Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0628100-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:31962543:31965069:1 gene:Os04g0628100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE POLYUBIQUITIN description:Similar to Polyubiquitin. (Os04t0628100-01);Similar to Polyubiquitin. (Os04t0628100-02)
Sequence

ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTTCTCC
GATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG
CAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAAC
ATCCAGAAGGAGTCCACCTTGCACCTTGTCCTCCGCCTTCGTGGAGGCATGCAAATATTC
GTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCCGACACGATCGAT
AATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGCGTCTCATC
TTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCAAAAGGAA
TCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAAGACCCTT
ACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGTGAAGGCC
AAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGGCTCATCTTCGCTGGCAAG
CAGCTTGAGGACGGCCGCACCCTTGCTGACTATAACATCCAGAAGGAGTCCACCTTGCAC
TTGGTCCTCCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACC
ATCACCCTGGAGGTTGAGTCGTCTGACACGATCGACAATGTGAAGGCCAAGATCCAGGAC
AAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGAT
GGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGC
CTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAG
GTTGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATC
CCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTT
GCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCCGTGGTGGT
CTCTGA

Peptide Sequence

PEP ID

Os04t0628100-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:31962543:31965069:1 gene:Os04g0628100 transcript:Os04t0628100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE POLYUBIQUITIN description:Similar to Polyubiquitin. (Os04t0628100-01);Similar to Polyubiquitin. (Os04t0628100-02)
Sequence

MQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
ADYNIQKESTLHLVLRLRGGL

Transcript Sequence

Transcript ID

Os04t0628100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:31962543:31965069:1 gene:Os04g0628100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE POLYUBIQUITIN description:Similar to Polyubiquitin. (Os04t0628100-01);Similar to Polyubiquitin. (Os04t0628100-02)
Sequence

ATAGCGAGTCGAATCGACCGAAGGGGAGGGGGAGCGAAGCTTTGCGTTCTCTAATCGCCT
CGTCAAGATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGA
GTTCTCCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCC
GGACCAGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGA
TTATAACATCCAGAAGGAGTCCACCTTGCACCTTGTCCTCCGCCTTCGTGGAGGCATGCA
AATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCCGACAC
GATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGCG
TCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCA
AAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGGTATGCAGATCTTTGTGAA
GACCCTTACTGGCAAGACGATCACCTTGGAGGTTGAGTCCTCTGACACGATCGACAATGT
GAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGGCTCATCTTCGC
TGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCTGACTATAACATCCAGAAGGAGTCCAC
CTTGCACTTGGTCCTCCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACCGG
CAAGACCATCACCCTGGAGGTTGAGTCGTCTGACACGATCGACAATGTGAAGGCCAAGAT
CCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCT
TGAGGATGGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTGCACCTTGT
CCTGCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCAC
TCTGGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGA
GGGCATCCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCG
CACCCTTGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCCG
TGGTGGTCTCTGAGCGTGTGCTGTGGTGCAGCATTGGACTTCATTATACCTATGCCGCTC
GTCTGTCATATCATCGTGTCATGGTTGTGTTGTGTTCTGGTTTAGAGTCCCTAAGTTGTG
TTGATACTATTATCCATACTAGTACAATTTGCTTCACTGTGCATCGGTACCAATCGATGA
TATTATC