Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0643700-03
CDS Infomation

cds chromosome:IRGSP-1.0:4:32759309:32760801:1 gene:Os04g0643700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0643700-01);Pentatricopeptide repeat domain containing protein. (Os04t0643700-02);Similar to H0306F03.10 protein. (Os04t0643700-03)
Sequence

CTCAACCGCCTCGCCGCCGCCAATCTCATCGACGACGCCATCCGCGCGTTCGATTCCACT
GCCGGTTCCATCGGCCTGCGGGATGAGGCCTCCTTCCACGCCCTCGTCGACGCGCTCTGC
GACCACCGCCGCGTTGACGAGGCCCACCACCTATGCTTCGGCAAGGACCCGCCGCCATTC
CCGCCGGTGACGAAGACCTACAACTTGCTCCTCCGGGGGTGGGCTAAGACCCGCGCCTGG
GCGCGCCTCCGCCAACTCTGGTTCGACATGGATAGCCGCGGTGTTGCCAAGGACCTCCAC
TCCTACTCCATCTACATGGATGCCCTTGCGAAGTCAGGCAAGCCGTGGAAGGCCTTCAAG
GTGTTCAAGGAGATGAAGCAGAAGGGCATGGCGATCGATGTTGTTGCGTATAATACTGCA
ATCCATTCAGTTGGGCTTGCACAGGGAGTCGATTTCGCTATTCGGTTGTATAGGCAAATG
GTTGATGCTGGTTGCAAGCCAAATGCTTCCACTTTTAATACGATTGTTAAATTATTATGC
AAGGAAGGGAGGTTCAAGGAAGGGTATGCATTTGTTCAACAGATGCACAAGTTTGGGATT
GAGCCCAATGTGCTCACTTACCATTGCTTCTTCCAATATTTGAGCCGGCCTCAGGAGGTC
CTTGGACTGTTTGAGAAAATGCTCGAGAGGGGTTGTCGGCCAAGGATGGACACATATGTC
ATGCTCATCAAGAGGTTTGGGCGGTGGGGATTCCTTAGGCCAGTGTTCATTGTGTGGAAG
GCAATGGAAAAGCAAGGACTCAGCCCAGATGCATTTGCTTACAATTCCCTTATTGATGCA
TTGCTGCAGAAGGGAATGGTGGACTTAGCTAGAAAGTATGATGAGGAGATGCTTTCAAAG
GGATTATCACCCAAACCAAGGAAGGAACTGGGGACTAAGATTCCGGGAGCAGAGTCTGAC
AGTGATAATGCATTGAGTGGCGTACTTTAA

Peptide Sequence

PEP ID

Os04t0643700-03
PEP Infomation

pep chromosome:IRGSP-1.0:4:32759309:32760801:1 gene:Os04g0643700 transcript:Os04t0643700-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0643700-01);Pentatricopeptide repeat domain containing protein. (Os04t0643700-02);Similar to H0306F03.10 protein. (Os04t0643700-03)
Sequence

LNRLAAANLIDDAIRAFDSTAGSIGLRDEASFHALVDALCDHRRVDEAHHLCFGKDPPPF
PPVTKTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFK
VFKEMKQKGMAIDVVAYNTAIHSVGLAQGVDFAIRLYRQMVDAGCKPNASTFNTIVKLLC
KEGRFKEGYAFVQQMHKFGIEPNVLTYHCFFQYLSRPQEVLGLFEKMLERGCRPRMDTYV
MLIKRFGRWGFLRPVFIVWKAMEKQGLSPDAFAYNSLIDALLQKGMVDLARKYDEEMLSK
GLSPKPRKELGTKIPGAESDSDNALSGVL

Transcript Sequence

Transcript ID

Os04t0643700-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:32759309:32760801:1 gene:Os04g0643700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0643700-01);Pentatricopeptide repeat domain containing protein. (Os04t0643700-02);Similar to H0306F03.10 protein. (Os04t0643700-03)
Sequence

CTCAACCGCCTCGCCGCCGCCAATCTCATCGACGACGCCATCCGCGCGTTCGATTCCACT
GCCGGTTCCATCGGCCTGCGGGATGAGGCCTCCTTCCACGCCCTCGTCGACGCGCTCTGC
GACCACCGCCGCGTTGACGAGGCCCACCACCTATGCTTCGGCAAGGACCCGCCGCCATTC
CCGCCGGTGACGAAGACCTACAACTTGCTCCTCCGGGGGTGGGCTAAGACCCGCGCCTGG
GCGCGCCTCCGCCAACTCTGGTTCGACATGGATAGCCGCGGTGTTGCCAAGGACCTCCAC
TCCTACTCCATCTACATGGATGCCCTTGCGAAGTCAGGCAAGCCGTGGAAGGCCTTCAAG
GTGTTCAAGGAGATGAAGCAGAAGGGCATGGCGATCGATGTTGTTGCGTATAATACTGCA
ATCCATTCAGTTGGGCTTGCACAGGGAGTCGATTTCGCTATTCGGTTGTATAGGCAAATG
GTTGATGCTGGTTGCAAGCCAAATGCTTCCACTTTTAATACGATTGTTAAATTATTATGC
AAGGAAGGGAGGTTCAAGGAAGGGTATGCATTTGTTCAACAGATGCACAAGTTTGGGATT
GAGCCCAATGTGCTCACTTACCATTGCTTCTTCCAATATTTGAGCCGGCCTCAGGAGGTC
CTTGGACTGTTTGAGAAAATGCTCGAGAGGGGTTGTCGGCCAAGGATGGACACATATGTC
ATGCTCATCAAGAGGTTTGGGCGGTGGGGATTCCTTAGGCCAGTGTTCATTGTGTGGAAG
GCAATGGAAAAGCAAGGACTCAGCCCAGATGCATTTGCTTACAATTCCCTTATTGATGCA
TTGCTGCAGAAGGGAATGGTGGACTTAGCTAGAAAGTATGATGAGGAGATGCTTTCAAAG
GGATTATCACCCAAACCAAGGAAGGAACTGGGGACTAAGATTCCGGGAGCAGAGTCTGAC
AGTGATAATGCATTGAGTGGCGTACTTTAATAGTTTGATTACTGAGAGCAGTGGTATTAA
CATGTTCTGGTTATCACTAAGATTATGCTGATCTTCTTTTAAAGATAGGCTTCTTTGTGT
TGAAAGTCTGAAGGAGATCTGATTTGTGGTGCACATGAGTTTAACATTGAAGTAAAAGAT
TGCATTTCCTCTCAACTATTGCACAGCTGCCCACAGGAATTATGATGATATCCCTCAATA
ATGGAATGTTTGCCCAAGCTGAGGACACCTGGGAAGTGGGCACTAGTGTGAATTCGGAGA
GCTATTGCTCCTCACAGATCTATATGATTACCGTGGTCAATTGAAATTACGACATGCTGA
TATTTCTCAAAGCAGACAACCTTGTCTCAGGGGGTCATAAATAATAAATTTTGTGTTGAA
CTGAAATG