Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0628600-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:31982348:31992462:-1 gene:Os04g0628600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0628600-01)
Sequence	ATGGAGTCGATCATAGCGCGGGCGCTGGAGTACACGCTCAAGTACTGGCTCAAGTCCTTC TCCCGCGACCAGTTCAAGCTGCAGGGCCGCACCGCGCAGCTCTCCAATCTCGATATCAAT GGCGACGCGTTGCACGCGAGCCTGGTGCTGCCTCCGTCGCTCGCCGTCGAGACCGCGCGA GTCGGGAAGCTCCAGATCACGCTTCCATCAGTGTCAAATGTGCAAGTAGAACCAATTGTG GTGAACATTGATAAGCTTGACCTCGTTCTTGTTGAGAAGGACAATTCTGAAGATCTTTCA AGCACTAGCAGTGCTTTATCGCCATCACCAGCTAAAAACAGCGGATATGGATATGCTGAT AAGATTGCAGATGGAATGACAGTCCAAGTCGGTATTGTGAACCTTCTATTAGAAACACAT GGTGGTCCACGTCATCAAGGAGGCGCAACTTGGTCACCACCGCTAGCGGCTATCACATTT CGTGATCTTGTACTGTACACTACAAATGAAAAATGGCAGGCTGTAAATCTGAAAGAAGCA AGGGATTTTTCGAACAATAAAGGATTCATTTATATTTTTAAGAAATTGGAATGGCAATCA CTGTCAGTTGATCTGTTACCTCATCCTGACATGTTCACGGATGCTCGGTTTAACTCTTCT AGCAGTGAAGATGGAAAACGAGATGATGATGGTGCAAAACGAATGTTTTTTGGTGGTGAA AGATTTTTGGAAGGAATATCTGGGGAGGCCAACATCACAGTCAAACGAACAGAGCAAAAC AATCCTGTTGGGCTTGAAGTTCAGCTGCATATTACTGAAGCTCTCTGTCCTGCCTTAAGT GAACCTGGTTTGCGGGCTTTTCTTCGGTTCATGACCGGGGTATCTGTGTGCCTAAACAGG GGTGATGTGGATCCAAAAGCTCAACAGCTTGCAGAAGCTGCAGGATCTTCCTTGGTATCC ATTATTGTAGATCATATATTCCTCTGCATTAAGGATGCTGAGTTTCAGCTTGAATTTCTG ATGCAGTCTTTATTCTTCTCACGGGCAAGTGTTCCCGATGGGGGGATTTCAAGAAACTTG TCTTGCATAAAGATTGCCGGGCTCTTTCTGAGGGACACATTTTCTCGTCCACCATGCACA TTGATACAGCCCTCTATGCAATCTGTTCCACAAGAACCTCCACCTGTGCCTGACTTTGGT CAAAATTTTTGTCCTCAAATCCATCCATTTGAGAATCAGCAATTGGAATTCACGTCAGGA ATTCCTTTATTTTCCCTCTATTGTCTTCAGCTCACTCCTTCCCCATTACCTCCAAAGTTT GCTTCAAAAACTGTCATCACATGTGAACCTCTTATGGTAACCCTCCAGGAGCAATCCTGC TTAAGAATTGCCTCATTCTTGGCTGATGGAGTTGTGGCCAACCGCAGTGCCATATTGCCT GATTCTTCAATCAACAGTATGTCATTTTATATTAAAGAATTTGATCTCTCTATTCCATTA GATGCTGAGGAAATCACGAGGTACAGTGGAACTAAGAATGTTTGCCCGCAATCATCATTT ATGGGGGCAAGACTTCATGTGGAAAATCTATACTTCTGCGAGTCACCATCAGAAAAGTGT CTGTTGCTAAACCTTGACAAAGATCCAGCTTGCTTCCTTCTCTGGGGGTACCAACCTGTT