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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0653000-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:33306468:33310169:1 gene:Os04g0653000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXTRA GLUME 2 description:Jasmonic acid (JA) signalling repressor, Regulation of spikelet development (Os04t0653000-01)
Sequence

ATGGATCTGTTGGAGAAGAAGAACATTAAGAAGGGGGGAGAAGTGGAGGAGGAGGTGGCG
CGCAAGGGAGAGGAGAGGAAGGAGGAAGAGGTGGTGGTGGAGGAGAAGAGCCATCAGCAG
CAGCAGCAGCAAGGGGAGGAGGAGCTCGTCGGCCTCTCGCTCGCCGGCGGCAGGCCCAAA
GTATTTCCAATGTCGAGCCCTCCACCTAATCCTTCGCAACTTACAATTTTCTATGGTGGA
TCAGTATGTGTTTATGACTCAGTGCCGCCAGAGAAGGCTCAAGCAATCATGCTTATTGCC
GCAGCAGCTGCTGCAGCGGCGTCTGCCACCAAAAGCAATGCTGCCATTGCTGTTAAGCCC
CCTGTGATGCCTGCAGCCAATGCTACCCAAGCAGCAGTCTCTCCTGTGCTCACAAGATCG
CTCTCATTGCAGAGCACTTCTGTAGCAACTGGACAACCTCAAGTTGCCGCTGACCCTAGC
TCAATTTGCAAGCTCCAGGCTGATCTCCCCATTGCCAGGAGGCACTCCCTTCAGCGCTTC
CTAGAGAAACGCCGTGACAGGTTGGTGAGCAAAGCTCCATATCCCACAAAATCCTCCGAG
GGCATGGAAGCATCAGGGATGGAAGTAACTGCTGAGGGCAAGGCCCAGTAA

Peptide Sequence

PEP ID

Os04t0653000-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:33306468:33310169:1 gene:Os04g0653000 transcript:Os04t0653000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXTRA GLUME 2 description:Jasmonic acid (JA) signalling repressor, Regulation of spikelet development (Os04t0653000-01)
Sequence

MDLLEKKNIKKGGEVEEEVARKGEERKEEEVVVEEKSHQQQQQQGEEELVGLSLAGGRPK
VFPMSSPPPNPSQLTIFYGGSVCVYDSVPPEKAQAIMLIAAAAAAAASATKSNAAIAVKP
PVMPAANATQAAVSPVLTRSLSLQSTSVATGQPQVAADPSSICKLQADLPIARRHSLQRF
LEKRRDRLVSKAPYPTKSSEGMEASGMEVTAEGKAQ

Transcript Sequence

Transcript ID

Os04t0653000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:33306468:33310169:1 gene:Os04g0653000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXTRA GLUME 2 description:Jasmonic acid (JA) signalling repressor, Regulation of spikelet development (Os04t0653000-01)
Sequence

ACTACCACTAGTACCCTTTCTTCCCCAAACCCCCTCCCGATTTCTCGTTTTTGCTCTCCA
ATTTCTCGCGAGAAGCCGAAGAGGAAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GGAGAGGAGGAGTTGGTTGAGATGGATCTGTTGGAGAAGAAGAACATTAAGAAGGGGGGA
GAAGTGGAGGAGGAGGTGGCGCGCAAGGGAGAGGAGAGGAAGGAGGAAGAGGTGGTGGTG
GAGGAGAAGAGCCATCAGCAGCAGCAGCAGCAAGGGGAGGAGGAGCTCGTCGGCCTCTCG
CTCGCCGGCGGCAGGCCCAAAGTATTTCCAATGTCGAGCCCTCCACCTAATCCTTCGCAA
CTTACAATTTTCTATGGTGGATCAGTATGTGTTTATGACTCAGTGCCGCCAGAGAAGGCT
CAAGCAATCATGCTTATTGCCGCAGCAGCTGCTGCAGCGGCGTCTGCCACCAAAAGCAAT
GCTGCCATTGCTGTTAAGCCCCCTGTGATGCCTGCAGCCAATGCTACCCAAGCAGCAGTC
TCTCCTGTGCTCACAAGATCGCTCTCATTGCAGAGCACTTCTGTAGCAACTGGACAACCT
CAAGTTGCCGCTGACCCTAGCTCAATTTGCAAGCTCCAGGCTGATCTCCCCATTGCCAGG
AGGCACTCCCTTCAGCGCTTCCTAGAGAAACGCCGTGACAGGTTGGTGAGCAAAGCTCCA
TATCCCACAAAATCCTCCGAGGGCATGGAAGCATCAGGGATGGAAGTAACTGCTGAGGGC
AAGGCCCAGTAACTGTCAACTTCGAATGGTGGAGGCTGACGTTTGGAGGGGGAAGGAAGG
AAAGGCGTCGCGTTCATTGTTTAGATGGTGTCGCACCCTAGAACCTTACTAATAATCGAA
CCTATGCCCTTATTATCGTTGTACTGTTCCTTATGTGCTAGTCTATTCTGTCATGAATTT
GTTTACTCGAACAGCAAACTGCTATGATAGTAGTATATCATTGTACATCATGCATATCAT
TGCCTGACAATGTTATCGTGTTCGTCTAGTAATGATATCATCCAGGTTAATTGTTACTAG
TAAATTTCAGTTTCAGCAGCTATGATAGTAGTATATCATTGTACATCATGCA