Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0654800-00
CDS Infomation	cds chromosome:IRGSP-1.0:4:33399564:33402242:-1 gene:Os04g0654800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147J19.7 protein. (Os04t0654800-00)
Sequence	ATGACGGTACACACTATCTCAATTGGGAAATGTCACTGTCAGCAGGCTAGCCACATTCTT TCCCCTTTTAAACCAGTTTTTAAGTTGGAAGTTGGAACTCACGCCTCCAGCCCTGTGGGG TTAGGATACACGATGAATCGAGTCCATGGCTTGCACTTGATCGTACTCACCTCCCTGTGT TGCGTTGCTCTTTCGGCGGGCGAGGGCGATCGCCGCAGCGTTCTGTGGCGCGGCGGCTCC ATCGCCGTGGAGGACGCCGCCGACAGCGTCCTCGTGTCGCCGAGCGGCAACTTCTCGTGC GGCTTCTACAAGGTGGCGACCAACGCCTACACGCTCGCCGTCTGGTTCACCGCGTCCGCC GACGCCACCGTCGCGTGGACGGCCAACCGCGACACCCCCGTGAACGGCGTCGGCTCGCGC GCCGAGCTCCGCAAGGACGGCTCGCTGGTGCTGCAGGACTACGACGGCCGCGTCGTGTGG AGCACCAACACCAGCGGCACGCCGGCCGACCGCGCCCAGCTCCTCGACACCGGCAACCTC GTCGTCTCCGACGCCGCCGGCAACCGGCTGTGGCAGAGCTTCGACTGGCCCACGGACACG CTCCTGCCGGAGCAGCCCGTGACGCGGTACAGGCAGCTCGTGTCCGCCGAGGCGAGGGGC TCCCCGTACTCCGGCTACTACAAGTTCTACTTCGACAGCAGCAACATCCTCAACCTGATG TACGACGGACCGGAGATCAGCAGCAACTACTGGCCGGACCCCTTCAAGAAGTGGTGGGAC AACAACCGGACGGCGTTCAACAGCAGCCGCCACGGCAGCTTCGACCGCCGCGGCGTCTTC ACGGCGAGCGACCAGCTGCAGTTCAACGCCTCCGACATGGGCGACGGAGGCGTCATGAGG CGGCTCACGCTCGACTACGACGGCAACCTCCGCCTCTACAGCCTCGACGCCGCCGCCGGG CGCTGGCACGTCACGTGGGTCGCGGTCCAGAGGCAGTGCGACGTGCACGGTTTGTGCGGC CGCTACGGCATATGCACGTACAGCCAAGGCCCGACGTGCTCCTGCCCCGACGGCTATGTG CCTCACGACGCGAGCGACTGGAGCAAGGGATGCCGGCGCACGTTCGACGTCAGGTGCGGC GAGGACGTCGCGTTCGCCGAGATGCGGCACACCGACTACTGGGGCTTCGACCTCAACTAC ACCGCCGGGATCTCGTTTGACACGTGCCGGCGTCTCTGCCTCGTCGACTGCCGCTGCGAG GCGTTCGGTTACCGGCAGGGCACCGGTGAGTGCTACCCCAAGATCTCTCTCTGGAACGGC CGGGTTATGAGCATTCCGTACCAAACCATCTACCTCAAGTTCCCTACGGGTGCCAAGAAC CTGAACCCGTCCTTGCTGCACTTCGATGGCCACACCTGCACCATGGACGAACGGGACGCT ACGGTCAGCAGCTCGTACCTTCATGGCAGGCGCAACACGATAAACTTCATCTACTTCTAC AGCTTCCTCGCGGTTGTGTTCGTCGTGGAGGCCATTTTTGTCGTCGTGGGTTACCTGTTT GTCTTTCGAGCTGACTCCGTGGCGGCAGGACGGGTCGGTGATGAAGGGTACAGCTTGGTG TTTAGCCATTTCCGGAGGTTCACCTACGACGAGCTATCAGACGCGACGTGCGGATTCAGA GACGAGATTGCTAAGGGCGGGACGGGATCCGTGTACAAGGGTGTTCTTGAGGATGGCCGG AGCATCGCCGTGAAGCGGCTGGACGAGATGACGCAGGCCGACGAGGTGTTCCGGTCGGAG CTGAGCGTCATCGGGCGGATCAACCACATGAACCTCGTCAGGATATGGGGCTTCTGCTCG GAGCACCCGCACCGCCTCCTCGTCTCCGAGTTCGTCGAGAACGGCTCGCTCGACAAGGCC CTCTTCTGCGACGACGGCGAGAGCTCCGGTGTGGTGGTGTTACCATGGCGGTCGAGGTAC AAGATCGCCGTGGGCGTCGCGAAGGCGCTGGCGTACCTCCACCACGAGTGCCTGGAGTGG ATCGTGCACTGCGACGTGAAGCCGGAGAACATCCTGCTCGACGGCGACTTCGAGCCCAAG