GATGCAAGTCAGAGGAAGTGGGCTACTCGAGCTTCTCATCTAAGCCTCTCACTTGAAACC TCTAGCACTTCGAATGAACAGAGAACAGTTAGGGGCTCCTCTCCAAGTTTGTGGAAATGT GTTGAGCTGGATGACATCCGGTTTGAGGCAGCTATGGTTACAGCTGATGGTAGCCCTTTG TTGATTGTGCCACCCCCAGAGGGTGTTGTGAGGATTGGTGTTGCTTTTCAACAGTTTACA ACCAATACTTCAGTAGAGCAGTTGTTTTTTGTGTTAGGTCTCTACACTTATTTTGGCCAG GTTGGAGAACGGATTTCAAAGGTTAGCAAAGGTAACTGCTCTGCGACAAAGACATCAGCT GACAAACGTGAGAGAAAACTGCCTAGTGACACAGCAGTGAGCTTAACTATGAATAGTCTC CAACTCAATTTCTTGGAATCTTTATCATCAAATGACTTACAATTGCCCCTGGTTCAGTTT GGTGGTGAGGATCTGTACCTGAAAGTTTCTCATCGCACTCTTGGTGGTGCCTTTGCAGTT ACAACTAACTTGACATGGAAAACTGTCTCAGTTAATTGTTTGGAAGGAGAAAGTGCTATA TTTGGTGAGAATGGCACTGCAGTTACTGGTGAACCTAATATTTTGTTGCATGAAAATGGG CATCCCAATATGAGAGCTGTGTTTTGGGTTGACCACCGGAATAAGAACCAGTCTAAAGAA GCTCGATTTATTGACATAGACATCACTCACGTAATGCCTTATGACATGCGGGACATGGAG TGCCATAGCTTGAGTGTATCAGCTAAGGTATCTGGTGTTCGTCTTGGTGGTGGAATGAGT TATACTGAATCTTTGCTGCATCGATTTGGTATCCTTGGGCCTGATGGTGGTCCAGGGGAA GGTCTCTTGAGGACTCTGAAAGATTTATCCTCTGGTCCACTTGCGAAACTATTCTCGCCA TCTCACCTCACCGACAAGGAAGATGGAATGCCCAATTCCAAAGACAATGACTACAATTCG AAGTTTGACCTGGAGGTGCCAGATGATCTTGATGTGTCAATTGAGCTACGAAACTGGCTC TTCGCCCTTGAAGGCACAGAAGAAGTAGGAGATTGGTTATCGCCTCATGGCAGTGATCAT ATCAGTAGAGAAGAGAAATGTTGGCATACCACATTCACGAATCTACATGTGTCAGGCAGA AGTAGTGATCGGCCTGGATCTGCGGAGAAGGTGATTCACAAAAGGGCCCTTCCAATAGAA CGTTTTACGGCTGGAATTGAAGGTTTACAGGCAATAAAACCTTGCCTGAGAGATCAACTA ATTGGAAATGCAACATCAAATAATCTTCAAACAGGCAGTGTTTTTGATAACACAAGTAGC ATTGGTGACCAAGGTGTCGATGTTGAAGCGACCATGGTCATTTGCGAAGATGAGATTGAA GGTCCCAAGTGGACAATGGATAATGTCAAGTTTTCTGTAAAAGAACCGATTGAGGCAGTT GCAACAAAAGAAGAATTAGAGCATCTCACCATGCTTTGTAGATCTGAAGCTGATGCAATG GGGAGGATCACTGCTGGAATTCTCCGTCTCCTTAAGCTTGATAAGTCTCTTGGCCAGGGG ACTATAGAACAACTCAGGAACCTAGGAAGCGGAGGAATCGACAATACTTTTTCACCTAGG AAGTTGAGCAGGCAGAACAGTTTTGGCAGCATAGGTACTCCTAGGACTCCTAATCTGCAC TCAACTACAGATGCAGGAACGAAAGAGTTACTGGAATCAACAGTTGCTTCATTACAAATC GAAATCTTAGAATCCAAGGCCAAATGTACAGCCCTCGTTTCCCAGGCGAGCGGTGTGGAG GATCAGAAATGCGCCGAAGACATCAGGCAATTGAATGACAAGCTAGAGAGCATGCAATCC TTGGTGACAAAATTGAGAACTTTGATCTAA

