Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0671200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:34239841:34243087:-1 gene:Os04g0671200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYAMINE OXIDASE 4 description:Polyamine oxidase, Seed germination (Os04t0671200-01);Similar to H0624F09.9 protein. (Os04t0671200-02)
Sequence

ATGGATCCCAATAGCCTCAAAACTGGAGGCCTCTTGCTTCCGACCATTGAGAGGCAATGT
GCTTCGCCTCCATCCGTCATCGTGATCGGTGGGGGAATTTCAGGGGTTGCAGCAGCCCGT
GCTCTCTCCAATGCTTCGTTTGAGGTGACTGTTTTGGAGTCCAGAGATCGCGTAGGCGGT
CGTGTCCATACCGATTACTCTTTCGGATGCCCAATTGATATGGGAGCCTCATGGCTCCAC
GGCGTTTGTAATGAGAACTCCTTGGCACCATTGATTGGCTATCTTGGGCTGAAATTATAT
CGCACTAGTGGCGACAACTCTGTTCTGTATGATCATGATTTAGAAAGTTATGCACTCTTT
GATAAGGCTGGCCATCAGGTCTCAAAGGAGACAGTTGCTAAAGTTGAAGAAACATTTGAA
AGAATTCTTGATGAGACAGTTAAAGTGCGTGATGAGCAGGAACATGACATGCCCCTTCTA
CAGGCGATTTCACTTGTTCTTGAGAGGCACCCCCATCTGAAGTTACAAGGGATAGATGAT
CAAGTCTTGCAATGGTGTGTCTGTCGGCTTGAGGCATGGTTTGCTGCAGATGCTGATGAA
ATATCTCTGAAAAACTGGGATCAGGAGCATGTTCTTACCGGTGGCCATGGTCTGATGGTG
AACGGATACTATCCTATAATTCAGGCTCTTGCACAAGGTCTAGATATCCGGCTTAATCAA
AGGGTAACCAAAATTGCCCGCCAATTCAATGGAGTGACAGTTACCACTGAAGATGGAACA
AGTTACTCTGCCGATGCTTGCATCATTACAGTACCGCTCGGTGTGCTCAAGGCAAACATA
ATCAAGTTCGAGCCTGAGTTGCCCTCATGGAAGAGCTCTGCAATCGCAGACCTTGGTGTC
GGTATCGAGAACAAGATCGCCATGCACTTCGATACAGTCTTCTGGCCTAATGTTGAGGTG
CTGGGAATGGTTGGCCCAACGCCTAAAGCATGTGGGTACTTCCTGAACCTCCACAAGGCC
ACCGGCAATCCGGTCCTCGTCTACATGGCCGCCGGTAGATTTGCTCAAGAAGTGGAAAAA
CTGTCAGACAAGGAGGCCGTTGATCTGGTCATGTCTCACCTGAAGAAAATGCTACCTGAC
GCCACTGAACCTACGAAGTATTTGGTTTCACGCTGGGGTTCTGACCCGAACTCGCTGGGT
TCCTACTCGTGCGACCTGGTCGGGAAGCCGGCCGACGTGTCGGCGCGGTTCGCCGCACCG
GTGGAGAACCTCTACTTCGCCGGCGAGGCGGCCAGCGCCGACCACTCGGGGTCCGTCCAC
GGCGCCTACTCGTCGGGGATCGCCGCCGCCGATGAGTGCCGGAAGCGCATCCTGATGCAG
AAGGGCATCCCTGACCTCGTCCAGGTCAAGGCCTACGAGGAGATGGCCGGAGTCATTGCT
CCCCTTCAGATTTGCAGGACCTGA

Peptide Sequence

PEP ID

Os04t0671200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:34239841:34243087:-1 gene:Os04g0671200 transcript:Os04t0671200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYAMINE OXIDASE 4 description:Polyamine oxidase, Seed germination (Os04t0671200-01);Similar to H0624F09.9 protein. (Os04t0671200-02)
Sequence

MDPNSLKTGGLLLPTIERQCASPPSVIVIGGGISGVAAARALSNASFEVTVLESRDRVGG
RVHTDYSFGCPIDMGASWLHGVCNENSLAPLIGYLGLKLYRTSGDNSVLYDHDLESYALF
DKAGHQVSKETVAKVEETFERILDETVKVRDEQEHDMPLLQAISLVLERHPHLKLQGIDD
QVLQWCVCRLEAWFAADADEISLKNWDQEHVLTGGHGLMVNGYYPIIQALAQGLDIRLNQ
RVTKIARQFNGVTVTTEDGTSYSADACIITVPLGVLKANIIKFEPELPSWKSSAIADLGV
GIENKIAMHFDTVFWPNVEVLGMVGPTPKACGYFLNLHKATGNPVLVYMAAGRFAQEVEK
LSDKEAVDLVMSHLKKMLPDATEPTKYLVSRWGSDPNSLGSYSCDLVGKPADVSARFAAP
VENLYFAGEAASADHSGSVHGAYSSGIAAADECRKRILMQKGIPDLVQVKAYEEMAGVIA
PLQICRT

