Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0620400-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:31531978:31541045:1 gene:Os04g0620400 gene_biotype:protein_coding transcript_biotype:protein_coding description:SIT4 phosphatase-associated protein family protein. (Os04t0620400-01)
Sequence	ATGTTTTGGCACGTACCTGGAATCTCTGCTGCATCACCGGTGGATACTATTTTAGACAAG GAAAATTTCAAGTTGGAGGACCTTCTTGATGAGGATGAAATAATCCAGGAGTGCAAAGCA CTAAACACCCGCCTAATCAATTTTCTGCGGGACAAAGTTCAAGTGGAGCAATTACTCCAC TACATTGTCGAAGAGGCACCTGAAGATGCTGAAAAGAAGAGGATATTTCGATTTCCTTTT GTAGCTTGTGAAATATTTACATGTGAAGTGGATGTCATAATGAAGACATTAGTGGAGAAT GAAGATCTCATGGACTTGCTTTTCTCCTACTTAAAACCTGACCGACCTCATGGGACACTG TTGGCTGGTTACTTTTGTAAGGTCGTGATTTGCTTGATGCTGAGGAAGACTCTCCCATTC GTCAATTATGTGCAGGGCCATCCTGAAATAGTTAGCCAACTTGTTGACCTTATTGGTATA ACTTCTATAATGGAGGTGTTGATCCGCTTGATCGGTGCTGATGAAACTATGTATTCTGGT TATGTTGACTCAATGCAATGGTTGGATGACATAAAGGTCCTTGAGATGATTGTTGACAAG TTCAGTTCATCTGATTCTCCTGAGGTTCATGCAAACGCTGCTGAAATCCTTTGTGCGATA ACTAGATATGCCCCACCAGCGCTTGCTACAAAAATATCCAGTGCAAGTTTTGTGGCGAGA CTATTTCACCATGCTTTTGAAGATTCAAGGCCTAAATCGGTGTTGGTCCACTCATTGTCA GTGTGCATATCTTTGTTGGATCCTAAGAGACTTGTATTAGCTTCCTACCAAGTTTTCCGT AGTCAACTAAGCCATGCAACATTGGTCACTGCAAGTCCAGAGACAGTTGGTGGCATGCTG GATAGCCTAGGTGATTTGTTGAAGCTGCTGGATGTTTCATCTGCTGAAAATGTTCTGCCA ACGACATATGGAGTCTTACAACCTCCTCTAGGAAAGCAACGCTTGAAGATTGTAGAGTTC ATCTCCGTCCTGCTCTCAATTGGAAGTGAAGCTGCTGAAATTCGATTGATCCATCTAGGA GCAATCAAGCGTGTCATAGATCTATTTTTTGAGTACCCTTTTAACAACTTTTTGCACCAC CATGTGGAGAGCATCATCAGTTCTTGTTTAGATAGTAAGCAGGATCAGCTGATCTGTCAT GTTCTTGATGAGTGTAAGCTTGTTACAAGAATTTTGGAAGCTGAGAAGAACTCTGCTCTA TCAATAGATTTAACTAAGCACACGGTTCCTTTGGAGGGGAGATTTACACCAAGGATCGGA CTTGTTGGTCATATGACACGCATATCTAACAAACTCATTCAGCTGGCTAAGACCAACAGC ATAATTCAATCACATTTGCAGCAAAATTCTGGGTGGGCTGAGTGGCATGCTGGAACCCTA ACTAGGTGTAACGCAGTAGAAAATGTTTACCAGTGGGCTTGTGGCCGGCCAACAACACTG CAGGATCGAGGTAGGGACAGTGATGAAGAAGACTTTCGAGATAGGGACTACGATGTTGCT GCGCTTGCTAGCAATTTGAGTCAGGCATCTAAATATGGTATTTACAGTTATGAAGATATT GATGAGGATCAAGTACCACATGAGCGAGATGATGAGGACGTATATTTTGACGATGAATCT GCTGAAGTGGTTATTTCCTCTCTTCGTCTTGGTGATGAACATGACAGCAACTCCTTGTTT ACAAATTCCAATTGGTTTGCATTTGGTGAGGATAAAGCACTGAACGGCGAGGTCAACCCA GAAGCTTCCCCATCCCCAAATTCAGAGATATCTTCTCCAAATGTTGATGATGAGAATGAT GAAGTCATTCTTACTGAGGTTACAGATGGCAGAAAGGGTTCAGAGTCACTTTTAGCAGTC GACTTGAATGAAGAATCTAGTCACACAGGCTTGACAAATGTCTCCATTGATAAATTGGAA GATG