Peptide Sequence

PEP ID	Os04t0628600-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:31982348:31992462:-1 gene:Os04g0628600 transcript:Os04t0628600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0628600-01)
Sequence	MESIIARALEYTLKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASLVLPPSLAVETAR VGKLQITLPSVSNVQVEPIVVNIDKLDLVLVEKDNSEDLSSTSSALSPSPAKNSGYGYAD KIADGMTVQVGIVNLLLETHGGPRHQGGATWSPPLAAITFRDLVLYTTNEKWQAVNLKEA RDFSNNKGFIYIFKKLEWQSLSVDLLPHPDMFTDARFNSSSSEDGKRDDDGAKRMFFGGE RFLEGISGEANITVKRTEQNNPVGLEVQLHITEALCPALSEPGLRAFLRFMTGVSVCLNR GDVDPKAQQLAEAAGSSLVSIIVDHIFLCIKDAEFQLEFLMQSLFFSRASVPDGGISRNL SCIKIAGLFLRDTFSRPPCTLIQPSMQSVPQEPPPVPDFGQNFCPQIHPFENQQLEFTSG IPLFSLYCLQLTPSPLPPKFASKTVITCEPLMVTLQEQSCLRIASFLADGVVANRSAILP DSSINSMSFYIKEFDLSIPLDAEEITRYSGTKNVCPQSSFMGARLHVENLYFCESPSEKC LLLNLDKDPACFLLWGYQPVDASQRKWATRASHLSLSLETSSTSNEQRTVRGSSPSLWKC VELDDIRFEAAMVTADGSPLLIVPPPEGVVRIGVAFQQFTTNTSVEQLFFVLGLYTYFGQ VGERISKVSKGNCSATKTSADKRERKLPSDTAVSLTMNSLQLNFLESLSSNDLQLPLVQF GGEDLYLKVSHRTLGGAFAVTTNLTWKTVSVNCLEGESAIFGENGTAVTGEPNILLHENG HPNMRAVFWVDHRNKNQSKEARFIDIDITHVMPYDMRDMECHSLSVSAKVSGVRLGGGMS YTESLLHRFGILGPDGGPGEGLLRTLKDLSSGPLAKLFSPSHLTDKEDGMPNSKDNDYNS KFDLEVPDDLDVSIELRNWLFALEGTEEVGDWLSPHGSDHISREEKCWHTTFTNLHVSGR SSDRPGSAEKVIHKRALPIERFTAGIEGLQAIKPCLRDQLIGNATSNNLQTGSVFDNTSS IGDQGVDVEATMVICEDEIEGPKWTMDNVKFSVKEPIEAVATKEELEHLTMLCRSEADAM GRITAGILRLLKLDKSLGQGTIEQLRNLGSGGIDNTFSPRKLSRQNSFGSIGTPRTPNLH STTDAGTKELLESTVASLQIEILESKAKCTALVSQASGVEDQKCAEDIRQLNDKLESMQS LVTKLRTLI

Transcript Sequence

Transcript ID	Os04t0628600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:31982348:31992462:-1 gene:Os04g0628600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0628600-01)
