCAGGCGCTCTCC
AAGGAGGAGGAGGCCGTGCGCTCCCGCCTCCGCCGCCGCGCCCGCGCCTCCCGCCAGTCC
GCCCACAACGTCCTCGCCATCGCCGCCGCGCTCGAGATTGCGGCTGTTGGATATGCGATT
ATGACTACAAGATCACCGGACCTCAGCTGGCAGATGAGAGCAACCCGGGTGCTGCCCATG
TTCCTGATTCCTGCTTTAGCTGCTCTCATTTACTCAACTATTACAAGCGTCACGAAAATG
CTTGACAACAGAGATCAACATACTCTTGAAAACCTCCGTGCTGAAAGACAGGCTAAGATT
GATGAGTTGAAGGAGAGAACGAATTACTACACTACTCAACAACTTATACAGAGATATGAT
CTTGATCCTGCTGCAAAAGCTGCTGCAGCAACTGTTTTGGCATCTAAACTGGGTGCTGAT
TCTGGATTGAGAGTCTTCTTGGGAGATGAGTCGAATAGGGATGCAACATTGAGTAAAAGT
AATGATGCCCAAACTACTGGACCGAGGCAAAGAAAACCAGGACACTTGAGCAACAGCACT
GGAAGGACATACGGCCCTGAGTCATTAGGCGGTTCATATGCCTATGATGGTAATGAAGGT
GTCACCACTCCAAATCAGAGGACTGTTGACCACTTCAGAGGTCCAGCTGGTAATGATGGG
GGATGGCTCGCACGAGCAGCTGCTCTGCTTGTAGGGGAAGATCCAACTCAGTGCTATGCG
TTAATATGTGGCAACTGCCATATGCATAATGGTCTTGCAAGGAAAGAGGACTTTGCATTC
ATTACATATTACTGCCCGCACTGTAATGCCCTCAATGGACCACGGCAGCATGATGAGCAT
GAAATGGTATCTCCTGGTAAGGAGACTCCTATTTCTCATTCCGATGGCAGCATTGGCCAC
GCCGGTGCAAACCTTGCAAACTCAGGTGCCGGCAGCCCTATCGTGAAAGACTTACCCACG
GTTGAAGAATTACCTGCGGAAAGTTCTGTTGCTACTAACTTACCATCTGCCGAAGAACTA
CCTGCAGAAAGTCCTATTGCCAACAACTTACCAGCAGTTGAAGAATTAGCTGCAGAGAGT
CCTGTTGCCAGTAGCACACCTGCTATTGAAGAACTACCTGCAGAAGGTACCGTGGAGAAG
GCAAGTATTGATCATCCTGCCAGTTGA

Peptide Sequence

PEP ID

Os04t0672900-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:34342695:34345315:1 gene:Os04g0672900 transcript:Os04t0672900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0322F07.6 protein. (Os04t0672900-01);Similar to H0322F07.6 protein. (Os04t0672900-02)
Sequence

MAEGDAYAASAAASAASPRTPAPPETPSTQKRRQRGLVSRVWKGIFGRREDVEKLLQALS
KEEEAVRSRLRRRARASRQSAHNVLAIAAALEIAAVGYAIMTTRSPDLSWQMRATRVLPM
FLIPALAALIYSTITSVTKMLDNRDQHTLENLRAERQAKIDELKERTNYYTTQQLIQRYD
LDPAAKAAAATVLASKLGADSGLRVFLGDESNRDATLSKSNDAQTTGPRQRKPGHLSNST
GRTYGPESLGGSYAYDGNEGVTTPNQRTVDHFRGPAGNDGGWLARAAALLVGEDPTQCYA
LICGNCHMHNGLARKEDFAFITYYCPHCNALNGPRQHDEHEMVSPGKETPISHSDGSIGH
AGANLANSGAGSPIVKDLPTVEELPAESSVATNLPSAEELPAESPIANNLPAVEELAAES
PVASSTPAIEELPAEGTVEKASIDHPAS

