Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0650800-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:33168442:33169772:1 gene:Os04g0650800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphoglycerate dehydrogenase. (Os04t0650800-01);Similar to H0212B02.14 protein. (Os04t0650800-02)
Sequence

GCGCGTGGTGGTGTAATTGATGAAGATGCTCTAGTCAGGGCTCTTGATTCAGGAATAGTT
GCACAGGCTGCTCTTGATGTGTTCACTAAAGAGCCACCGGCACCAGACAGCAAATTAGTG
CTGCATGAGAATGTTACTGTAACACCACACCTTGGTGCCAGCACAGTTGAAGCACAGGAA
GGAGTGGCTATTGAAATAGCTGAAGCTGTTATTGGAGCTCTGAAAGGGGAACTTGCAGCT
TCAGCAGTCAACGCACCAATGGTTCCTGCTGAGGTGCTGTCAGAGCTTGCACCTTATGTT
GTGCTCGCAGAGAAGCTTGGGCGCCTGGCTGTGCAGCTAGTGGCTGGTGGCGGTGGTATC
AAGTCCGTGAAAGTGACCTATGCTTCTGCAAGGGCTCCTGATGATCTTGACACGAGACTT
CTTCGTGCAATGATCACCAAGGGGTTGATCGAACCAATCTCCAGTGTTTTCGTCAATCTG
GTCAATGCTGACTTCACTGCGAAACAGAGGGGAGTTCGTATCACTGAGGAGAGAATCTTG
TTGGATGGCTCACCCGAGACACCTATTGACTACATCCAAGTTCATATTGCCCATGTTGAG
TCCAAATTTCCCAGTGCAATATCGGAGAGTGGAGAGATCACTGTTGAGGGGAAGGTGAAG
GATGGCATCCCCCATCTGACAAAGGTTGGATCATTCCAGGTTGATGTGAGCTTGGAAGGA
AGCCTGATCCTTTGCAGGCAGGTCGATCAACCTGGTATGATCGGCGCAGTAGGAAGTGTC
CTTGGTGAGGAGAATGTTAATGTCAGTTTCATGAGTGTTGGAAGAATCGCTCCTCGCAAG
CATGCCGTCATGGCGATTGGTGTTGATGAGGAACCTAAAAAGAGCACACTGACAAAGATT
GGGGAGATTCCGGCGATTGAAGAATTCGTTTTCCTCAAGCTCTAG

Peptide Sequence

PEP ID

Os04t0650800-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:33168442:33169772:1 gene:Os04g0650800 transcript:Os04t0650800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphoglycerate dehydrogenase. (Os04t0650800-01);Similar to H0212B02.14 protein. (Os04t0650800-02)
Sequence

ARGGVIDEDALVRALDSGIVAQAALDVFTKEPPAPDSKLVLHENVTVTPHLGASTVEAQE
GVAIEIAEAVIGALKGELAASAVNAPMVPAEVLSELAPYVVLAEKLGRLAVQLVAGGGGI
KSVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGVRITEERIL
LDGSPETPIDYIQVHIAHVESKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLEG
SLILCRQVDQPGMIGAVGSVLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKI
GEIPAIEEFVFLKL

Transcript Sequence

Transcript ID

Os04t0650800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:33168442:33169772:1 gene:Os04g0650800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphoglycerate dehydrogenase. (Os04t0650800-01);Similar to H0212B02.14 protein. (Os04t0650800-02)
Sequence

TGCGCGTGGTGGTGTAATTGATGAAGATGCTCTAGTCAGGGCTCTTGATTCAGGAATAGT
TGCACAGGCTGCTCTTGATGTGTTCACTAAAGAGCCACCGGCACCAGACAGCAAATTAGT
GCTGCATGAGAATGTTACTGTAACACCACACCTTGGTGCCAGCACAGTTGAAGCACAGGA
AGGAGTGGCTATTGAAATAGCTGAAGCTGTTATTGGAGCTCTGAAAGGGGAACTTGCAGC
TTCAGCAGTCAACGCACCAATGGTTCCTGCTGAGGTGCTGTCAGAGCTTGCACCTTATGT
TGTGCTCGCAGAGAAGCTTGGGCGCCTGGCTGTGCAGCTAGTGGCTGGTGGCGGTGGTAT
CAAGTCCGTGAAAGTGACCTATGCTTCTGCAAGGGCTCCTGATGATCTTGACACGAGACT
TCTTCGTGCAATGATCACCAAGGGGTTGATCGAACCAATCTCCAGTGTTTTCGTCAATCT
GGTCAATGCTGACTTCACTGCGAAACAGAGGGGAGTTCGTATCACTGAGGAGAGAATCTT
GTTGGATGGCTCACCCGAGACACCTATTGACTACATCCAAGTTCATATTGCCCATGTTGA
GTCCAAATTTCCCAGTGCAATATCGGAGAGTGGAGAGATCACTGTTGAGGGGAAGGTGAA
GGATGGCATCCCCCATCTGACAAAGGTTGGATCATTCCAGGTTGATGTGAGCTTGGAAGG
AAGCCTGATCCTTTGCAGGCAGGTCGATCAACCTGGTATGATCGGCGCAGTAGGAAGTGT
CCTTGGTGAGGAGAATGTTAATGTCAGTTTCATGAGTGTTGGAAGAATCGCTCCTCGCAA
GCATGCCGTCATGGCGATTGGTGTTGATGAGGAACCTAAAAAGAGCACACTGACAAAGAT
TGGGGAGATTCCGGCGATTGAAGAATTCGTTTTCCTCAAGCTCTAGATTCATGCGTTGTA
TGTTTGAAGCTGCAAACATGGTGTGCAATTTTGATGTAGCTAGCTATTTAATCAGGATCT
AGAGGACTGATGGTTCTCGTTGGAAT