Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0624500-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:31749141:31751604:1 gene:Os04g0624500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BLACK HULL C description:Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment). (Os04t0624500-01)
Sequence	ATGGAGAGCATCAACGTAGCACCAGGAACAACCGCTACGCCTCGCATGGCGCCGCCGCCG CCGCCGCCGTGCATCACCAACCTCCAGAGTACCCTTCGCTACAACAACCTGCTCTTGCAC CGCAAGACGAAGGGGTGGAAGCCGCGGAACGTGTCCTGCAGGGTCGACCGCCGCGACGTG CTCCTCGGCATCAGCGGCGCGGCCGCCATGGTGGCCACGCAGGGCGGCGGCGGCGCGCTC GCGGCGCCCATCCAGGCCCCGGACCTCGGCGACTGCCACCAGCCCGTGGACGTCCCCGCC ACGGCGCCGGCGATCAACTGCTGCCCGACGTACAGCGCCGGCACCGTCGCCGTCGACTTC GCGCCGCCGCCGGCGTCCTCGCCGCTCCGCGTGCGGCCGGCGGCTCACCTGGCGGACAGG GCGTACCTGGCCAAGTACGAGAGGGCCGTGTCGCTCATGAAGAAGCTCCCCGCCGACGAC CCCCGCAGCTTCGAGCAGCAGTGGCGCGTCCACTGCGCCTACTGCGACGGCGCGTACGAC CAGGTCGGCTTCCCCGGCTTGGAGATCCAGATACACAGCTGCTGGCTCTTCTTCCCATGG CACAGGATGTACCTGTACTTCCATGAGAGGATACTGGGCAAGCTGATCGGCGACGAGACG TTCGCGCTGCCGTTCTGGAACTGGGACGCGCCGGACGGCATGTCGTTCCCCGCGATGTAC GCCAACAGGTGGTCGCCGCTGTACGACCCGCGGCGCAACCAGGCTCACCTGCCACCGTTC CCGCTCGACCTCGACTACAGTGGAACCGACACGAACATCCCGAAAGACCAGCTGATCGAT CAGAACCTCAACATCATGTACCGCCAGATGATTTCGGGAGCTAGGAAGGCGGAGCTGTTC ATGGGGCAGCCGTACCGCGCCGGCGACCAGCCGGAGCCGGGGGCGGGCACCGTCGAGAGC GTGCCGCACAACCCCGTCCACAGATGGACCGGCGACCCGAGGCAGCCGAACGGCGAGGAC ATGGGCATCTTCTACTCGGCGGCGCGCGACCCGGTGTTCTTCGCGCACCACGGCAACGTC GACCGCATGTGGCACATCCGCCGCGGCCTCCTCTTCCCCGGCGACACCGACTTCACCGAC CCCGACTGGCTCGACGCCAGCTTCTTCTTCTACGACGAGGAGGCCCGCCTCGTCCGCGTC CGCGTCCGCGACACCCTCGACCCGTCGGCGCTGCGCTTCACGTACCAGGACGTGGGTCTC CCGTGGCTGAACGCCAAGCCGTCCACGGGAGCAGCCAGCACGCCGGCGCCCGCGGCCGGC GCGTTCCCGGCGACCCTGGACAAGACCGTGCGGGTGGCCGTGACGAGGCCCAGGGCGTCG AGGAGCCGCGAGGAGAAGGAGGAGGAGGAGGAGGTCGAGATCCCCGACCACTCCACGTAC GTCAAGTTCGACGTGTTCGTGAACGCGCCCGAGAGCGGGGACGGCGCGGCGACGTGCGCG GCGACGTGCGCCGGCAGCGTCGCGCTGGCGCCGCACGGGATCCACCGCGAGGGGCAGCTG TCGCCGAGGAAGACGGAGGCGAGGTTCGGCATATGCGACTTGCTGGACGACATCGGCGCC GACGGCGACAAGACGATCGTCGTGTCGATCGTGCCGAGGTGTGGCTGCGATTCGGTCACC GTCGCCGGCGTCAGCATCGGCTACGCTAAGTGA

Peptide Sequence

PEP ID	Os04t0624500-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:31749141:31751604:1 gene:Os04g0624500 transcript:Os04t0624500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BLACK HULL C description:Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment). (Os04t0624500-01)
Sequence	MESINVAPGTTATPRMAPPPPPPCITNLQSTLRYNNLLLHRKTKGWKPRNVSCRVDRRDV LLGISGAAAMVATQGGGGALAAPIQAPDLGDCHQPVDVPATAPAINCCPTYSAGTVAVDF APPPASSPLRVRPAAHLADRAYLAKYERAVSLMKKLPADDPRSFEQQWRVHCAYCDGAYD QVGFPGLEIQIHSCWLFFPWHRMYLYFHERILGKLIGDETFALPFWNWDAPDGMSFPAMY ANRWSPLYDPRRNQAHLPPFPLDLDYSGTDTNIPKDQLIDQNLNIMYRQMISGARKAELF MGQPYRAGDQPEPGAGTVESVPHNPVHRWTGDPRQPNGEDMGIFYSAARDPVFFAHHGNV DRMWHIRRGLLFPGDTDFTDPDWLDASFFFYDEEARLVRVRVRDTLDPSALRFTYQDVGL PWLNAKPSTGAASTPAPAAGAFPATLDKTVRVAVTRPRASRSREEKEEEEEVEIPDHSTY VKFDVFVNAPESGDGAATCAATCAGSVALAPHGIHREGQLSPRKTEARFGICDLLDDIGA DGDKTIVVSIVPRCGCDSVTVAGVSIGYAK

