Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0648800-02
CDS Infomation	cds chromosome:IRGSP-1.0:4:33022876:33028358:1 gene:Os04g0648800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsHAL3-interacting protein 1, Heading date Associated Factor 1 description:C3HC4 RING domain-containing E3 ubiquitin ligase, Modulation of heading date by physically interacting with Hd1 (Os04t0648800-01);Similar to Zinc finger, C3HC4 type family protein. (Os04t0648800-02)
Sequence	ATGCAAGGACAGAAGAACTCTGTTGAGCAGCTTGCTGATGTGTTTGGATTTGACCATGCA TCCAGTTCAGGAAACCCTGTCATGGATCAACAAGGATATTGGAACAACATTCTTGGTTCA GTGGAGTCACATAACCTTCAAGGTTATCAGGTGAACCGTAGTGATGGAACTATTCCCTAT GGAAACGGTGTGCATCAAAATGGCACTTTTTTAGGTTTTTGGGAATCAGGCGAAGCAAGT GCAAGTGGCAGTTCACTACATTTTGGGGGCTCTAATGAGATCAAAGCTGAGCAACGTAAT ATCGGTGGTGGCCTAAGGATTGGTGAAAGGCGCTTGGTAGCTGAGCGCAACCTTTCTTTG GATAATGTTGATATAGGCCTTAACATCAATGGTAATGATCTATCTGGTGAAAATTCAAAT GTGAATGGTGCTTCACAAGGCTCTGAACTACATGGTGGCTGCTCTCATACTGGTTCAAAT GGTCAAGCCTCTGAGCTGAGATTACATCCATACAGGACATTCATATTAGGTGCAGATCAA CCTGAGCCTTTTAATTCTTTGAATGGCAGTGAAAATCCTTTAGGTGATTTTTCCTTGATG CCAGAAGGCATTGATCAGCGACCAGGCAGTTCCCTGGATGGCCGCCGGCTGGCATGCAAG AGGAAAAATATAGAAGGAGTTAATGGGCAGTGCTCGGCAGGTGCTAGCACTAGTTTTTCC CACAGGAACGATAGTATTTTCCATAACATTGCTTCTTCGAGTCATAATCCCTCTCCTAGT ACAAATTTACCCTCTCCTAATTGTCTGTTGGTTCCAAGCACTCTTGATGAACAACTCCCG CGTTATGGAGCTACTACAGCTGGATTGTCATCTAGTAGCTATGATCCTAGTGGAGGCAAT AACAATTCAGGAGGCTCACAAAGAAGTTTTCGGCCAAGAACTAGCCTGGCTCAACATATT GGCCCCTATGGTGTGTGGCCATCTTCAAGTACTATCAGACATTCCAGTGGTCAGTAG

Peptide Sequence

PEP ID	Os04t0648800-02
PEP Infomation	pep chromosome:IRGSP-1.0:4:33022876:33028358:1 gene:Os04g0648800 transcript:Os04t0648800-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsHAL3-interacting protein 1, Heading date Associated Factor 1 description:C3HC4 RING domain-containing E3 ubiquitin ligase, Modulation of heading date by physically interacting with Hd1 (Os04t0648800-01);Similar to Zinc finger, C3HC4 type family protein. (Os04t0648800-02)
Sequence	MQGQKNSVEQLADVFGFDHASSSGNPVMDQQGYWNNILGSVESHNLQGYQVNRSDGTIPY GNGVHQNGTFLGFWESGEASASGSSLHFGGSNEIKAEQRNIGGGLRIGERRLVAERNLSL DNVDIGLNINGNDLSGENSNVNGASQGSELHGGCSHTGSNGQASELRLHPYRTFILGADQ PEPFNSLNGSENPLGDFSLMPEGIDQRPGSSLDGRRLACKRKNIEGVNGQCSAGASTSFS HRNDSIFHNIASSSHNPSPSTNLPSPNCLLVPSTLDEQLPRYGATTAGLSSSSYDPSGGN NNSGGSQRSFRPRTSLAQHIGPYGVWPSSSTIRHSSGQ