Sequence	GGCCCCACATTTTCTTTCACCTTCTCTTCCATTCCACCTCTCCATCTCGCCGGAATCTCA CCTCCGATCCGGCGGCGGCGCCGCCACCGACACCGAGAAGGGGCGTCCCCTCCCTCCGCC ACCGCGCGCGCGGCACGAAGAGCCACCGGAGCATTCAGGGGAGGGGCGTTGTAGAAGCGC GGGCGGGGGGAAGGCGGGGATGGAGTCGATCATAGCGCGGGCGCTGGAGTACACGCTCAA GTACTGGCTCAAGTCCTTCTCCCGCGACCAGTTCAAGCTGCAGGGCCGCACCGCGCAGCT CTCCAATCTCGATATCAATGGCGACGCGTTGCACGCGAGCCTGGTGCTGCCTCCGTCGCT CGCCGTCGAGACCGCGCGAGTCGGGAAGCTCCAGATCACGCTTCCATCAGTGTCAAATGT GCAAGTAGAACCAATTGTGGTGAACATTGATAAGCTTGACCTCGTTCTTGTTGAGAAGGA CAATTCTGAAGATCTTTCAAGCACTAGCAGTGCTTTATCGCCATCACCAGCTAAAAACAG CGGATATGGATATGCTGATAAGATTGCAGATGGAATGACAGTCCAAGTCGGTATTGTGAA CCTTCTATTAGAAACACATGGTGGTCCACGTCATCAAGGAGGCGCAACTTGGTCACCACC GCTAGCGGCTATCACATTTCGTGATCTTGTACTGTACACTACAAATGAAAAATGGCAGGC TGTAAATCTGAAAGAAGCAAGGGATTTTTCGAACAATAAAGGATTCATTTATATTTTTAA GAAATTGGAATGGCAATCACTGTCAGTTGATCTGTTACCTCATCCTGACATGTTCACGGA TGCTCGGTTTAACTCTTCTAGCAGTGAAGATGGAAAACGAGATGATGATGGTGCAAAACG AATGTTTTTTGGTGGTGAAAGATTTTTGGAAGGAATATCTGGGGAGGCCAACATCACAGT CAAACGAACAGAGCAAAACAATCCTGTTGGGCTTGAAGTTCAGCTGCATATTACTGAAGC TCTCTGTCCTGCCTTAAGTGAACCTGGTTTGCGGGCTTTTCTTCGGTTCATGACCGGGGT ATCTGTGTGCCTAAACAGGGGTGATGTGGATCCAAAAGCTCAACAGCTTGCAGAAGCTGC AGGATCTTCCTTGGTATCCATTATTGTAGATCATATATTCCTCTGCATTAAGGATGCTGA GTTTCAGCTTGAATTTCTGATGCAGTCTTTATTCTTCTCACGGGCAAGTGTTCCCGATGG GGGGATTTCAAGAAACTTGTCTTGCATAAAGATTGCCGGGCTCTTTCTGAGGGACACATT TTCTCGTCCACCATGCACATTGATACAGCCCTCTATGCAATCTGTTCCACAAGAACCTCC ACCTGTGCCTGACTTTGGTCAAAATTTTTGTCCTCAAATCCATCCATTTGAGAATCAGCA ATTGGAATTCACGTCAGGAATTCCTTTATTTTCCCTCTATTGTCTTCAGCTCACTCCTTC CCCATTACCTCCAAAGTTTGCTTCAAAAACTGTCATCACATGTGAACCTCTTATGGTAAC CCTCCAGGAGCAATCCTGCTTAAGAATTGCCTCATTCTTGGCTGATGGAGTTGTGGCCAA CCGCAGTGCCATATTGCCTGATTCTTCAATCAACAGTATGTCATTTTATATTAAAGAATT TGATCTCTCTATTCCATTAGATGCTGAGGAAATCACGAGGTACAGTGGAACTAAGAATGT TTGCCCGCAATCATCATTTATGGGGGCAAGACTTCATGTGGAAAATCTATACTTCTGCGA GTCACCATCAGAAAAGTGTCTGTTGCTAAACCTTGACAAAGATCCAGCTTGCTTCCTTCT CTGGGGGTACCAACCTGTTGATGCAAGTCAGAGGAAGTGGGCTACTCGAGCTTCTCATCT AAGCCTCTCACTTGAAACCTCTAGCACTTCGAATGAACAGAGAACAGTTAGGGGCTCCTC TCCAAGTTTGTGGAAATGTGTTGAGCTGGATGACATCCGGTTTGAGGCAGCTATGGTTAC AGCTGATGGTAGCCCTTTGTTGATTGTGCCACCCCCAGAGGGTGTTGTGAGGATTGGTGT TGCTTTTCAACAGTTTACAACCAATACTTCAGTAGAGCAGTTGTTTTTTGTGTTAGGTCT