Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0636700-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:32378971:32382044:-1 gene:Os04g0636700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 117M18_7. (Os04t0636700-01);Hypothetical conserved gene. (Os04t0636700-02)
Sequence

ATGAACAACAGCGCGTTCAGCGAGGAGATACTCGCCGAGAAGCTCGCCAAGCTCAACAAC
ACGCAGCAATGCATCGAGACTCTTTCGCATTGGTGCATATACCATCGGAAGAATGCAGAG
CAAATTGTCCAGACATGGGCGAAGCAGTTTCACAGCTCTGGAAATGAACAGAAGACCCCT
TTTCTCTATCTTGCTAATGATATCTTACAGAACAGTAAGCGCAACGGTACAGAGTTTGTA
GAAGAATTCTGGAAGGTTCTCCCTGGTGCGTTGAAAGATGTAACTGAAAACGGTGATGAG
CGCGGGAAGAAGGTGGTCAGTAGGCTGGTTGAAATATGGCAAGAAAGGAGAGTTTTTGGT
TCACGTGCGGGGGGCATCAAGGATGTGATGCTTGGAACTGTTCCCCTGCCTGTATTAGAT
ATGACCAAAAAACGGTCTCACGGTTCCTCAATAAAGATCGTCAAAAGAGACTCTCGTTCT
GTAAAACTTAGACTAGGTGTTGGGGGAACCGCTGAGAAGATTGTATCTGCACTGCACACT
GTTCTCAGTGAACAAGCAGATGAAGACTCTGATCTGGAGAAATGCAAAACCTCAATGCGG
CGTGTTGGAAAGATGCAGAAGGATGTTAGCAGTGCTTGTAGTAAAGGTGATGATCCTCGT
CGTGAAACCCTTTGCACAGAACTAAAGGAAGAGGAGGATAGCATGACAGAATGCATTGAA
AAGCTTAAAGTAGTTGAAGCAAATAGAGCAACTGTTGTGTCTGAACTGAAGGAGGCATTG
CAGGAACAGGAATCTGAGCTGGAGAAAGTCCGTACTCAGTTACAGCTGGCTGAAGCTATG
GTAGAAGAAGCAGCCGACATGCAACGGAAACTCAAGAACGAGCCAGTCATTCCTTCGTCC
AAGCACTTATCCTCAGTAGAACCAGGAAAGCCACTTTCTAATGGGCAGGCGAAGGATCAG
CAGAAGACAGCTGCTGCTATCCTCGCAGACAAGATTGCAGCATCATCAAACTCTCAGCAG
ATACTGCAATCTGCACTTTCCAAGTTTGCTGCTGAGGAAGCCAAAAATTCATCCGAAACT
CACCAGGATAAGAGGCTGAAAATTGAACATTCCTCACAGGTCCCAAGTGTCGCGAATGCT
GCCGCTTTTGTTCCAATGCCACAAATGACCACCACAACAGCACAGCAGCCCCAGGCAATC
TTAGTTCAGCAGACTCCTATGCAAAACCAGCCTCCTGCACCTCAACCCCAATACAATATC
TACCAGGCCCCTCCCCATCAGTTTGTCCAGCAGCCTGGTGGTGTAATGATGGGCATGGCG
TACAATATGAGCACCATGGCTCCACCACCGCCTCCACCGCCACAGATGATGAACCTAGCA
AGGCCCTCACCTTCAACACCCCAGCCACCAATGGGTATAATGCCACAGACTCAGCCGCCA
CCGCCCGCACCAACGATGCTTCAGCAACAAATGCCGATGAACGTCGGACCACCAATGCAG
TTCGCCCTTCAGCAGTCCGGCGCGCCGTCTTTCAGGCCTTTGCAGCCGCCCCCGGGGATG
CAATTCTTCCACCCCCAATCTCAGTGA

Peptide Sequence

PEP ID

Os04t0636700-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:32378971:32382044:-1 gene:Os04g0636700 transcript:Os04t0636700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 117M18_7. (Os04t0636700-01);Hypothetical conserved gene. (Os04t0636700-02)
Sequence

MNNSAFSEEILAEKLAKLNNTQQCIETLSHWCIYHRKNAEQIVQTWAKQFHSSGNEQKTP
FLYLANDILQNSKRNGTEFVEEFWKVLPGALKDVTENGDERGKKVVSRLVEIWQERRVFG
SRAGGIKDVMLGTVPLPVLDMTKKRSHGSSIKIVKRDSRSVKLRLGVGGTAEKIVSALHT
VLSEQADEDSDLEKCKTSMRRVGKMQKDVSSACSKGDDPRRETLCTELKEEEDSMTECIE
KLKVVEANRATVVSELKEALQEQESELEKVRTQLQLAEAMVEEAADMQRKLKNEPVIPSS
KHLSSVEPGKPLSNGQAKDQQKTAAAILADKIAASSNSQQILQSALSKFAAEEAKNSSET
HQDKRLKIEHSSQVPSVANAAAFVPMPQMTTTTAQQPQAILVQQTPMQNQPPAPQPQYNI
YQAPPHQFVQQPGGVMMGMAYNMSTMAPPPPPPPQMMNLARPSPSTPQPPMGIMPQTQPP
PPAPTMLQQQMPMNVGPPMQFALQQSGAPSFRPLQPPPGMQFFHPQSQ

