Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0670800-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:34218060:34222338:1 gene:Os04g0670800 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os04t0670800-01);UBX domain containing protein. (Os04t0670800-02)
Sequence

GTTCGGCCTAATTCAACAGTTGCATTTCGTAACTTTGAAGAGGAGTCAAGGCAATCTGCT
GTTTGGGATTCTGAGCAGAATGCTGCATCTAGTTCTCGTGATAATCTGGCGGCATTGTAT
CGTCCACCATTTGCTTTGATGTTCAATGGACCCTTCGACAAGGCAAAGTTAGAGGCTTCT
GTTCTGGACAAGTGGCTCTTGATCAATTTGCAATCGACTGAAGAGTTCAGCTCTCACATG
CTTAATCGGGACACTTGGGCTAATGAGGCTGTGGCTCAGACAATTCGATCGAACTTTATT
TTCTGGCAGGTTTACCATGACACCAGTGAGGGGAGGAAGGTATGCACCTACTACAATTTG
GTCTCTGTTCCTGCCATTCTTCTGATTGACCCTATCACTGGGCAAAAAATGCGTGGGTGG
AATGGAATGATTCACCCGGACCGTTTGCTGGAGGATTTGATGCCTTACCTGGACAAAGGT
CCAAAGGAGCACCATGCAGCTCAACCTCAAAAACGGCCAAGAAAAGTTGATCAGGAAACT
TCTATCGGCAAACAAGGTAAAACCCCTGTACCCGTAGTAGCCACAGAGGATGAAGACGAA
GAACTAGCACGGGCAGTAGCGGCTTCTCTTGAGGAGAGTAAAGGCTCTGACACTAGTGAG
GAAAAGATTGAACCTGAGGTAGAAAATGAGCCTAGCCTGAGTGCTAAGCTGAACTATCCT
CCTCTCCCTGAAGAACCCAAAGGAAGTCGGGAGCTTTTGTGCAGAGTTGCAATTCGCCTA
CCTGATGGTAGGAGGATCCAGAGGAATTTCCTTCACACGGATCCTATTAAGCTCCTGTGG
TCATTCTGCTATCCTCAAGTGGAGGACGGGGATAAGAAGGCTTTCCATTTCGTACAGCCC
ATTCCTAGGGCATCCACAAACCTGGAGTACGAGAGTGATAAAACTTTCAAAGAAGCCGGG
TTGGCCAACTCGATGATCAACCTTTTGTGGGACTAA

Peptide Sequence

PEP ID

Os04t0670800-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:34218060:34222338:1 gene:Os04g0670800 transcript:Os04t0670800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os04t0670800-01);UBX domain containing protein. (Os04t0670800-02)
Sequence

VRPNSTVAFRNFEEESRQSAVWDSEQNAASSSRDNLAALYRPPFALMFNGPFDKAKLEAS
VLDKWLLINLQSTEEFSSHMLNRDTWANEAVAQTIRSNFIFWQVYHDTSEGRKVCTYYNL
VSVPAILLIDPITGQKMRGWNGMIHPDRLLEDLMPYLDKGPKEHHAAQPQKRPRKVDQET
SIGKQGKTPVPVVATEDEDEELARAVAASLEESKGSDTSEEKIEPEVENEPSLSAKLNYP
PLPEEPKGSRELLCRVAIRLPDGRRIQRNFLHTDPIKLLWSFCYPQVEDGDKKAFHFVQP
IPRASTNLEYESDKTFKEAGLANSMINLLWD

Transcript Sequence

Transcript ID

Os04t0670800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:34218060:34222338:1 gene:Os04g0670800 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os04t0670800-01);UBX domain containing protein. (Os04t0670800-02)
Sequence

CGTTCGGCCTAATTCAACAGTTGCATTTCGTAACTTTGAAGAGGAGTCAAGGCAATCTGC
TGTTTGGGATTCTGAGCAGAATGCTGCATCTAGTTCTCGTGATAATCTGGCGGCATTGTA
TCGTCCACCATTTGCTTTGATGTTCAATGGACCCTTCGACAAGGCAAAGTTAGAGGCTTC
TGTTCTGGACAAGTGGCTCTTGATCAATTTGCAATCGACTGAAGAGTTCAGCTCTCACAT
GCTTAATCGGGACACTTGGGCTAATGAGGCTGTGGCTCAGACAATTCGATCGAACTTTAT
TTTCTGGCAGGTTTACCATGACACCAGTGAGGGGAGGAAGGTATGCACCTACTACAATTT
GGTCTCTGTTCCTGCCATTCTTCTGATTGACCCTATCACTGGGCAAAAAATGCGTGGGTG
GAATGGAATGATTCACCCGGACCGTTTGCTGGAGGATTTGATGCCTTACCTGGACAAAGG
TCCAAAGGAGCACCATGCAGCTCAACCTCAAAAACGGCCAAGAAAAGTTGATCAGGAAAC
TTCTATCGGCAAACAAGGTAAAACCCCTGTACCCGTAGTAGCCACAGAGGATGAAGACGA
AGAACTAGCACGGGCAGTAGCGGCTTCTCTTGAGGAGAGTAAAGGCTCTGACACTAGTGA
GGAAAAGATTGAACCTGAGGTAGAAAATGAGCCTAGCCTGAGTGCTAAGCTGAACTATCC
TCCTCTCCCTGAAGAACCCAAAGGAAGTCGGGAGCTTTTGTGCAGAGTTGCAATTCGCCT
ACCTGATGGTAGGAGGATCCAGAGGAATTTCCTTCACACGGATCCTATTAAGCTCCTGTG
GTCATTCTGCTATCCTCAAGTGGAGGACGGGGATAAGAAGGCTTTCCATTTCGTACAGCC
CATTCCTAGGGCATCCACAAACCTGGAGTACGAGAGTGATAAAACTTTCAAAGAAGCCGG
GTTGGCCAACTCGATGATCAACCTTTTGTGGGACTAAAAGCCTATTTTATCAACTCATGT
TATTTCTTTATTGGCTCCAAGTCAAGATTATCGAGTGATTTTCTGTGAGGGTTCATAATT
GCTTCTCTTATTTTTCTTTTTCCCTCCTGGTGCTTGGAGCCAAATGACGAATCTGGTTTC
TTTGGTGTGGAAATGCCCATATTCCTTTTGTAGTGGTTCCTAGTATGTTTATAGAACTCT
TGAGTAGGTTTACTCCAGTTCTCTTTTAATGCATATAATATTATTATACCTG