Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0641200-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:32625806:32629133:1 gene:Os04g0641200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 16 description:Similar to Pectin methylesterase-like protein. (Os04t0641200-01)
Sequence	ATGCCCAACAACGCAGCCATCGGAAGCATCGTCGCCGCCGTCGGCGTCGTCGCCGTGGTC TGCGCGATCGCCGCGGTCACGAGCTCCAAGAAGGATCGCAATGGCGAGCTCACCGCCAAC GTCAGGCTCTCCACCGTGTGCTCCGTGACGCGGTACCCTGGCAGGTGCGAGCAGAGCCTC GGCCCCGTCGTGAACGACACCATCGACCCCGAGAGCGTCCTCCGCGCCGCGCTGCAGGTG GCGCTCGAAGAGGTCACCAGCGCGTTCAACCGCTCCATGGACGTCGGCAAGGACGACGAC GCCAAGATCACCAAGAGCGCCATCGAGATGTGCAAGAAGCTCCTCGACGACGCCATCGAA GATCTCAGGGGCATGGCGAGCCTCAAACCCGAGGAGGTCACGAAGCACGTCAACGACCTC CGGTGTTGGCTGTCCAGCGTCATGACGTACATCTACACCTGCGCCGACGGCTTCGACAAG CCGGAGCTGAAGGAGGCCATGGACAAGCTCCTGCAGAACTCCACCGAGCTGAGCAGCAAC GCGCTCGCCATCATCACCAGCCTCGGCGAACTCATGCCGGCTGCCAAGTCGAACGGATCC ACCGGCGCGCACCGCCGGCTTCTCGGGTTGCAGGGCAGTGAGGCGGCAGAGGGGGTAAGC TTGCGCGAGCTTCTTGCCGTCCACGACAAGGTACAGGAGCTCACAGATGTGAAAGACGTC AGCCGCCATCTCTTGTCCGAGACGCTGGACGCGATCACCGAGATGTCCCACGACGCAGGC CGCCGCCTTCTTGGCGTCACGCTCAGCGAAGCCACAGACGACAGCGACGACAGTGGCCTC CCCGGCCGCCGGCTGCTGAGTATGTCTTTCCACGACGCCGACCACGGGGTGCACGGCGGC GATCATCGGCGGCTGAGTATGTCTTTCCACGATGCTGACCACGAGGTGCACGGCGGCGAG CATCGGCGTTTGAGTATGTCTTTGAACGACGCCGACCCCGAGGAGCAAGGCGGCGAGCAT CGGCGTCTGAGTATGTCTTTAAACGACGCCGACCCCGAGGTGCAAGGCGGCGAGCATCGG CGGCTGAGTATATCTTTGAACGACGCCGACCCCGAGGTGCACGGCGACGAGCATCGGCGG CTGAGTATGTCTTTGAACGACGCCGACACCGAGGTGCACGGCGGCGAGCATCGGCAGCTG AGCATGTCTTTGAACGACGCCGACACCGAGGTGCACGGCGGCGAGCATCGGCGGCTGAGT ATGTCTTTGAACGAGGCCGGCACCGAACAGCCCAGCGGCGAGCATCGGCAGCTGAGTGTG TCTTCCAGTGACGCTGGCTCCTCCACGGACTCCACCTCCGACTCCGATACGCCCGGCGGC GACCCCAAGGAGCCCGCGGCCGTTGATGACTCCAAAAACGCCGTCCCCGGGGAGCCCGCC GCCGCCGCCGCCGCCGAGCATCGGCAGCTGGGCACGCTTTTCAACGCTATCCACAACATG ACGAGCAAGGCCGACACCGTCAAGCGCCGGCTGCTGAGCATGCCACAAGACGGCTCCGAC GCCACCGAGCACGAGGGCGGCGGGCGCGCGCTTCTGTCCATCCAGCTCCAGAGCATCGCC GACATGTCCGCCGAGATGAACCGCCACCTCCTCGCGGCGGAGCTCCCCGACGAGCTCGCC