Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0648500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:32994714:32999780:-1 gene:Os04g0648500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0648500-01)
Sequence

ATGTTCAGCCTTCTGATCCAGTCCGTCGACTTCACCGACGACGCGGCCGCGGCCGCGGCC
ACCGCCGTCGCCGCCGGCGAAACCAGCGGCACCTCTCACCCCCTCTCCCCGCGCTCCGGC
GACCCTCTCCCCACCACCACCTCCGCCTCCGTAACGGCGCCTCTCGAGCTGCCCGGCGCG
ACCTCCGCCTCGCCCGCCCGAAACCCTAAGATCAACTACACCCGCGGCATCCTACACCTC
TACCGCTCCTCCTCCTCCTCCTCGTCGACCGCCTCCTACGCTTCCGCCGTCGCCGCCACT
CCATCCTCCTCCTCCTCCGGACCCGCCGCCCCGCAGCTCGCCTCCGACTGCCTACTCCCG
CCATGGCGCGGCACACGGCTCCTGGTGCTCGCCGTCCCAACCCACGTCTCACCAGACGAC
TTCGTCCGCTTCTGCGGCCCTTACATCGAGCACGCCTCCGATATCCATGTCGTCAGGGAT
GATGGGGTGGAGGACCGGTATAGCGTGCTCGTGGAGTTTGAGGATCAGAAGAGTGCCGAT
GGGTTCTACTTGGACCTCAACGGTTGGAGGTTCTCGTCATCCGAGGTAGAGGTTTGCCAT
GTTCTGTTTATAGTTGCTGTCCAATATACACCATCAACCAAGCCTGCGGTGACTCCACCA
GTTGGATCCACTGAGCTCCCAACATGTCCTGTCTGTATTGAAAGATTGGATCAAGACATC
AGCGGAATTATGGCAACGACTTGTGATCATTCGTTCCAGTGTTCATGTGTTTCAATGTGG
GTCAATTCATCTTGTCCGGTTTGCCAGTTTTGTCAGAAGCAGTCTAAGAATCCTACATGT
TCTGTTTGTCAAACCTCTGGAAACCTATGGATCTGTATAATATGTGGTTTTGTTGGATGT
GGGAGGTATGAAGAAGGCCATGCAATTAGGCACTGGAAAGAAACTCAGCACTGCTATTCA
CTTGATTTGGAAACTCAACGTGTTTGGGATTATGTTGGTGACAGTTACGTCCACCGACTT
AATCACTCCAAAAGTGATGTGAAGCATTCCAAGTTCAAGTCAAAGTGTAAATATTCTGGT
GACAAATGTGCAAACTGCTCCTGCAATGATGAGGAAGATATCGGTGGTGCTATTTTCAGC
AGCAAAGCAGAAACAATTGTGGATGAATACAACCGTCTTCTTGCTAGCCAACTTGAAACT
CAGAGAGAGTATTATGAGGCTCGGCTGTCAGAAGCTAAGAAAGAAAAGGAACAACACATT
TCTGATGCAGTGGATAAAGCTGTAAATGATAAGAGTAAAGAAATCCAACAAAAGATTGAG
AATGCAATGTTGGAGAAAAAGAAACTTGCAGATATGAATGAAAAACTCACGAAGAACCAG
GATATATGGCGTCGAACACTAAAAGAAATTGAGGAAAGGGAGAGGGCTCAACTGAAGTTG
AAAGATGATACAATTCGTGATCTAGAAGAACAGATAAAAGATTTCAAATTTTCCATCAAG
TTACAGAAATCGATCGAGAAGAATAAAAATGCTGATGATCTCAAAGGAGGTTTGCTGGTG
CCACTCCCAATGGTGCCAGATTCTGGAACCAAAGGTAAAAGATCGTCAAGAACAAGCAAG
AGGAGGAACCAGTAG

Peptide Sequence

PEP ID

Os04t0648500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:32994714:32999780:-1 gene:Os04g0648500 transcript:Os04t0648500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0648500-01)
Sequence

MFSLLIQSVDFTDDAAAAAATAVAAGETSGTSHPLSPRSGDPLPTTTSASVTAPLELPGA
TSASPARNPKINYTRGILHLYRSSSSSSSTASYASAVAATPSSSSSGPAAPQLASDCLLP
PWRGTRLLVLAVPTHVSPDDFVRFCGPYIEHASDIHVVRDDGVEDRYSVLVEFEDQKSAD
GFYLDLNGWRFSSSEVEVCHVLFIVAVQYTPSTKPAVTPPVGSTELPTCPVCIERLDQDI
SGIMATTCDHSFQCSCVSMWVNSSCPVCQFCQKQSKNPTCSVCQTSGNLWICIICGFVGC
GRYEEGHAIRHWKETQHCYSLDLETQRVWDYVGDSYVHRLNHSKSDVKHSKFKSKCKYSG
DKCANCSCNDEEDIGGAIFSSKAETIVDEYNRLLASQLETQREYYEARLSEAKKEKEQHI
SDAVDKAVNDKSKEIQQKIENAMLEKKKLADMNEKLTKNQDIWRRTLKEIEERERAQLKL
KDDTIRDLEEQIKDFKFSIKLQKSIEKNKNADDLKGGLLVPLPMVPDSGTKGKRSSRTSK
RRNQ