GTGACGGACTTCGGCCTCGTCAAGCTGCTGAGCCGCGACGCCGGCAGCCACATGGCGCTG TCGCGGGTGCAGGGGACCAGGGGCTACATTACGCCAGAGTGCTGGACAGTTGGTCGCTCG ATCAACGGCAAAGCCGACGTGTACAGCTTCGGCGTCGTGCTCCTCGAGCTGGTCAGGGGG CAGAGGGTGTGCGACTGGGTAGCGGCTGCGGCGACGGCCGACGGGGCATGGAATGTCCAG CGACTGGCCGTGTGGCTCAAGGAGAAGCTGAAGTGCGACGACGGCGAGCTGCCGGCGTGG CTGGAGGAGCTCGTGGACGCGCGGCTGCGCGGTGACTTCAACCATGTGCAGGCAGCCGGG TTGCTGGAGCTGGCGGTTTCGTGCGTGGACGGTGAGCCTAGCAGGCGGCCGAGCATGAGC ACGGTTGTTCATAAGCTCATCTCGTTGGACACGATAGAACATCATCTCTACGCCACTCAT GAGCTAGCAGCAAATGCAGCAGTCGTGAGTCTCGTTGGCGACGTTGGGGGCATCAATTGC GTCTGCCGTGTTGAAGACTTGAATTGTTTTTCTTGTTAG

Peptide Sequence

PEP ID	Os04t0654800-00
PEP Infomation	pep chromosome:IRGSP-1.0:4:33399564:33402242:-1 gene:Os04g0654800 transcript:Os04t0654800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147J19.7 protein. (Os04t0654800-00)
Sequence	MTVHTISIGKCHCQQASHILSPFKPVFKLEVGTHASSPVGLGYTMNRVHGLHLIVLTSLC CVALSAGEGDRRSVLWRGGSIAVEDAADSVLVSPSGNFSCGFYKVATNAYTLAVWFTASA DATVAWTANRDTPVNGVGSRAELRKDGSLVLQDYDGRVVWSTNTSGTPADRAQLLDTGNL VVSDAAGNRLWQSFDWPTDTLLPEQPVTRYRQLVSAEARGSPYSGYYKFYFDSSNILNLM YDGPEISSNYWPDPFKKWWDNNRTAFNSSRHGSFDRRGVFTASDQLQFNASDMGDGGVMR RLTLDYDGNLRLYSLDAAAGRWHVTWVAVQRQCDVHGLCGRYGICTYSQGPTCSCPDGYV PHDASDWSKGCRRTFDVRCGEDVAFAEMRHTDYWGFDLNYTAGISFDTCRRLCLVDCRCE AFGYRQGTGECYPKISLWNGRVMSIPYQTIYLKFPTGAKNLNPSLLHFDGHTCTMDERDA TVSSSYLHGRRNTINFIYFYSFLAVVFVVEAIFVVVGYLFVFRADSVAAGRVGDEGYSLV FSHFRRFTYDELSDATCGFRDEIAKGGTGSVYKGVLEDGRSIAVKRLDEMTQADEVFRSE LSVIGRINHMNLVRIWGFCSEHPHRLLVSEFVENGSLDKALFCDDGESSGVVVLPWRSRY KIAVGVAKALAYLHHECLEWIVHCDVKPENILLDGDFEPKVTDFGLVKLLSRDAGSHMAL SRVQGTRGYITPECWTVGRSINGKADVYSFGVVLLELVRGQRVCDWVAAAATADGAWNVQ RLAVWLKEKLKCDDGELPAWLEELVDARLRGDFNHVQAAGLLELAVSCVDGEPSRRPSMS TVVHKLISLDTIEHHLYATHELAANAAVVSLVGDVGGINCVCRVEDLNCFSC

Transcript Sequence

Transcript ID	Os04t0654800-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:33399564:33402242:-1 gene:Os04g0654800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147J19.7 protein. (Os04t0654800-00)
Sequence	ATGACGGTACACACTATCTCAATTGGGAAATGTCACTGTCAGCAGGCTAGCCACATTCTT TCCCCTTTTAAACCAGTTTTTAAGTTGGAAGTTGGAACTCACGCCTCCAGCCCTGTGGGG TTAGGATACACGATGAATCGAGTCCATGGCTTGCACTTGATCGTACTCACCTCCCTGTGT TGCGTTGCTCTTTCGGCGGGCGAGGGCGATCGCCGCAGCGTTCTGTGGCGCGGCGGCTCC ATCGCCGTGGAGGACGCCGCCGACAGCGTCCTCGTGTCGCCGAGCGGCAACTTCTCGTGC GGCTTCTACAAGGTGGCGACCAACGCCTACACGCTCGCCGTCTGGTTCACCGCGTCCGCC