Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0629300-02
CDS Infomation	cds chromosome:IRGSP-1.0:4:32009536:32016403:-1 gene:Os04g0629300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0303G06.18 protein. (Os04t0629300-01);DEAD-like helicase, N-terminal domain containing protein. (Os04t0629300-02)
Sequence	ATGGATATTATTGACTTGTGTTCAGACAGTGAAGAGTACTTCAGCCCGTACTCAGATACA GAAGACAATCTTGATTTTGACGATCCCAATGATGGTGTTAACCAGGTGGTTTTGCACAAC ACAGCATTTGGCAATAATAGTTCAGAACTACTAGTCGGGCTGGATGACGATAACTGGTTA AACAACACTCATGCTTTATCCTCTCATAGACCTGCTGAGAATAGATCAGACATTATTGAA AGCAGCAGCGGTGTCAACACTGACTGTCAGAATAGTGCTTGGCAATACAGGACTCTTCCA CATACCTTCATGAGCAGCAGTTACAAGTCTCGTCCACTTTCTCTAACAGGAGGTAACAAT GTTGAAAGTACACACCCCACTGTGAAGCCTAACACTGTGCACTATAATGGAATTGGGTTC CCTTCACCTGCTATTGCAAGTGGCTACAAGCCATATGTTAGTTATGGCCAGGGTGTTTCA ATTGATGATGATGACGATGATGTCTATGAGGTTCTGCATCAACCATTTCCGTTCAGTCAT TCGAGTTTAGGTGACAAGAAGATCGAGGAAGAATCCACTTGGAAGTACAATGGTTTTCAA ACAAGTTCTGCCTATGGAATCGAGATGCCTACATCTGCAATGTCAACAGGTGGTGTCTCT GCATATGGAGGTCTAAACTCACATAGGATCTTTCCTCCATCAGTGCCATACAACAATTCT GTTAACAATTTTGGAGTCAATGGCCTTGGCACTCAGAGCCACTTAAATATAGAAAAGAGG CTTTTTGGCCGTGATGAGAGGGTGGTGTATGATGAAGCCCTGAAGCAAATCAGTCAAGAA ACAACGGAAGAAAATTTGCCTGAAGGTGTTATGTCAGTATCACTCCTTAAGCACCAGAGA ATAGCATTAGCTTGGATGGTTTCCAGGGAGAATAGCTCACATTGTTCAGGTGGAATTTTG GCAGACGATCAGGGTCTTGGGAAGACAATATCAACTATTGCCCTTATACAAAAGGAGAGG GTTGAGCAGTCTAAGTTCATGTCTGCTGATGTGGGCAGCATGAAATCTGTAGCTAACCTT GATGAGGATGATGAAGTAGTGATAGTCATGGACAAGAAGCAACTGAAGGGTGAATCTGTG AATATGCTACAGGATTCAACACTGTTTCCATCATCAGAAGCAGCAAGTGATGCCGCAGAT CTGAAGCCCTGGGCTAGTCTACCGGGGTCTGCTGTTGATAGAATGGTAAATGCTGTCAAA GTTGAACCCAAGAAGAAGGCTAGAGTGAGACCATCGCCTTCGTCAACTTTGAGGTCTGCT AATAGATCAACTGCGGGAACACTAGTGGTGTGTCCAGCCAGCGTTCTTAGACAGTGGGCT AGTGAGTTGGCTGCCAAGGTTACTGAAAGTTCTAAATTGTCTGTTTTGGTTTATCATGGA GGTTCAAGGACTAAAGATCCAACTGAGTTGACAAAATATGATGTTGTTGTCACCACATAC ACTATTGTAGCCAATGAGGTACCCAAACAAAACTTTGATGAGGATATGGAGGAAAAGAAC AGCGAAACATATGGGTTATGTCCAGCATTTTCTATTGGCAATAAAAGAAAGAAAGACAGC GAACCAAAGAAGAAAAAGAAACCCAAAAATTCAGATGCTGACCTTGATGGTGGACCACTT GCCAGAGTGCGATGGTTCAGAGTTGTGCTTGATGAAGCTCAAACAATAAAGAATCACAAT ACTCAAGTGGCTAGAGCCTGTTGTGGACTGAGAGCAAAACGGAGATGGTGTTTATCAGGA ACTCCTATACAAAATACAATTGATGATCTGTATAGTTATTTCCGTTTCTTGAAGTATGAA CCATATTCTGTGTATGGTTCCTTTCGCTCTATGATAAAATACCAAATTTCTAGAGATGCA ACTCGTGGATATAAGAAACTCCAAGCTGTCTTGAAGATAGTTCTGTTGCGGCGCACAAAA