Transcript Sequence

Transcript ID

Os04t0672900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:34342695:34345315:1 gene:Os04g0672900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0322F07.6 protein. (Os04t0672900-01);Similar to H0322F07.6 protein. (Os04t0672900-02)
Sequence

GTTTCCGAAAATTCGCCACGAAGAAACACGTACGAAATCCGCAGGGCAGCTTAGCGTTTT
CTTCTTCTCCGATCCGATCGGATTCCCCTGCCCCCGATCGCGGGAGCTGCCATGGCAGAA
GGCGACGCCTACGCCGCCTCGGCCGCGGCCTCCGCGGCGTCGCCGCGGACCCCCGCGCCG
CCGGAGACGCCGTCGACGCAGAAGAGGAGGCAGCGCGGGCTCGTGTCGCGGGTGTGGAAG
GGGATATTCGGGCGGCGCGAGGACGTCGAGAAGCTGCTCCAGGCGCTCTCCAAGGAGGAG
GAGGCCGTGCGCTCCCGCCTCCGCCGCCGCGCCCGCGCCTCCCGCCAGTCCGCCCACAAC
GTCCTCGCCATCGCCGCCGCGCTCGAGATTGCGGCTGTTGGATATGCGATTATGACTACA
AGATCACCGGACCTCAGCTGGCAGATGAGAGCAACCCGGGTGCTGCCCATGTTCCTGATT
CCTGCTTTAGCTGCTCTCATTTACTCAACTATTACAAGCGTCACGAAAATGCTTGACAAC
AGAGATCAACATACTCTTGAAAACCTCCGTGCTGAAAGACAGGCTAAGATTGATGAGTTG
AAGGAGAGAACGAATTACTACACTACTCAACAACTTATACAGAGATATGATCTTGATCCT
GCTGCAAAAGCTGCTGCAGCAACTGTTTTGGCATCTAAACTGGGTGCTGATTCTGGATTG
AGAGTCTTCTTGGGAGATGAGTCGAATAGGGATGCAACATTGAGTAAAAGTAATGATGCC
CAAACTACTGGACCGAGGCAAAGAAAACCAGGACACTTGAGCAACAGCACTGGAAGGACA
TACGGCCCTGAGTCATTAGGCGGTTCATATGCCTATGATGGTAATGAAGGTGTCACCACT
CCAAATCAGAGGACTGTTGACCACTTCAGAGGTCCAGCTGGTAATGATGGGGGATGGCTC
GCACGAGCAGCTGCTCTGCTTGTAGGGGAAGATCCAACTCAGTGCTATGCGTTAATATGT
GGCAACTGCCATATGCATAATGGTCTTGCAAGGAAAGAGGACTTTGCATTCATTACATAT
TACTGCCCGCACTGTAATGCCCTCAATGGACCACGGCAGCATGATGAGCATGAAATGGTA
TCTCCTGGTAAGGAGACTCCTATTTCTCATTCCGATGGCAGCATTGGCCACGCCGGTGCA
AACCTTGCAAACTCAGGTGCCGGCAGCCCTATCGTGAAAGACTTACCCACGGTTGAAGAA
TTACCTGCGGAAAGTTCTGTTGCTACTAACTTACCATCTGCCGAAGAACTACCTGCAGAA
AGTCCTATTGCCAACAACTTACCAGCAGTTGAAGAATTAGCTGCAGAGAGTCCTGTTGCC
AGTAGCACACCTGCTATTGAAGAACTACCTGCAGAAGGTACCGTGGAGAAGGCAAGTATT
GATCATCCTGCCAGTTGATCTTTTGTAAAGTAACTGCATATGTATTTGTTCATGGAGGGC
TTTTAAATGGCTCACGGTGGTTTTATAGTTTGCTGCACTGCTCGTTGCTCAGAAAGCACA
CAGCTTCTGTTCC