GGCAAGCGGCAGCTCCTGTCCACGACGCTCAGGGAGCTCAACGAAGCAACCACGGCGGCG AAGGGCCAGCTCGACAAGATCGAGAACGGCACGGTGCACTCCGACGCCATCCCGGAGCGA ATTCTCGGAGATGAGTACAGGGCCACCCCCCACCACCGGCTGCTCACCACGGACGTCGTC GGCACGATCGAAGACATCGAACACGAGCGCCACAACCAGCCCAAGCCCGGCGAGTTCCCG TCGTGGGTGTCCGCCCACCAGCGGCGTCTCCTGCAGGCCGGCACGCAGAAGCCCGACAAG GTGGTCGCCAAGGACGGGAGCGGCGACTTCAAGACGATCACCGAGGCCGTCAACGCCGTG CCCAAGAACTCCCCGACCCGCTTCGTCATCTACGTGAAGGCCGGCGAGTACAACGAGTAC GTCACCATCCCCAGCTCGTTGCCCAACATCTTCATGTACGGCGACGGCCCGACCAAGACG CGCGTCCTCGGCAACAAGAGCAACAAGGACGGCGTCGCCACCATGGCCACCCGCACCTTC TCGGCGGAGGGGAATGGATTCGTGTGCAAGTCGATGGGGTTCGTGAACACGGCGGGGCCG GAGGGGCACCAGGCGGTGGCGCTGCACGTGCAGGGGGACATGTCGGTGTTCTTCAACTGC AAGTTCGAGGGGTACCAGGACACGCTGTACGTGCACGCCAACAGGCAGTTCTTCCGGAAC TGCGAGGTGACGGGGACCATCGACTACATCTTCGGCAACTCGGCGGCGGTGTTCCAGAGC TGCCTCATGACGGTGCGGAAGCCGATGGACAACCAGGCGAACATGGTGACGGCGCACGGG CGCACCGACCCCAACATGCCCACCGGCATCGTGCTCCAGGATTGCCGCATCGTGCCGGAG CAGGCGCTCTTCCCCGTCCGCCTCCAGATCGCCAGCTACCTCGGCCGGCCATGGAAGGAG TACGCGAGGACGGTGGTGATGGAGAGCGTCATCGGCGACTTCATCAAGCCGGAGGGGTGG TCGGAGTGGATGGGCGACGTGGGGCTCAAGACGCTCTACTACGCCGAGTACGCCAACACC GGGCCAGGCGCCGGCACAAGCAAGAGGGTGACGTGGCCGGGATACCGCGTCATCGGCCAG GCCGAGGCCACGCAGTTCACCGCCGGCGTCTTCATCGACGGCTTGACGTGGCTCAAGAAC ACCGCCACGCCCAACGTCATGGGCTTCGTCAAATGA

Peptide Sequence

PEP ID	Os04t0641200-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:32625806:32629133:1 gene:Os04g0641200 transcript:Os04t0641200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 16 description:Similar to Pectin methylesterase-like protein. (Os04t0641200-01)
Sequence	MPNNAAIGSIVAAVGVVAVVCAIAAVTSSKKDRNGELTANVRLSTVCSVTRYPGRCEQSL GPVVNDTIDPESVLRAALQVALEEVTSAFNRSMDVGKDDDAKITKSAIEMCKKLLDDAIE DLRGMASLKPEEVTKHVNDLRCWLSSVMTYIYTCADGFDKPELKEAMDKLLQNSTELSSN ALAIITSLGELMPAAKSNGSTGAHRRLLGLQGSEAAEGVSLRELLAVHDKVQELTDVKDV SRHLLSETLDAITEMSHDAGRRLLGVTLSEATDDSDDSGLPGRRLLSMSFHDADHGVHGG DHRRLSMSFHDADHEVHGGEHRRLSMSLNDADPEEQGGEHRRLSMSLNDADPEVQGGEHR RLSISLNDADPEVHGDEHRRLSMSLNDADTEVHGGEHRQLSMSLNDADTEVHGGEHRRLS MSLNEAGTEQPSGEHRQLSVSSSDAGSSTDSTSDSDTPGGDPKEPAAVDDSKNAVPGEPA