Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0640600-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:32582187:32585691:-1 gene:Os04g0640600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Shikimate kinase 3 description:Shikimate kinase. (Os04t0640600-01);Similar to OSIGBa0138H21-OSIGBa0138E01.13 protein. (Os04t0640600-02)
Sequence	ATGGACGCCGGTGTGGGTCTCCGGGCGAAGCCCGGCGCCTGGGCCGGACTCGGAAACCCA CGCCGCTCTTCCACGGCGAGGGTTCCGGTGAGGTTCGCGGTGGAGAAGTTCGCTCAGCCG TTGGTTTTGGGCTCTGATCGCCGGAGCTGCGGTGCCAAACTGAAGGTTTCGTGTTCCAGG AAACCGGCAGGTATTGACAAAACCTATTACTCTGCTGATGAAGCTCTTGTTCTAAAGCAA AAAGCAGAGGACGTGGTCCCTTATTTGAATGACCGGTGTATTTACTTAGTTGGAATGATG GGTTCTGGCAAAACTACAGTTGGGAAGATATTAGCTGAAGTATTAGGCTATTCTTTCTTT GACAGCGATAAGTTGGTTGAGAAGGCAGTTGGCATATCATCTGTTGCTGAAATCTTTCAG CTCCATAGTGAAGCATTCTTCAGAGATAATGAGGAGTTACATGAAGAAAGGGTCAACAAT CTGGTTAGATGTTCCATTGGATGCACTTGCAAGACGAATTGCTGCAGTAGGAACTGCTTC TCGGCCCCTCTTGCATCAAGAATCTGGTGA

Peptide Sequence

PEP ID	Os04t0640600-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:32582187:32585691:-1 gene:Os04g0640600 transcript:Os04t0640600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Shikimate kinase 3 description:Shikimate kinase. (Os04t0640600-01);Similar to OSIGBa0138H21-OSIGBa0138E01.13 protein. (Os04t0640600-02)
Sequence	MDAGVGLRAKPGAWAGLGNPRRSSTARVPVRFAVEKFAQPLVLGSDRRSCGAKLKVSCSR KPAGIDKTYYSADEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFF DSDKLVEKAVGISSVAEIFQLHSEAFFRDNEELHEERVNNLVRCSIGCTCKTNCCSRNCF SAPLASRIW

Transcript Sequence

Transcript ID	Os04t0640600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:32582187:32585691:-1 gene:Os04g0640600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Shikimate kinase 3 description:Shikimate kinase. (Os04t0640600-01);Similar to OSIGBa0138H21-OSIGBa0138E01.13 protein. (Os04t0640600-02)
Sequence	GTCCCTCTCCCTCCGCTCGTCCCTGCACACAGAATCCTCCTCCTCTTCCTCCGCGGCGGC GCCGCCGCCGCCGAGTTCTCCATTGATCCGGCGATGGCCGGCAAATCCAATCCCGTCTCC AACAATCAGGAATAATTAAGACCCTGTCGTTGTCGGGTCTGATCGATTTGGAGAGGAGAT GGACGCCGGTGTGGGTCTCCGGGCGAAGCCCGGCGCCTGGGCCGGACTCGGAAACCCACG CCGCTCTTCCACGGCGAGGGTTCCGGTGAGGTTCGCGGTGGAGAAGTTCGCTCAGCCGTT GGTTTTGGGCTCTGATCGCCGGAGCTGCGGTGCCAAACTGAAGGTTTCGTGTTCCAGGAA ACCGGCAGGTATTGACAAAACCTATTACTCTGCTGATGAAGCTCTTGTTCTAAAGCAAAA AGCAGAGGACGTGGTCCCTTATTTGAATGACCGGTGTATTTACTTAGTTGGAATGATGGG TTCTGGCAAAACTACAGTTGGGAAGATATTAGCTGAAGTATTAGGCTATTCTTTCTTTGA CAGCGATAAGTTGGTTGAGAAGGCAGTTGGCATATCATCTGTTGCTGAAATCTTTCAGCT CCATAGTGAAGCATTCTTCAGAGATAATGAGGAGTTACATGAAGAAAGGGTCAACAATCT GGTTAGATGTTCCATTGGATGCACTTGCAAGACGAATTGCTGCAGTAGGAACTGCTTCTC GGCCCCTCTTGCATCAAGAATCTGGTGATCCTTATGCAAAGGCTTATGCAAAACTGACTG CACTTTTTGAACAAAGAATGGACTCATATGCTAATGCTGATGCCAGGGTTTCACTCGAAC ATATTGCAGTGAAACAAGGACATAGTAATGTGACGACACTTACACCAAGTGCCATTGCTA TTGAGGCATTGCTAAAGATGGAGAGCTTTCTTACTGAGAAGGCAATGATCAGAAACTAAC CACTTTTGGGTGGTTAAAAGCACATCAACAAACAAAATCTCTTGTTTGTTCTGTTGTATT TATCGCATATACCTAAGGCGTGTTTCTTAGTATAGCATGAACTTGTTAGTCACCCAGTAT GAAGGAGGGTGATTTGAGTTTGAACTTGTGTAAATGGATAAGTAATAGCTTTCAATTGAA AGAAAAGTTTGTGTTGTGTTTTGTGCCG