GACGCCACCGTCGCGTGGACGGCCAACCGCGACACCCCCGTGAACGGCGTCGGCTCGCGC GCCGAGCTCCGCAAGGACGGCTCGCTGGTGCTGCAGGACTACGACGGCCGCGTCGTGTGG AGCACCAACACCAGCGGCACGCCGGCCGACCGCGCCCAGCTCCTCGACACCGGCAACCTC GTCGTCTCCGACGCCGCCGGCAACCGGCTGTGGCAGAGCTTCGACTGGCCCACGGACACG CTCCTGCCGGAGCAGCCCGTGACGCGGTACAGGCAGCTCGTGTCCGCCGAGGCGAGGGGC TCCCCGTACTCCGGCTACTACAAGTTCTACTTCGACAGCAGCAACATCCTCAACCTGATG TACGACGGACCGGAGATCAGCAGCAACTACTGGCCGGACCCCTTCAAGAAGTGGTGGGAC AACAACCGGACGGCGTTCAACAGCAGCCGCCACGGCAGCTTCGACCGCCGCGGCGTCTTC ACGGCGAGCGACCAGCTGCAGTTCAACGCCTCCGACATGGGCGACGGAGGCGTCATGAGG CGGCTCACGCTCGACTACGACGGCAACCTCCGCCTCTACAGCCTCGACGCCGCCGCCGGG CGCTGGCACGTCACGTGGGTCGCGGTCCAGAGGCAGTGCGACGTGCACGGTTTGTGCGGC CGCTACGGCATATGCACGTACAGCCAAGGCCCGACGTGCTCCTGCCCCGACGGCTATGTG CCTCACGACGCGAGCGACTGGAGCAAGGGATGCCGGCGCACGTTCGACGTCAGGTGCGGC GAGGACGTCGCGTTCGCCGAGATGCGGCACACCGACTACTGGGGCTTCGACCTCAACTAC ACCGCCGGGATCTCGTTTGACACGTGCCGGCGTCTCTGCCTCGTCGACTGCCGCTGCGAG GCGTTCGGTTACCGGCAGGGCACCGGTGAGTGCTACCCCAAGATCTCTCTCTGGAACGGC CGGGTTATGAGCATTCCGTACCAAACCATCTACCTCAAGTTCCCTACGGGTGCCAAGAAC CTGAACCCGTCCTTGCTGCACTTCGATGGCCACACCTGCACCATGGACGAACGGGACGCT ACGGTCAGCAGCTCGTACCTTCATGGCAGGCGCAACACGATAAACTTCATCTACTTCTAC AGCTTCCTCGCGGTTGTGTTCGTCGTGGAGGCCATTTTTGTCGTCGTGGGTTACCTGTTT GTCTTTCGAGCTGACTCCGTGGCGGCAGGACGGGTCGGTGATGAAGGGTACAGCTTGGTG TTTAGCCATTTCCGGAGGTTCACCTACGACGAGCTATCAGACGCGACGTGCGGATTCAGA GACGAGATTGCTAAGGGCGGGACGGGATCCGTGTACAAGGGTGTTCTTGAGGATGGCCGG AGCATCGCCGTGAAGCGGCTGGACGAGATGACGCAGGCCGACGAGGTGTTCCGGTCGGAG CTGAGCGTCATCGGGCGGATCAACCACATGAACCTCGTCAGGATATGGGGCTTCTGCTCG GAGCACCCGCACCGCCTCCTCGTCTCCGAGTTCGTCGAGAACGGCTCGCTCGACAAGGCC CTCTTCTGCGACGACGGCGAGAGCTCCGGTGTGGTGGTGTTACCATGGCGGTCGAGGTAC AAGATCGCCGTGGGCGTCGCGAAGGCGCTGGCGTACCTCCACCACGAGTGCCTGGAGTGG ATCGTGCACTGCGACGTGAAGCCGGAGAACATCCTGCTCGACGGCGACTTCGAGCCCAAG GTGACGGACTTCGGCCTCGTCAAGCTGCTGAGCCGCGACGCCGGCAGCCACATGGCGCTG TCGCGGGTGCAGGGGACCAGGGGCTACATTACGCCAGAGTGCTGGACAGTTGGTCGCTCG ATCAACGGCAAAGCCGACGTGTACAGCTTCGGCGTCGTGCTCCTCGAGCTGGTCAGGGGG CAGAGGGTGTGCGACTGGGTAGCGGCTGCGGCGACGGCCGACGGGGCATGGAATGTCCAG CGACTGGCCGTGTGGCTCAAGGAGAAGCTGAAGTGCGACGACGGCGAGCTGCCGGCGTGG CTGGAGGAGCTCGTGGACGCGCGGCTGCGCGGTGACTTCAACCATGTGCAGGCAGCCGGG TTGCTGGAGCTGGCGGTTTCGTGCGTGGACGGTGAGCCTAGCAGGCGGCCGAGCATGAGC ACGGTTGTTCATAAGCTCATCTCGTTGGACACGATAGAACATCATCTCTACGCCACTCAT GAGCTAGCAGCAAATGCAGCAGTCGTGAGTCTCGTTGGCGACGTTGGGGGCATCAATTGC GTCTGCCGTGTTGAAGACTTGAATTGTTTTTCTTGTTAG