AAAAAEHRQLGTLFNAIHNMTSKADTVKRRLLSMPQDGSDATEHEGGGRALLSIQLQSIA DMSAEMNRHLLAAELPDELAGKRQLLSTTLRELNEATTAAKGQLDKIENGTVHSDAIPER ILGDEYRATPHHRLLTTDVVGTIEDIEHERHNQPKPGEFPSWVSAHQRRLLQAGTQKPDK VVAKDGSGDFKTITEAVNAVPKNSPTRFVIYVKAGEYNEYVTIPSSLPNIFMYGDGPTKT RVLGNKSNKDGVATMATRTFSAEGNGFVCKSMGFVNTAGPEGHQAVALHVQGDMSVFFNC KFEGYQDTLYVHANRQFFRNCEVTGTIDYIFGNSAAVFQSCLMTVRKPMDNQANMVTAHG RTDPNMPTGIVLQDCRIVPEQALFPVRLQIASYLGRPWKEYARTVVMESVIGDFIKPEGW SEWMGDVGLKTLYYAEYANTGPGAGTSKRVTWPGYRVIGQAEATQFTAGVFIDGLTWLKN TATPNVMGFVK

Transcript Sequence

Transcript ID	Os04t0641200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:32625806:32629133:1 gene:Os04g0641200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 16 description:Similar to Pectin methylesterase-like protein. (Os04t0641200-01)
Sequence	CTCCGCGTGGCATTCCGTCCCCCCCGCGTGACGCCAACAATGCCCAACAACGCAGCCATC GGAAGCATCGTCGCCGCCGTCGGCGTCGTCGCCGTGGTCTGCGCGATCGCCGCGGTCACG AGCTCCAAGAAGGATCGCAATGGCGAGCTCACCGCCAACGTCAGGCTCTCCACCGTGTGC TCCGTGACGCGGTACCCTGGCAGGTGCGAGCAGAGCCTCGGCCCCGTCGTGAACGACACC ATCGACCCCGAGAGCGTCCTCCGCGCCGCGCTGCAGGTGGCGCTCGAAGAGGTCACCAGC GCGTTCAACCGCTCCATGGACGTCGGCAAGGACGACGACGCCAAGATCACCAAGAGCGCC ATCGAGATGTGCAAGAAGCTCCTCGACGACGCCATCGAAGATCTCAGGGGCATGGCGAGC CTCAAACCCGAGGAGGTCACGAAGCACGTCAACGACCTCCGGTGTTGGCTGTCCAGCGTC ATGACGTACATCTACACCTGCGCCGACGGCTTCGACAAGCCGGAGCTGAAGGAGGCCATG GACAAGCTCCTGCAGAACTCCACCGAGCTGAGCAGCAACGCGCTCGCCATCATCACCAGC CTCGGCGAACTCATGCCGGCTGCCAAGTCGAACGGATCCACCGGCGCGCACCGCCGGCTT CTCGGGTTGCAGGGCAGTGAGGCGGCAGAGGGGGTAAGCTTGCGCGAGCTTCTTGCCGTC CACGACAAGGTACAGGAGCTCACAGATGTGAAAGACGTCAGCCGCCATCTCTTGTCCGAG ACGCTGGACGCGATCACCGAGATGTCCCACGACGCAGGCCGCCGCCTTCTTGGCGTCACG CTCAGCGAAGCCACAGACGACAGCGACGACAGTGGCCTCCCCGGCCGCCGGCTGCTGAGT ATGTCTTTCCACGACGCCGACCACGGGGTGCACGGCGGCGATCATCGGCGGCTGAGTATG TCTTTCCACGATGCTGACCACGAGGTGCACGGCGGCGAGCATCGGCGTTTGAGTATGTCT TTGAACGACGCCGACCCCGAGGAGCAAGGCGGCGAGCATCGGCGTCTGAGTATGTCTTTA AACGACGCCGACCCCGAGGTGCAAGGCGGCGAGCATCGGCGGCTGAGTATATCTTTGAAC GACGCCGACCCCGAGGTGCACGGCGACGAGCATCGGCGGCTGAGTATGTCTTTGAACGAC GCCGACACCGAGGTGCACGGCGGCGAGCATCGGCAGCTGAGCATGTCTTTGAACGACGCC