Transcript Sequence

Transcript ID	Os04t0624500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:31749141:31751604:1 gene:Os04g0624500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BLACK HULL C description:Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment). (Os04t0624500-01)
Sequence	ACAGCGCAGTGCCGCCATGGAGAGCATCAACGTAGCACCAGGAACAACCGCTACGCCTCG CATGGCGCCGCCGCCGCCGCCGCCGTGCATCACCAACCTCCAGAGTACCCTTCGCTACAA CAACCTGCTCTTGCACCGCAAGACGAAGGGGTGGAAGCCGCGGAACGTGTCCTGCAGGGT CGACCGCCGCGACGTGCTCCTCGGCATCAGCGGCGCGGCCGCCATGGTGGCCACGCAGGG CGGCGGCGGCGCGCTCGCGGCGCCCATCCAGGCCCCGGACCTCGGCGACTGCCACCAGCC CGTGGACGTCCCCGCCACGGCGCCGGCGATCAACTGCTGCCCGACGTACAGCGCCGGCAC CGTCGCCGTCGACTTCGCGCCGCCGCCGGCGTCCTCGCCGCTCCGCGTGCGGCCGGCGGC TCACCTGGCGGACAGGGCGTACCTGGCCAAGTACGAGAGGGCCGTGTCGCTCATGAAGAA GCTCCCCGCCGACGACCCCCGCAGCTTCGAGCAGCAGTGGCGCGTCCACTGCGCCTACTG CGACGGCGCGTACGACCAGGTCGGCTTCCCCGGCTTGGAGATCCAGATACACAGCTGCTG GCTCTTCTTCCCATGGCACAGGATGTACCTGTACTTCCATGAGAGGATACTGGGCAAGCT GATCGGCGACGAGACGTTCGCGCTGCCGTTCTGGAACTGGGACGCGCCGGACGGCATGTC GTTCCCCGCGATGTACGCCAACAGGTGGTCGCCGCTGTACGACCCGCGGCGCAACCAGGC TCACCTGCCACCGTTCCCGCTCGACCTCGACTACAGTGGAACCGACACGAACATCCCGAA AGACCAGCTGATCGATCAGAACCTCAACATCATGTACCGCCAGATGATTTCGGGAGCTAG GAAGGCGGAGCTGTTCATGGGGCAGCCGTACCGCGCCGGCGACCAGCCGGAGCCGGGGGC GGGCACCGTCGAGAGCGTGCCGCACAACCCCGTCCACAGATGGACCGGCGACCCGAGGCA GCCGAACGGCGAGGACATGGGCATCTTCTACTCGGCGGCGCGCGACCCGGTGTTCTTCGC GCACCACGGCAACGTCGACCGCATGTGGCACATCCGCCGCGGCCTCCTCTTCCCCGGCGA CACCGACTTCACCGACCCCGACTGGCTCGACGCCAGCTTCTTCTTCTACGACGAGGAGGC CCGCCTCGTCCGCGTCCGCGTCCGCGACACCCTCGACCCGTCGGCGCTGCGCTTCACGTA CCAGGACGTGGGTCTCCCGTGGCTGAACGCCAAGCCGTCCACGGGAGCAGCCAGCACGCC GGCGCCCGCGGCCGGCGCGTTCCCGGCGACCCTGGACAAGACCGTGCGGGTGGCCGTGAC GAGGCCCAGGGCGTCGAGGAGCCGCGAGGAGAAGGAGGAGGAGGAGGAGGTCGAGATCCC CGACCACTCCACGTACGTCAAGTTCGACGTGTTCGTGAACGCGCCCGAGAGCGGGGACGG CGCGGCGACGTGCGCGGCGACGTGCGCCGGCAGCGTCGCGCTGGCGCCGCACGGGATCCA CCGCGAGGGGCAGCTGTCGCCGAGGAAGACGGAGGCGAGGTTCGGCATATGCGACTTGCT GGACGACATCGGCGCCGACGGCGACAAGACGATCGTCGTGTCGATCGTGCCGAGGTGTGG CTGCGATTCGGTCACCGTCGCCGGCGTCAGCATCGGCTACGCTAAGTGAAGCACAACGTG AACCGTGGACGTATATTTATCATCTATACATGTGAACCCAGATGGAGAGACGGATTTGTG TTTGATATGTGTGTGACTAATGATTGTATACAAAATAATGCCAGTAATATAATGAGCATG GATGATATTGGCTT