Transcript Sequence

Transcript ID

Os04t0648500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:32994714:32999780:-1 gene:Os04g0648500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0648500-01)
Sequence

AACGGCCCAAAAAGCCCAGGAAGCAAACATGTTCAGCCTTCTGATCCAGTCCGTCGACTT
CACCGACGACGCGGCCGCGGCCGCGGCCACCGCCGTCGCCGCCGGCGAAACCAGCGGCAC
CTCTCACCCCCTCTCCCCGCGCTCCGGCGACCCTCTCCCCACCACCACCTCCGCCTCCGT
AACGGCGCCTCTCGAGCTGCCCGGCGCGACCTCCGCCTCGCCCGCCCGAAACCCTAAGAT
CAACTACACCCGCGGCATCCTACACCTCTACCGCTCCTCCTCCTCCTCCTCGTCGACCGC
CTCCTACGCTTCCGCCGTCGCCGCCACTCCATCCTCCTCCTCCTCCGGACCCGCCGCCCC
GCAGCTCGCCTCCGACTGCCTACTCCCGCCATGGCGCGGCACACGGCTCCTGGTGCTCGC
CGTCCCAACCCACGTCTCACCAGACGACTTCGTCCGCTTCTGCGGCCCTTACATCGAGCA
CGCCTCCGATATCCATGTCGTCAGGGATGATGGGGTGGAGGACCGGTATAGCGTGCTCGT
GGAGTTTGAGGATCAGAAGAGTGCCGATGGGTTCTACTTGGACCTCAACGGTTGGAGGTT
CTCGTCATCCGAGGTAGAGGTTTGCCATGTTCTGTTTATAGTTGCTGTCCAATATACACC
ATCAACCAAGCCTGCGGTGACTCCACCAGTTGGATCCACTGAGCTCCCAACATGTCCTGT
CTGTATTGAAAGATTGGATCAAGACATCAGCGGAATTATGGCAACGACTTGTGATCATTC
GTTCCAGTGTTCATGTGTTTCAATGTGGGTCAATTCATCTTGTCCGGTTTGCCAGTTTTG
TCAGAAGCAGTCTAAGAATCCTACATGTTCTGTTTGTCAAACCTCTGGAAACCTATGGAT
CTGTATAATATGTGGTTTTGTTGGATGTGGGAGGTATGAAGAAGGCCATGCAATTAGGCA
CTGGAAAGAAACTCAGCACTGCTATTCACTTGATTTGGAAACTCAACGTGTTTGGGATTA
TGTTGGTGACAGTTACGTCCACCGACTTAATCACTCCAAAAGTGATGTGAAGCATTCCAA
GTTCAAGTCAAAGTGTAAATATTCTGGTGACAAATGTGCAAACTGCTCCTGCAATGATGA
GGAAGATATCGGTGGTGCTATTTTCAGCAGCAAAGCAGAAACAATTGTGGATGAATACAA
CCGTCTTCTTGCTAGCCAACTTGAAACTCAGAGAGAGTATTATGAGGCTCGGCTGTCAGA
AGCTAAGAAAGAAAAGGAACAACACATTTCTGATGCAGTGGATAAAGCTGTAAATGATAA
GAGTAAAGAAATCCAACAAAAGATTGAGAATGCAATGTTGGAGAAAAAGAAACTTGCAGA
TATGAATGAAAAACTCACGAAGAACCAGGATATATGGCGTCGAACACTAAAAGAAATTGA
GGAAAGGGAGAGGGCTCAACTGAAGTTGAAAGATGATACAATTCGTGATCTAGAAGAACA
GATAAAAGATTTCAAATTTTCCATCAAGTTACAGAAATCGATCGAGAAGAATAAAAATGC
TGATGATCTCAAAGGAGGTTTGCTGGTGCCACTCCCAATGGTGCCAGATTCTGGAACCAA
AGGTAAAAGATCGTCAAGAACAAGCAAGAGGAGGAACCAGTAGCTGCATCTGTTGTACAT
GTAACAAGCAATTGCTTGGCTAATCTGTGCCAACCAGGATAATATGATACATTCTGAAAA
AAAGAGAGAGTGCAATATTATTCTACTACAGATAGCTGCCTTTTATGGAACAGAAAATTG
AACCAAAGGATAGCATAGTTTACAATTTTACATTACATACAGGG