Transcript Sequence

Transcript ID

Os04t0636700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:32378971:32382044:-1 gene:Os04g0636700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 117M18_7. (Os04t0636700-01);Hypothetical conserved gene. (Os04t0636700-02)
Sequence

ACCCCCTCTTCTTTCTTACCTCCCCCAAACCCTAGCCATCCCGATCCATCCACTCCTCGA
GATTTCGGCGGAATGCCTCCGCCGCCGCCGCGGTCTCCTCGCTCCCTTTCCAGCTAGGGC
TCTCCCTGCCCACACCCTCCCCCGCCCGCGAGATTTGCGCGCCCCCGCCCAGCGCCGATT
CGAGCTGCTCCTGCTTTGCTGTTTCGGTGGGGGAGGCCATGAACAACAGCGCGTTCAGCG
AGGAGATACTCGCCGAGAAGCTCGCCAAGCTCAACAACACGCAGCAATGCATCGAGACTC
TTTCGCATTGGTGCATATACCATCGGAAGAATGCAGAGCAAATTGTCCAGACATGGGCGA
AGCAGTTTCACAGCTCTGGAAATGAACAGAAGACCCCTTTTCTCTATCTTGCTAATGATA
TCTTACAGAACAGTAAGCGCAACGGTACAGAGTTTGTAGAAGAATTCTGGAAGGTTCTCC
CTGGTGCGTTGAAAGATGTAACTGAAAACGGTGATGAGCGCGGGAAGAAGGTGGTCAGTA
GGCTGGTTGAAATATGGCAAGAAAGGAGAGTTTTTGGTTCACGTGCGGGGGGCATCAAGG
ATGTGATGCTTGGAACTGTTCCCCTGCCTGTATTAGATATGACCAAAAAACGGTCTCACG
GTTCCTCAATAAAGATCGTCAAAAGAGACTCTCGTTCTGTAAAACTTAGACTAGGTGTTG
GGGGAACCGCTGAGAAGATTGTATCTGCACTGCACACTGTTCTCAGTGAACAAGCAGATG
AAGACTCTGATCTGGAGAAATGCAAAACCTCAATGCGGCGTGTTGGAAAGATGCAGAAGG
ATGTTAGCAGTGCTTGTAGTAAAGGTGATGATCCTCGTCGTGAAACCCTTTGCACAGAAC
TAAAGGAAGAGGAGGATAGCATGACAGAATGCATTGAAAAGCTTAAAGTAGTTGAAGCAA
ATAGAGCAACTGTTGTGTCTGAACTGAAGGAGGCATTGCAGGAACAGGAATCTGAGCTGG
AGAAAGTCCGTACTCAGTTACAGCTGGCTGAAGCTATGGTAGAAGAAGCAGCCGACATGC
AACGGAAACTCAAGAACGAGCCAGTCATTCCTTCGTCCAAGCACTTATCCTCAGTAGAAC
CAGGAAAGCCACTTTCTAATGGGCAGGCGAAGGATCAGCAGAAGACAGCTGCTGCTATCC
TCGCAGACAAGATTGCAGCATCATCAAACTCTCAGCAGATACTGCAATCTGCACTTTCCA
AGTTTGCTGCTGAGGAAGCCAAAAATTCATCCGAAACTCACCAGGATAAGAGGCTGAAAA
TTGAACATTCCTCACAGGTCCCAAGTGTCGCGAATGCTGCCGCTTTTGTTCCAATGCCAC
AAATGACCACCACAACAGCACAGCAGCCCCAGGCAATCTTAGTTCAGCAGACTCCTATGC
AAAACCAGCCTCCTGCACCTCAACCCCAATACAATATCTACCAGGCCCCTCCCCATCAGT
TTGTCCAGCAGCCTGGTGGTGTAATGATGGGCATGGCGTACAATATGAGCACCATGGCTC
CACCACCGCCTCCACCGCCACAGATGATGAACCTAGCAAGGCCCTCACCTTCAACACCCC
AGCCACCAATGGGTATAATGCCACAGACTCAGCCGCCACCGCCCGCACCAACGATGCTTC
AGCAACAAATGCCGATGAACGTCGGACCACCAATGCAGTTCGCCCTTCAGCAGTCCGGCG
CGCCGTCTTTCAGGCCTTTGCAGCCGCCCCCGGGGATGCAATTCTTCCACCCCCAATCTC
AGTGACATTTTTGGTAGTCCAGCTCCTGTTAAAACTGTCGCGTTTTCGGTGTTAGTATTG
ACTGGTAGACAAAAGGTTCTGACTGTTGTAGGGTATACTGTTTGGTTGTTCTTTACCTGG
AGATGTTGTACATGTAATGCGAGGAAACTAACAGGAAGATTCAGTTAAGTGTT