Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0667400-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:34067654:34070800:-1 gene:Os04g0667400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA135 description:2OG-Fe(II) oxygenase domain containing protein. (Os04t0667400-01)
Sequence

ATGCCCGCCGTGGCCGGGAGCTTGTACATGGCGAGCCAGCACAAGGGAGTGCCTCCGCCG
CTGCCGCCGCCGCCGCGGCCATTGCCGGTGATCAACCTGGGCCGGCTCACCATGGACAGT
GCCTCGCGGGCGCTCGCCGTGCGGGATATCGTGCTGGCGTGCCGTGAACGTGGCTGCTTT
GAGGTGGTGAACCATGGCATCAGCAGGTCTTGCATGAATGGCGCCCTCGAAGCCGCCTCC
GAGTTCTTCCAGCTATCGACGGAGCGCAAGGAGGAGTTCGCGTCGGACGACATCCGGCAG
CCCATCAGGTACGACACGAGCTCGAGGGACGGGATCAGCATGTCCAGGTCATTTCTGAAG
CACTATGCCAATCCCCTGGACGACTGGATCAAGTTCTGGCCGACGCAGCCACCAACTTAC
AGGGAGAAAATGGGTGAGTACGCCGTGGAGACGCAGCGAGTGTCAATGCAGCTCATGGAA
GCAATCCTGCAGGGCCTGGGATTAGGGCCATCGTACCTGCAAGAAAAGCTTGAAGGAGGG
GTGCAGTTCGTGGCCTTGAACAACTACCCGCAGTCATCGGCGAAGAAAGCCGACAAGATC
GGCTTGGCTCCTCACTCTGATTATGGCTTCCTCACCATCCTGTTGCAGAGCTCCCCAGGG
CTTGAGGTGATGCACCATGAGGATGATGCCTGGACATCTGTCCCTGCTATCCCTGGGGCT
CTCCATGTCCATGTAGGAGACCACCTGGAAGTGTTGAGCAATGGCCAGCTCAAGTCCCTT
GTCCATCGAGCCGTTCTCAACCCAAACGAGTCAAGGATTTCTATTGCCAGCATCCATGGT
CTCTCGATGGATGAAGAGGTCCACTGCGCCGAAGAGCTCGTCGATGAACACCACCCCAAA
ATGTACAGGGGAAGCAGCTTCCAGGACTTCCTGGACTTCCTGCCAGCAAACATGAACAGG
TATAAGAGGTATGTCGAGAGCCTCAGGATCGACAAACCCTGA

Peptide Sequence

PEP ID

Os04t0667400-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:34067654:34070800:-1 gene:Os04g0667400 transcript:Os04t0667400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA135 description:2OG-Fe(II) oxygenase domain containing protein. (Os04t0667400-01)
Sequence

MPAVAGSLYMASQHKGVPPPLPPPPRPLPVINLGRLTMDSASRALAVRDIVLACRERGCF
EVVNHGISRSCMNGALEAASEFFQLSTERKEEFASDDIRQPIRYDTSSRDGISMSRSFLK
HYANPLDDWIKFWPTQPPTYREKMGEYAVETQRVSMQLMEAILQGLGLGPSYLQEKLEGG
VQFVALNNYPQSSAKKADKIGLAPHSDYGFLTILLQSSPGLEVMHHEDDAWTSVPAIPGA
LHVHVGDHLEVLSNGQLKSLVHRAVLNPNESRISIASIHGLSMDEEVHCAEELVDEHHPK
MYRGSSFQDFLDFLPANMNRYKRYVESLRIDKP

Transcript Sequence

Transcript ID

Os04t0667400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:34067654:34070800:-1 gene:Os04g0667400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA135 description:2OG-Fe(II) oxygenase domain containing protein. (Os04t0667400-01)
Sequence