GACACCGAGGTGCACGGCGGCGAGCATCGGCGGCTGAGTATGTCTTTGAACGAGGCCGGC ACCGAACAGCCCAGCGGCGAGCATCGGCAGCTGAGTGTGTCTTCCAGTGACGCTGGCTCC TCCACGGACTCCACCTCCGACTCCGATACGCCCGGCGGCGACCCCAAGGAGCCCGCGGCC GTTGATGACTCCAAAAACGCCGTCCCCGGGGAGCCCGCCGCCGCCGCCGCCGCCGAGCAT CGGCAGCTGGGCACGCTTTTCAACGCTATCCACAACATGACGAGCAAGGCCGACACCGTC AAGCGCCGGCTGCTGAGCATGCCACAAGACGGCTCCGACGCCACCGAGCACGAGGGCGGC GGGCGCGCGCTTCTGTCCATCCAGCTCCAGAGCATCGCCGACATGTCCGCCGAGATGAAC CGCCACCTCCTCGCGGCGGAGCTCCCCGACGAGCTCGCCGGCAAGCGGCAGCTCCTGTCC ACGACGCTCAGGGAGCTCAACGAAGCAACCACGGCGGCGAAGGGCCAGCTCGACAAGATC GAGAACGGCACGGTGCACTCCGACGCCATCCCGGAGCGAATTCTCGGAGATGAGTACAGG GCCACCCCCCACCACCGGCTGCTCACCACGGACGTCGTCGGCACGATCGAAGACATCGAA CACGAGCGCCACAACCAGCCCAAGCCCGGCGAGTTCCCGTCGTGGGTGTCCGCCCACCAG CGGCGTCTCCTGCAGGCCGGCACGCAGAAGCCCGACAAGGTGGTCGCCAAGGACGGGAGC GGCGACTTCAAGACGATCACCGAGGCCGTCAACGCCGTGCCCAAGAACTCCCCGACCCGC TTCGTCATCTACGTGAAGGCCGGCGAGTACAACGAGTACGTCACCATCCCCAGCTCGTTG CCCAACATCTTCATGTACGGCGACGGCCCGACCAAGACGCGCGTCCTCGGCAACAAGAGC AACAAGGACGGCGTCGCCACCATGGCCACCCGCACCTTCTCGGCGGAGGGGAATGGATTC GTGTGCAAGTCGATGGGGTTCGTGAACACGGCGGGGCCGGAGGGGCACCAGGCGGTGGCG CTGCACGTGCAGGGGGACATGTCGGTGTTCTTCAACTGCAAGTTCGAGGGGTACCAGGAC ACGCTGTACGTGCACGCCAACAGGCAGTTCTTCCGGAACTGCGAGGTGACGGGGACCATC GACTACATCTTCGGCAACTCGGCGGCGGTGTTCCAGAGCTGCCTCATGACGGTGCGGAAG CCGATGGACAACCAGGCGAACATGGTGACGGCGCACGGGCGCACCGACCCCAACATGCCC ACCGGCATCGTGCTCCAGGATTGCCGCATCGTGCCGGAGCAGGCGCTCTTCCCCGTCCGC CTCCAGATCGCCAGCTACCTCGGCCGGCCATGGAAGGAGTACGCGAGGACGGTGGTGATG GAGAGCGTCATCGGCGACTTCATCAAGCCGGAGGGGTGGTCGGAGTGGATGGGCGACGTG GGGCTCAAGACGCTCTACTACGCCGAGTACGCCAACACCGGGCCAGGCGCCGGCACAAGC AAGAGGGTGACGTGGCCGGGATACCGCGTCATCGGCCAGGCCGAGGCCACGCAGTTCACC GCCGGCGTCTTCATCGACGGCTTGACGTGGCTCAAGAACACCGCCACGCCCAACGTCATG GGCTTCGTCAAATGATCGATCACGTATCATATGCCATCATCACATCGAGTCTCCACACTT AATTTGCTAGTATATATTTGTTTAGTTTGCGAGGAATTTTACGGTCAGGTACCACCAGTT ACGTTAACTCGTTGTGTATGGTACATTTTTTTTTGCCTCGTCAGGCATTGAAGCACACTT AGACAAGTGCGTGTGTATTTAAGAGGAAATGTACATGTGGAGGATATGAAAAAGAATGTA TTATGCATTTTAATTTATCAACTTACTATACACCAAGTGAGAAGCACTACATAT