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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0626400-03
CDS Infomation

cds chromosome:IRGSP-1.0:4:31848493:31850790:-1 gene:Os04g0626400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0148A10.12 protein. (Os04t0626400-01);Similar to OSIGBa0148A10.12 protein. (Os04t0626400-02);Similar to OSIGBa0148A10.12 protein. (Os04t0626400-03)
Sequence

ATGGTTCTCGCTCTGCTGTTGGGCTCCTCCTCTTCTTCTCTTGCGGCGCCACACCCTGCT
TGCTCTTCCAGGAGAAAATGCAGACCCGCTGGACGAAATAATTTCAGATGCTCTCTGCAT
GACAAGGTGCCACTGAATGCTCATGGAGTATTATCCACAAAATTGCTCTCATGCCTTGCT
GCTTCGCTTGTTTTCATCTCTCCACCTTGTCAGGCTATCCCTGCAGAGACCTTTGTACAG
CCAAAATTGTGCCAGGTTGCTGTGGTAGCAGCCATCGACAAGGCTGCGGTTCCTCTGAAA
TTCGATAGCCCTTCTGATGATGGCGGCACAGGTTTGATGATGAAGGGTATGACTGCCAAG
AACTTTGACCCAATTCGCTACTCTGGTAGATGGTTCGAAGTAGCATCGCTGAAACGTGGC
TTTGCTGGTCAGGGACAAGAGGACTGTCACTGTACTCAGGGGGTGTATTCATTTGATGAG
AAATCACGCTCAATCCAGGTGGACACATTCTGTGTTCATGGTGGACCTGATGGTTACATC
ACCGGTATTCGGGGAAGGGTGCAATGCCTGTCCGAAGAGGACATGGCGAGTGCTGAGACA
GATCTTGAAAGGCAGGAGATGATCAAGGGGAAATGCTTTCTCCGTTTCCCCACACTACCA
TTCATACCCAAGGAACCTTATGATGTGCTTGCAACCGATTATGACAATTACGCCGTTGTG
TCTGGTGCTAAAGACACAAGCTTTATCCAGATATACTCAAGAACACCTAATCCTGGACCA
GAATTCATCGAGAAGTACAAGTCCTACGCTGCCAACTTCGGTTATGATCCGAGCAAGATC
AAGGACACCCCACAGGATTGCGAGGTGATGTCCACGGACCAGCTTGGTCTGATGATGTCA
ATGCCTGGGATGACTGAGGCTTTGACGAATCAGTTCCCAGACCTGAAGCTGAGTGCACCT
GTTGCATTCAACCCATTCACAAGTGTGTTTGACACCCTGAAGAAACTTGTAGAACTGTAC
TTCAAGTAA

Peptide Sequence

PEP ID

Os04t0626400-03
PEP Infomation

pep chromosome:IRGSP-1.0:4:31848493:31850790:-1 gene:Os04g0626400 transcript:Os04t0626400-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0148A10.12 protein. (Os04t0626400-01);Similar to OSIGBa0148A10.12 protein. (Os04t0626400-02);Similar to OSIGBa0148A10.12 protein. (Os04t0626400-03)
Sequence

MVLALLLGSSSSSLAAPHPACSSRRKCRPAGRNNFRCSLHDKVPLNAHGVLSTKLLSCLA
ASLVFISPPCQAIPAETFVQPKLCQVAVVAAIDKAAVPLKFDSPSDDGGTGLMMKGMTAK
NFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYSFDEKSRSIQVDTFCVHGGPDGYI
TGIRGRVQCLSEEDMASAETDLERQEMIKGKCFLRFPTLPFIPKEPYDVLATDYDNYAVV
SGAKDTSFIQIYSRTPNPGPEFIEKYKSYAANFGYDPSKIKDTPQDCEVMSTDQLGLMMS
MPGMTEALTNQFPDLKLSAPVAFNPFTSVFDTLKKLVELYFK

Transcript Sequence

Transcript ID

Os04t0626400-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:31848493:31850790:-1 gene:Os04g0626400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0148A10.12 protein. (Os04t0626400-01);Similar to OSIGBa0148A10.12 protein. (Os04t0626400-02);Similar to OSIGBa0148A10.12 protein. (Os04t0626400-03)
Sequence

GGTTTACTCGGCCTAAGACAGTGGGAGACGACGGCGACGGCGGCGGCGGGAGGAAGCCAT
GGTTCTCGCTCTGCTGTTGGGCTCCTCCTCTTCTTCTCTTGCGGCGCCACACCCTGCTTG
CTCTTCCAGGAGAAAATGCAGACCCGCTGGACGAAATAATTTCAGATGCTCTCTGCATGA
CAAGGTGCCACTGAATGCTCATGGAGTATTATCCACAAAATTGCTCTCATGCCTTGCTGC
TTCGCTTGTTTTCATCTCTCCACCTTGTCAGGCTATCCCTGCAGAGACCTTTGTACAGCC
AAAATTGTGCCAGGTTGCTGTGGTAGCAGCCATCGACAAGGCTGCGGTTCCTCTGAAATT
CGATAGCCCTTCTGATGATGGCGGCACAGGTTTGATGATGAAGGGTATGACTGCCAAGAA
CTTTGACCCAATTCGCTACTCTGGTAGATGGTTCGAAGTAGCATCGCTGAAACGTGGCTT
TGCTGGTCAGGGACAAGAGGACTGTCACTGTACTCAGGGGGTGTATTCATTTGATGAGAA
ATCACGCTCAATCCAGGTGGACACATTCTGTGTTCATGGTGGACCTGATGGTTACATCAC
CGGTATTCGGGGAAGGGTGCAATGCCTGTCCGAAGAGGACATGGCGAGTGCTGAGACAGA
TCTTGAAAGGCAGGAGATGATCAAGGGGAAATGCTTTCTCCGTTTCCCCACACTACCATT
CATACCCAAGGAACCTTATGATGTGCTTGCAACCGATTATGACAATTACGCCGTTGTGTC
TGGTGCTAAAGACACAAGCTTTATCCAGATATACTCAAGAACACCTAATCCTGGACCAGA
ATTCATCGAGAAGTACAAGTCCTACGCTGCCAACTTCGGTTATGATCCGAGCAAGATCAA
GGACACCCCACAGGATTGCGAGGTGATGTCCACGGACCAGCTTGGTCTGATGATGTCAAT
GCCTGGGATGACTGAGGCTTTGACGAATCAGTTCCCAGACCTGAAGCTGAGTGCACCTGT
TGCATTCAACCCATTCACAAGTGTGTTTGACACCCTGAAGAAACTTGTAGAACTGTACTT
CAAGTAAACTCCATATTGTAAAACTTGTGATCAATGTTCCCTCCACATGAAGATGCAGTT
GAATAAAATTCTCACACACAGATGTCTCTAGTG