CTGACAAGTTTTAGAATGGTCGGTTGAACACCCAAACTTTCTACGTCAAATGTAAGATTT
ACCAGTTTTTTTTTCATAAGGCATACAAACTTTTTTTTTTCATACGATCACCCCACGTAT
TGGACTTAATATCTTGTCTAGTTTAGTCCAGGGTGTAGTCACCATTTTGCTCGCACGAAT
TTTCTGTGGCTCTTATCTAATGTTAGACGTGGCAAGATTAGCCATCAACCAAACACCTCG
TCAATAGCAGAGAGGGTGTGATGTCACCGTGTTAAATTTTGACAATAAACCAAACAATAG
CCAAAAAGGTGATCAAATTTGGTTAAAAAGTGTGATAAACTACGCCAATGGGACCAAAAG
GACCTCAGAAGTATCTTCCGCTGAAAAAGTATCAAAAAAATTCACAAAAAGGGAATTACC
AGCGAAAAGAAAACTAAGAAAAGTTTAAAGCACCGTATCCTGTTTTATTTTCTCTTTCTT
GGAGCACTTTTGTTTTTATCTAATAACGATGATTACCTGCTCGTTGAGAAAAGTTCTCTA
TTTGTTCTTTGCCACTCGCTACAACATGGGAAGTGTGCTACTATTCCAACACTTGGAGTA
CTATTTTTACGCAATAACGATGATTACCTGCTCGTTAAGAAAAGCTTTCTACTTGTTCTT
TGCCACTCGCTACAACATGGGAAGTGCTAGCACTACTATTCTAACGTGGAAAAGCAAGGC
TGTTGCTTTCCCCCCCTTGAAACTGAAAAAAAAAGGAGCCATTTTGTCATGTCCCAGAAT
CCAAAACCGGAAACCCCCCCTCTGCATCGGCAGGTCTCCTCCCCCCAACTTTGCCGCGGG
ATTCGTCGTCTCCATCACCACCGTGAGCAAAAGACCCACCACCACAAGTCACCCCCAACT
CCGCCTGAAAAACAAGCATTATCCAGGGATAGACAGAGAGAGAAAGCAAAGCGGGATGCA
CCCAGCGGCAACTCGCAGGCTGAGGGAGGAATAACAAAATGTTCGGCAGGCAGCAGGGTC
ACTCATCACAGTCACAGATCGACGGCGACACAGCTGGTGGCCACTATCTTGGATCGAAAT
GGCCTGCACCTGTAGCTGCTCATCTGGACTTACTAAGCATGCACTACTACGAAGTAAGTA
GTGGTAGTAGTAGTTGTGTTGTGTGTGCATACGCAAACGCAACGCAAGATGAGGAGGTGA
GCCAATTGCCTGCTCCTGGACAGAATCGCCCTGAAAAGCCCCAATATTGATTTGGCCGAT
ACAAGATGGTCTACGTGCAGGGGATTTACCCGCTGCCCAGTTGGCTCTATGCCATGCCGC
TTTCAGTCTCTCTGATGCTGCAGATTCATCAGAGCTTATAAATACTTGGGCATCTGTGCT
GTGCTGGAGGCATCCTGTGTTCTCAGGAGGTAGTAGTGCAGTGCAGTGCAGTGTAGAGAC
CTGTCCTCTGTGTTGTTTGCTCTCAAGCTCGCCGGAGAAGATAGAAGGGTGGCATGCCCG
CCGTGGCCGGGAGCTTGTACATGGCGAGCCAGCACAAGGGAGTGCCTCCGCCGCTGCCGC
CGCCGCCGCGGCCATTGCCGGTGATCAACCTGGGCCGGCTCACCATGGACAGTGCCTCGC
GGGCGCTCGCCGTGCGGGATATCGTGCTGGCGTGCCGTGAACGTGGCTGCTTTGAGGTGG
TGAACCATGGCATCAGCAGGTCTTGCATGAATGGCGCCCTCGAAGCCGCCTCCGAGTTCT
TCCAGCTATCGACGGAGCGCAAGGAGGAGTTCGCGTCGGACGACATCCGGCAGCCCATCA
GGTACGACACGAGCTCGAGGGACGGGATCAGCATGTCCAGGTCATTTCTGAAGCACTATG
CCAATCCCCTGGACGACTGGATCAAGTTCTGGCCGACGCAGCCACCAACTTACAGGGAGA
AAATGGGTGAGTACGCCGTGGAGACGCAGCGAGTGTCAATGCAGCTCATGGAAGCAATCC
TGCAGGGCCTGGGATTAGGGCCATCGTACCTGCAAGAAAAGCTTGAAGGAGGGGTGCAGT
TCGTGGCCTTGAACAACTACCCGCAGTCATCGGCGAAGAAAGCCGACAAGATCGGCTTGG
CTCCTCACTCTGATTATGGCTTCCTCACCATCCTGTTGCAGAGCTCCCCAGGGCTTGAGG
TGATGCACCATGAGGATGATGCCTGGACATCTGTCCCTGCTATCCCTGGGGCTCTCCATG
TCCATGTAGGAGACCACCTGGAAGTGTTGAGCAATGGCCAGCTCAAGTCCCTTGTCCATC
GAGCCGTTCTCAACCCAAACGAGTCAAGGATTTCTATTGCCAGCATCCATGGTCTCTCGA
TGGATGAAGAGGTCCACTGCGCCGAAGAGCTCGTCGATGAACACCACCCCAAAATGTACA
GGGGAAGCAGCTTCCAGGACTTCCTGGACTTCCTGCCAGCAAACATGAACAGGTATAAGA
GGTATGTCGAGAGCCTCAGGATCGACAAACCCTGAAGAGGAACAGTGGTAGTGCTGTATC
AGAACATATATAGCAAGATGGCATTATTCGGATAAAGTATTTAAACCACCTAAAAACTCC
TACTTCGGGAAGTTTGTTCGACTTTATGTTGGATTGTTGGTCAAAGAAAAAGTGATGTCA
ATCTGTACTGTGCAACACTGTAACACATGTAATCAATATTTAGTTATACATCCTTAGTAA
CTATAGCTACAAGAGTACGTACAGTT