GAAACACTAATCGATGGAGAACCAATCATAAAATTGCCACCAAAAACGATTCAGCTGAGC AAAATAGACTTCTCAAAAGAGGAGCGAACTTTCTATATGATGCTTGAAGAAGGTTCTAGG GAAAAGTTCAAGGAATATGCTTCTGCTGGGACGATAAGAGAAAATTTTGCAAACATTCTT GTATTGCTGCTGCGACTTCGGCAGGCTTGTGACCATCCTCTTCTTTTGAAGGGAAAGGAA AAAGATTTGATTGATACTGGTTCTGTAGAAGTGGCAAACAAACTTCCTAAGGAAACAGTG ATAAATTTGCTTGGACAGCTGGAAGGAGACTATGCAATTTGTTCCAGATGCAGTGACCCA CCTGAGGATGTTGTTGTAGCAACATGTGGTCATGTTTTCTGTTATCAGTGTGTGCATAAG AGCTTAACAAGTGATGAGAATGTCTGTCCCTCCCCTTCTTGTGGGAAGAAATTAAGCGCT CAAACAGTTTTTTCACCTGGAGTGTTAAGGTTTTGTATAGCTGATAAATTGGAGTCTGGT GCAACAACTAGTAGTTCTGTAGAAGCAGATGGCTCTCCATCAATCTGTGAAAGCAGTTAC ATATCTTCTAAGATCAGGGCAACCACTGACATACTTAACTCAATCGTGAATACACCTGCT CTAACTTGGAGTGATACTATGGAATCAAGTCCAAGTGAAGTAGCCCCTTCTAAGGCGATA GTATTCTCCCAGTGGACTGGCTTGCTGGACTTGCTGGAGCTTTCGCTGGATAGCAGCCGT ATAAAATTCAGAAGGCTTGATGGTGCAATGTCTCTCAACTTAAGAGAAGCAGCAGTGAGA GAATTCAACACTGATCCAGAGGTGAGAGTGATGCTCATGTCACTTAAGGCTGGAAATCTT GGTCTCAACATGGTAGCTGCTTGCCATGTGATTATGATTGATCCATGGTGGAACCCTTAT GCTGAGGACCAGGCAGTTGATAGAGCACACAGAATTGGTCAGACCCGTCCTGTAACCGTT TCCCGCTTAACTATCAAAGACACAGTGGAAGATCGGATTTTAGCTCTACAGGAGAAGAAG AGAAAGATGGTCCAATCTGCTTTTGGTGAGGACAAACCTGGCGGCAGTGCAACTCGGCTC ACCATAGATGATCTCCAATATCTATTCGGAATATGA

Peptide Sequence

PEP ID	Os04t0629300-02
PEP Infomation	pep chromosome:IRGSP-1.0:4:32009536:32016403:-1 gene:Os04g0629300 transcript:Os04t0629300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0303G06.18 protein. (Os04t0629300-01);DEAD-like helicase, N-terminal domain containing protein. (Os04t0629300-02)
Sequence	MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFGNNSSELLVGLDDDNWL NNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHTFMSSSYKSRPLSLTGGNN VESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVSIDDDDDDVYEVLHQPFPFSH SSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGGVSAYGGLNSHRIFPPSVPYNNS VNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQISQETTEENLPEGVMSVSLLKHQR IALAWMVSRENSSHCSGGILADDQGLGKTISTIALIQKERVEQSKFMSADVGSMKSVANL DEDDEVVIVMDKKQLKGESVNMLQDSTLFPSSEAASDAADLKPWASLPGSAVDRMVNAVK VEPKKKARVRPSPSSTLRSANRSTAGTLVVCPASVLRQWASELAAKVTESSKLSVLVYHG GSRTKDPTELTKYDVVVTTYTIVANEVPKQNFDEDMEEKNSETYGLCPAFSIGNKRKKDS EPKKKKKPKNSDADLDGGPLARVRWFRVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSG TPIQNTIDDLYSYFRFLKYEPYSVYGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTK ETLIDGEPIIKLPPKTIQLSKIDFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANIL VLLLRLRQACDHPLLLKGKEKDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDP PEDVVVATCGHVFCYQCVHKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESG ATTSSSVEADGSPSICESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAI VFSQWTGLLDLLELSLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNL GLNMVAACHVIMIDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKK RKMVQSAFGEDKPGGSATRLTIDDLQYLFGI

Transcript Sequence

Transcript ID	Os04t0629300-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:32009536:32016403:-1 gene:Os04g0629300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0303G06.18 protein. (Os04t0629300-01);DEAD-like helicase, N-terminal domain containing protein. (Os04t0629300-02)
Sequence	GAGAGAGTTTTTCCGATTCGGCCGCCGCGCGGCCGTCACGAACCAGATAAAATCTCCACG CAGTTCCCCTCAAAAAGAAATTTGGTTGATTTTGATTTGATTTGATTCGTGTGCTCCCCG CCGCCTTCGATCCCTCCAACGGATAATCGCCGCCGACGACGACGATTCGGAGGAGAAGAT AGTATTCAAGTGGGTTCATCAAGATAATTTGTTTGCAGTGTGCTGGAGATAGTGTGGTCT GACCAGGCTTGTTGGGGATTAGTGAAGCTAAGCATCGCAGATATCTGACAACAGAGAGTT GATGCCCATGTTTGCTAGCACAATATGGATATTATTGACTTGTGTTCAGACAGTGAAGAG TACTTCAGCCCGTACTCAGATACAGAAGACAATCTTGATTTTGACGATCCCAATGATGGT GTTAACCAGGTGGTTTTGCACAACACAGCATTTGGCAATAATAGTTCAGAACTACTAGTC GGGCTGGATGACGATAACTGGTTAAACAACACTCATGCTTTATCCTCTCATAGACCTGCT GAGAATAGATCAGACATTATTGAAAGCAGCAGCGGTGTCAACACTGACTGTCAGAATAGT GCTTGGCAATACAGGACTCTTCCACATACCTTCATGAGCAGCAGTTACAAGTCTCGTCCA CTTTCTCTAACAGGAGGTAACAATGTTGAAAGTACACACCCCACTGTGAAGCCTAACACT GTGCACTATAATGGAATTGGGTTCCCTTCACCTGCTATTGCAAGTGGCTACAAGCCATAT GTTAGTTATGGCCAGGGTGTTTCAATTGATGATGATGACGATGATGTCTATGAGGTTCTG CATCAACCATTTCCGTTCAGTCATTCGAGTTTAGGTGACAAGAAGATCGAGGAAGAATCC ACTTGGAAGTACAATGGTTTTCAAACAAGTTCTGCCTATGGAATCGAGATGCCTACATCT GCAATGTCAACAGGTGGTGTCTCTGCATATGGAGGTCTAAACTCACATAGGATCTTTCCT CCATCAGTGCCATACAACAATTCTGTTAACAATTTTGGAGTCAATGGCCTTGGCACTCAG AGCCACTTAAATATAGAAAAGAGGCTTTTTGGCCGTGATGAGAGGGTGGTGTATGATGAA GCCCTGAAGCAAATCAGTCAAGAAACAACGGAAGAAAATTTGCCTGAAGGTGTTATGTCA GTATCACTCCTTAAGCACCAGAGAATAGCATTAGCTTGGATGGTTTCCAGGGAGAATAGC TCACATTGTTCAGGTGGAATTTTGGCAGACGATCAGGGTCTTGGGAAGACAATATCAACT ATTGCCCTTATACAAAAGGAGAGGGTTGAGCAGTCTAAGTTCATGTCTGCTGATGTGGGC AGCATGAAATCTGTAGCTAACCTTGATGAGGATGATGAAGTAGTGATAGTCATGGACAAG AAGCAACTGAAGGGTGAATCTGTGAATATGCTACAGGATTCAACACTGTTTCCATCATCA