CTACACTTATTTTGGCCAGGTTGGAGAACGGATTTCAAAGGTTAGCAAAGGTAACTGCTC TGCGACAAAGACATCAGCTGACAAACGTGAGAGAAAACTGCCTAGTGACACAGCAGTGAG CTTAACTATGAATAGTCTCCAACTCAATTTCTTGGAATCTTTATCATCAAATGACTTACA ATTGCCCCTGGTTCAGTTTGGTGGTGAGGATCTGTACCTGAAAGTTTCTCATCGCACTCT TGGTGGTGCCTTTGCAGTTACAACTAACTTGACATGGAAAACTGTCTCAGTTAATTGTTT GGAAGGAGAAAGTGCTATATTTGGTGAGAATGGCACTGCAGTTACTGGTGAACCTAATAT TTTGTTGCATGAAAATGGGCATCCCAATATGAGAGCTGTGTTTTGGGTTGACCACCGGAA TAAGAACCAGTCTAAAGAAGCTCGATTTATTGACATAGACATCACTCACGTAATGCCTTA TGACATGCGGGACATGGAGTGCCATAGCTTGAGTGTATCAGCTAAGGTATCTGGTGTTCG TCTTGGTGGTGGAATGAGTTATACTGAATCTTTGCTGCATCGATTTGGTATCCTTGGGCC TGATGGTGGTCCAGGGGAAGGTCTCTTGAGGACTCTGAAAGATTTATCCTCTGGTCCACT TGCGAAACTATTCTCGCCATCTCACCTCACCGACAAGGAAGATGGAATGCCCAATTCCAA AGACAATGACTACAATTCGAAGTTTGACCTGGAGGTGCCAGATGATCTTGATGTGTCAAT TGAGCTACGAAACTGGCTCTTCGCCCTTGAAGGCACAGAAGAAGTAGGAGATTGGTTATC GCCTCATGGCAGTGATCATATCAGTAGAGAAGAGAAATGTTGGCATACCACATTCACGAA TCTACATGTGTCAGGCAGAAGTAGTGATCGGCCTGGATCTGCGGAGAAGGTGATTCACAA AAGGGCCCTTCCAATAGAACGTTTTACGGCTGGAATTGAAGGTTTACAGGCAATAAAACC TTGCCTGAGAGATCAACTAATTGGAAATGCAACATCAAATAATCTTCAAACAGGCAGTGT TTTTGATAACACAAGTAGCATTGGTGACCAAGGTGTCGATGTTGAAGCGACCATGGTCAT TTGCGAAGATGAGATTGAAGGTCCCAAGTGGACAATGGATAATGTCAAGTTTTCTGTAAA AGAACCGATTGAGGCAGTTGCAACAAAAGAAGAATTAGAGCATCTCACCATGCTTTGTAG ATCTGAAGCTGATGCAATGGGGAGGATCACTGCTGGAATTCTCCGTCTCCTTAAGCTTGA TAAGTCTCTTGGCCAGGGGACTATAGAACAACTCAGGAACCTAGGAAGCGGAGGAATCGA CAATACTTTTTCACCTAGGAAGTTGAGCAGGCAGAACAGTTTTGGCAGCATAGGTACTCC TAGGACTCCTAATCTGCACTCAACTACAGATGCAGGAACGAAAGAGTTACTGGAATCAAC AGTTGCTTCATTACAAATCGAAATCTTAGAATCCAAGGCCAAATGTACAGCCCTCGTTTC CCAGGCGAGCGGTGTGGAGGATCAGAAATGCGCCGAAGACATCAGGCAATTGAATGACAA GCTAGAGAGCATGCAATCCTTGGTGACAAAATTGAGAACTTTGATCTAAGTTGCACATAG TTTTTTGTGTATAGGTTCGTGCAGTCCAAAACTTGGAAGTGGCTAATGCTGTACTTCCTC TTCATTATTCTTTTTGTGTACATCTTTATGTTCCTTGGGGTGTATACAGGTGGATTCTGG AATAATGAGCTGACACGCAGCAAATATAAAATTTTGTAGCTGGAATGTCACATGTAGCAC TGTGTTCAAAACTTCAAGTGCAGTCATTAGGAATAACATTTTTGTCATCTGTATGTGACT CATGTAGTATCATATGCAAAGTTTTGCTGTTGTC