Transcript Sequence

Transcript ID	Os04t0648800-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:33022876:33028358:1 gene:Os04g0648800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsHAL3-interacting protein 1, Heading date Associated Factor 1 description:C3HC4 RING domain-containing E3 ubiquitin ligase, Modulation of heading date by physically interacting with Hd1 (Os04t0648800-01);Similar to Zinc finger, C3HC4 type family protein. (Os04t0648800-02)
Sequence	GTCTTTCTCCTTCTCCTCCTCCTTCCTCTCGCTCTCTCCTCCTTGACAAAATTTCCTCCA CCCATTCCCTTCTCCACCCACCCTGCCGATCTCTCTGAATTCGGTCGCCTCCTCCGCACC ATCTTTCTCTCCTCCTCTCTTCTAGCAATCGGTCGTTTCCTCCGGTTGTTGTGCTGATTC TTCGTTCTTTCTCTCCCTCTCTCTCTCTTTCTTTCTTCCTCTCTCTGCCTTGGAGAGGAT CAAGAAACGAAGGGAGGGAGGAGAGGAGAGGAGAAGGGAAATCGAGAAAAGTCTGTTCTT TGGTTTGGCTCGTGTGGTTCTTGAGAGCTGCTGTTTGGAAAATCTCTGCACCTGTTGCTG ACCACTTGCTTCAATTGTTGAAAGAGATGAACAGCACCTGAGATGCTATTGCCAGACATC AATTGATAAAGAGCACATCTTCAGTAATGCAAGGACAGAAGAACTCTGTTGAGCAGCTTG CTGATGTGTTTGGATTTGACCATGCATCCAGTTCAGGAAACCCTGTCATGGATCAACAAG GATATTGGAACAACATTCTTGGTTCAGTGGAGTCACATAACCTTCAAGGTTATCAGGTGA ACCGTAGTGATGGAACTATTCCCTATGGAAACGGTGTGCATCAAAATGGCACTTTTTTAG GTTTTTGGGAATCAGGCGAAGCAAGTGCAAGTGGCAGTTCACTACATTTTGGGGGCTCTA ATGAGATCAAAGCTGAGCAACGTAATATCGGTGGTGGCCTAAGGATTGGTGAAAGGCGCT TGGTAGCTGAGCGCAACCTTTCTTTGGATAATGTTGATATAGGCCTTAACATCAATGGTA ATGATCTATCTGGTGAAAATTCAAATGTGAATGGTGCTTCACAAGGCTCTGAACTACATG GTGGCTGCTCTCATACTGGTTCAAATGGTCAAGCCTCTGAGCTGAGATTACATCCATACA GGACATTCATATTAGGTGCAGATCAACCTGAGCCTTTTAATTCTTTGAATGGCAGTGAAA ATCCTTTAGGTGATTTTTCCTTGATGCCAGAAGGCATTGATCAGCGACCAGGCAGTTCCC TGGATGGCCGCCGGCTGGCATGCAAGAGGAAAAATATAGAAGGAGTTAATGGGCAGTGCT CGGCAGGTGCTAGCACTAGTTTTTCCCACAGGAACGATAGTATTTTCCATAACATTGCTT CTTCGAGTCATAATCCCTCTCCTAGTACAAATTTACCCTCTCCTAATTGTCTGTTGGTTC CAAGCACTCTTGATGAACAACTCCCGCGTTATGGAGCTACTACAGCTGGATTGTCATCTA GTAGCTATGATCCTAGTGGAGGCAATAACAATTCAGGAGGCTCACAAAGAAGTTTTCGGC CAAGAACTAGCCTGGCTCAACATATTGGCCCCTATGGTGTGTGGCCATCTTCAAGTACTA TCAGACATTCCAGTGGTCAGTAGCCTGAACTTTCAATACCAGCATCCAATGAATGTCGTT CCTGGCATTCCACAGATGTCACACCGGTTCACTGGTCCAGGGGCCTCATCATCAAGAACA GGCAATTTGGAGAACAGAATTATTGGTAGTGAGGAATTTAGCGCGAGGAATGTAGTGGCT ACCAGCTTCCCTGATGCAGTTCCTCCGGCCGCACTAGACATGAGGCATTTGATACCAGAA CCATCTAGTTGGAATGTAGATGGCAGAGCTACTACCATTCCAGGAAATGTTCCTTCTTCA TCGAGAGCTAATACCAATTCGATGGTTAATCCACCAGCAGGCTCTCCATTTATTGCCCAT CAAAACTTGCATAGACGTAATCCTCGTAATTTGTCAGAGGAGATAAGTCGTTTATCTGGA GCTCTTCGTGGCCATCAGCACCCACGCCTAAGGTCCGGTTTTCTGTTAGAACGACAAGGT GATGGTGTTTGGGGTGTTCCGTTGTCAACTAGGAGCAGGGAAGGAAGAAGATTAATTGAG ATCCGGAACGCGCTTGAAATGATTCACAGAGGGGAAAATGTAAGATTTGAGTCCATTTTC TATGGTGGAGTCGACATTCATGACAGACACAGGGATATGCGCCTTGACATAGACAACATG TCTTATGAGGAGCTATTGGCACTGGAAGAAAGAATAGGCAATGTTAGCACTGGCCTCAGT GAGGAAGAAGTGACAAAGCTCCTAAAGCAAAGGAAATTCTCATCATGGAGGTTGGAAGCA TCTGTGGAAGAAGAGCCATGCTGTATCTGCCAGGAAGAGTATGTTGATGGGGATGATCTC GGGACACTGGACTGTGGACATGACTTCCATGTTGGATGCGTCAGGCAATGGCTGGTTGTG AAGAACACCTGTCCCATATGCAAAAATACTGCTCTGAAGTCTTAGAAAAAGCACAGGGCA GTAAACACTGTGTGCTTGTTCGATCGCAAGATCGTTTAGTGATTCATATTACCGTGCCGT TTTTTGATTAGAAATTTTTTTTGCCATTGACCTACAAATTTGATTAAAAAAAAAGGTAAA AGAACTGGTCCCTGCAAACTGCCCCCTCCTGCAGTAAATAATCCCTGGAATCTGTCGCTC TGCATTCAACTGAATATTTATGGCTGGTATATTGGATGATGGCTCAATATTTTTTTC