GAAGCAGCAAGTGATGCCGCAGATCTGAAGCCCTGGGCTAGTCTACCGGGGTCTGCTGTT GATAGAATGGTAAATGCTGTCAAAGTTGAACCCAAGAAGAAGGCTAGAGTGAGACCATCG CCTTCGTCAACTTTGAGGTCTGCTAATAGATCAACTGCGGGAACACTAGTGGTGTGTCCA GCCAGCGTTCTTAGACAGTGGGCTAGTGAGTTGGCTGCCAAGGTTACTGAAAGTTCTAAA TTGTCTGTTTTGGTTTATCATGGAGGTTCAAGGACTAAAGATCCAACTGAGTTGACAAAA TATGATGTTGTTGTCACCACATACACTATTGTAGCCAATGAGGTACCCAAACAAAACTTT GATGAGGATATGGAGGAAAAGAACAGCGAAACATATGGGTTATGTCCAGCATTTTCTATT GGCAATAAAAGAAAGAAAGACAGCGAACCAAAGAAGAAAAAGAAACCCAAAAATTCAGAT GCTGACCTTGATGGTGGACCACTTGCCAGAGTGCGATGGTTCAGAGTTGTGCTTGATGAA GCTCAAACAATAAAGAATCACAATACTCAAGTGGCTAGAGCCTGTTGTGGACTGAGAGCA AAACGGAGATGGTGTTTATCAGGAACTCCTATACAAAATACAATTGATGATCTGTATAGT TATTTCCGTTTCTTGAAGTATGAACCATATTCTGTGTATGGTTCCTTTCGCTCTATGATA AAATACCAAATTTCTAGAGATGCAACTCGTGGATATAAGAAACTCCAAGCTGTCTTGAAG ATAGTTCTGTTGCGGCGCACAAAAGAAACACTAATCGATGGAGAACCAATCATAAAATTG CCACCAAAAACGATTCAGCTGAGCAAAATAGACTTCTCAAAAGAGGAGCGAACTTTCTAT ATGATGCTTGAAGAAGGTTCTAGGGAAAAGTTCAAGGAATATGCTTCTGCTGGGACGATA AGAGAAAATTTTGCAAACATTCTTGTATTGCTGCTGCGACTTCGGCAGGCTTGTGACCAT CCTCTTCTTTTGAAGGGAAAGGAAAAAGATTTGATTGATACTGGTTCTGTAGAAGTGGCA AACAAACTTCCTAAGGAAACAGTGATAAATTTGCTTGGACAGCTGGAAGGAGACTATGCA ATTTGTTCCAGATGCAGTGACCCACCTGAGGATGTTGTTGTAGCAACATGTGGTCATGTT TTCTGTTATCAGTGTGTGCATAAGAGCTTAACAAGTGATGAGAATGTCTGTCCCTCCCCT TCTTGTGGGAAGAAATTAAGCGCTCAAACAGTTTTTTCACCTGGAGTGTTAAGGTTTTGT ATAGCTGATAAATTGGAGTCTGGTGCAACAACTAGTAGTTCTGTAGAAGCAGATGGCTCT CCATCAATCTGTGAAAGCAGTTACATATCTTCTAAGATCAGGGCAACCACTGACATACTT AACTCAATCGTGAATACACCTGCTCTAACTTGGAGTGATACTATGGAATCAAGTCCAAGT GAAGTAGCCCCTTCTAAGGCGATAGTATTCTCCCAGTGGACTGGCTTGCTGGACTTGCTG GAGCTTTCGCTGGATAGCAGCCGTATAAAATTCAGAAGGCTTGATGGTGCAATGTCTCTC AACTTAAGAGAAGCAGCAGTGAGAGAATTCAACACTGATCCAGAGGTGAGAGTGATGCTC ATGTCACTTAAGGCTGGAAATCTTGGTCTCAACATGGTAGCTGCTTGCCATGTGATTATG ATTGATCCATGGTGGAACCCTTATGCTGAGGACCAGGCAGTTGATAGAGCACACAGAATT GGTCAGACCCGTCCTGTAACCGTTTCCCGCTTAACTATCAAAGACACAGTGGAAGATCGG ATTTTAGCTCTACAGGAGAAGAAGAGAAAGATGGTCCAATCTGCTTTTGGTGAGGACAAA CCTGGCGGCAGTGCAACTCGGCTCACCATAGATGATCTCCAATATCTATTCGGAATATGA GGGCAGCTCATGATCCTTTTGTGGAGCTAGCTGGTGAATTTTGTCGTAGCAAGACTGACA TAGTCCTATCAGCTATAGCTGATGACAAAGCCTTAGCACCATTAATTTATGCACCCGATG TTCCTCACCATGGGTGATGCCATGTCTTTTGAATTGCTCTGATCATTGGACAGAGAGGGT TAGTTAGCTTTTGTAATTAGATTATGTTCGCCGTCGCTGGAATGGGATGTTAGGAGGTCT TACATCAGAAGCAGCCTTTTTTTGTGTGTATATATATATGGCATGCTAATTTTAATGTTG GTTCTCTGATGGAATGCATT