Transcript Sequence

Transcript ID

Os04t0671200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:34239841:34243087:-1 gene:Os04g0671200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYAMINE OXIDASE 4 description:Polyamine oxidase, Seed germination (Os04t0671200-01);Similar to H0624F09.9 protein. (Os04t0671200-02)
Sequence

GAGGATTTGGAGTTGAATTGTGGGGAGGGGGACCTCGCGGGTGTTGCCGGTTTGGAGCCC
AAGATAGGGTTATGAGCTGCTTCGCGGACCGCCGCTGCTACGCCGCCAGCCGCCGCCAGG
ACGGCCTCCTCGTGTTCATGTTCTTCATCTCGATTCCCATACGTACTAGTAGCAGTAGTA
GTAATAATTGTAATTCCAGTAGTAGTATTAGTAGTAATCTCCTGTAAGCGGAGTTCCTCC
TCGCGGCTGCGTGTACGGGGACGGGAGGACCTTCTTCCTCTTCGTGTTCATCTTCTTCTT
CTTCTTCCTCTCTTCCTTCGGCTTCGGCGCTGGCGGCTATGGATCCCAATAGCCTCAAAA
CTGGAGGCCTCTTGCTTCCGACCATTGAGAGGCAATGTGCTTCGCCTCCATCCGTCATCG
TGATCGGTGGGGGAATTTCAGGGGTTGCAGCAGCCCGTGCTCTCTCCAATGCTTCGTTTG
AGGTGACTGTTTTGGAGTCCAGAGATCGCGTAGGCGGTCGTGTCCATACCGATTACTCTT
TCGGATGCCCAATTGATATGGGAGCCTCATGGCTCCACGGCGTTTGTAATGAGAACTCCT
TGGCACCATTGATTGGCTATCTTGGGCTGAAATTATATCGCACTAGTGGCGACAACTCTG
TTCTGTATGATCATGATTTAGAAAGTTATGCACTCTTTGATAAGGCTGGCCATCAGGTCT
CAAAGGAGACAGTTGCTAAAGTTGAAGAAACATTTGAAAGAATTCTTGATGAGACAGTTA
AAGTGCGTGATGAGCAGGAACATGACATGCCCCTTCTACAGGCGATTTCACTTGTTCTTG
AGAGGCACCCCCATCTGAAGTTACAAGGGATAGATGATCAAGTCTTGCAATGGTGTGTCT
GTCGGCTTGAGGCATGGTTTGCTGCAGATGCTGATGAAATATCTCTGAAAAACTGGGATC
AGGAGCATGTTCTTACCGGTGGCCATGGTCTGATGGTGAACGGATACTATCCTATAATTC
AGGCTCTTGCACAAGGTCTAGATATCCGGCTTAATCAAAGGGTAACCAAAATTGCCCGCC
AATTCAATGGAGTGACAGTTACCACTGAAGATGGAACAAGTTACTCTGCCGATGCTTGCA
TCATTACAGTACCGCTCGGTGTGCTCAAGGCAAACATAATCAAGTTCGAGCCTGAGTTGC
CCTCATGGAAGAGCTCTGCAATCGCAGACCTTGGTGTCGGTATCGAGAACAAGATCGCCA
TGCACTTCGATACAGTCTTCTGGCCTAATGTTGAGGTGCTGGGAATGGTTGGCCCAACGC
CTAAAGCATGTGGGTACTTCCTGAACCTCCACAAGGCCACCGGCAATCCGGTCCTCGTCT
ACATGGCCGCCGGTAGATTTGCTCAAGAAGTGGAAAAACTGTCAGACAAGGAGGCCGTTG
ATCTGGTCATGTCTCACCTGAAGAAAATGCTACCTGACGCCACTGAACCTACGAAGTATT
TGGTTTCACGCTGGGGTTCTGACCCGAACTCGCTGGGTTCCTACTCGTGCGACCTGGTCG
GGAAGCCGGCCGACGTGTCGGCGCGGTTCGCCGCACCGGTGGAGAACCTCTACTTCGCCG
GCGAGGCGGCCAGCGCCGACCACTCGGGGTCCGTCCACGGCGCCTACTCGTCGGGGATCG
CCGCCGCCGATGAGTGCCGGAAGCGCATCCTGATGCAGAAGGGCATCCCTGACCTCGTCC
AGGTCAAGGCCTACGAGGAGATGGCCGGAGTCATTGCTCCCCTTCAGATTTGCAGGACCT
GAAAAAACTGAACCTGCTCCACCCTGCCATTGTCATGGAATCTGGATTGATTCAATTGCC
ATGCCTATGCCCTGGAATCTTGATGATTCAATCACTCATACAAGTTCAAGTTCATGTAGG
GGATTAACTGCATGAATCAAAATTATTAATTAATAATTATGTAATTGTCATGTTATTATT
GAATAAATAAATCGAGATCATGCTTGAGATCTTTGTACTGGGACACAGTTTCAATTAATT
AATGCTAGTAACAACCTTGGAG