Peptide Sequence

PEP ID	Os04t0620400-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:31531978:31541045:1 gene:Os04g0620400 transcript:Os04t0620400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:SIT4 phosphatase-associated protein family protein. (Os04t0620400-01)
Sequence	MFWHVPGISAASPVDTILDKENFKLEDLLDEDEIIQECKALNTRLINFLRDKVQVEQLLH YIVEEAPEDAEKKRIFRFPFVACEIFTCEVDVIMKTLVENEDLMDLLFSYLKPDRPHGTL LAGYFCKVVICLMLRKTLPFVNYVQGHPEIVSQLVDLIGITSIMEVLIRLIGADETMYSG YVDSMQWLDDIKVLEMIVDKFSSSDSPEVHANAAEILCAITRYAPPALATKISSASFVAR LFHHAFEDSRPKSVLVHSLSVCISLLDPKRLVLASYQVFRSQLSHATLVTASPETVGGML DSLGDLLKLLDVSSAENVLPTTYGVLQPPLGKQRLKIVEFISVLLSIGSEAAEIRLIHLG AIKRVIDLFFEYPFNNFLHHHVESIISSCLDSKQDQLICHVLDECKLVTRILEAEKNSAL SIDLTKHTVPLEGRFTPRIGLVGHMTRISNKLIQLAKTNSIIQSHLQQNSGWAEWHAGTL TRCNAVENVYQWACGRPTTLQDRGRDSDEEDFRDRDYDVAALASNLSQASKYGIYSYEDI DEDQVPHERDDEDVYFDDESAEVVISSLRLGDEHDSNSLFTNSNWFAFGEDKALNGEVNP EASPSPNSEISSPNVDDENDEVILTEVTDGRKGSESLLAVDLNEESSHTGLTNVSIDKLE D

Transcript Sequence

Transcript ID	Os04t0620400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:31531978:31541045:1 gene:Os04g0620400 gene_biotype:protein_coding transcript_biotype:protein_coding description:SIT4 phosphatase-associated protein family protein. (Os04t0620400-01)
Sequence	GCTCTCGCCCTCCTCCTCCTCATCTCATCTCGCGATTGGTGAAATTCTAGGGTTGTGCGG ATTTGCTCCCCCGGGCCAACCGGATCCAGGTCGACGAGCGCGCGCGCGCGAGGGGTCTTC AAAAGCGCTCTTCGGGATCGCGTTCGCGTGAGCGCCAGCTATACACTCACTCCGCCGCCG CGACGAACGACTTGGGGCTTCTCCGTTGGCTACTGCTATTGCAGGGTCTAGTCTGAAGTC TGAACATAAATGATGAATCTTCTCAGAATGTGGAAGTTTGAGCTCTAAATCCACTTGGTT TGTGAGGTGTTAAGAGCACTGGACAGTGATAGTTGTTACTGTGCAAAATGTTTTGGCACG TACCTGGAATCTCTGCTGCATCACCGGTGGATACTATTTTAGACAAGGAAAATTTCAAGT TGGAGGACCTTCTTGATGAGGATGAAATAATCCAGGAGTGCAAAGCACTAAACACCCGCC TAATCAATTTTCTGCGGGACAAAGTTCAAGTGGAGCAATTACTCCACTACATTGTCGAAG AGGCACCTGAAGATGCTGAAAAGAAGAGGATATTTCGATTTCCTTTTGTAGCTTGTGAAA TATTTACATGTGAAGTGGATGTCATAATGAAGACATTAGTGGAGAATGAAGATCTCATGG ACTTGCTTTTCTCCTACTTAAAACCTGACCGACCTCATGGGACACTGTTGGCTGGTTACT TTTGTAAGGTCGTGATTTGCTTGATGCTGAGGAAGACTCTCCCATTCGTCAATTATGTGC AGGGCCATCCTGAAATAGTTAGCCAACTTGTTGACCTTATTGGTATAACTTCTATAATGG AGGTGTTGATCCGCTTGATCGGTGCTGATGAAACTATGTATTCTGGTTATGTTGACTCAA TGCAATGGTTGGATGACATAAAGGTCCTTGAGATGATTGTTGACAAGTTCAGTTCATCTG ATTCTCCTGAGGTTCATGCAAACGCTGCTGAAATCCTTTGTGCGATAACTAGATATGCCC CACCAGCGCTTGCTACAAAAATATCCAGTGCAAGTTTTGTGGCGAGACTATTTCACCATG CTTTTGAAGATTCAAGGCCTAAATCGGTGTTGGTCCACTCATTGTCAGTGTGCATATCTT TGTTGGATCCTAAGAGACTTGTATTAGCTTCCTACCAAGTTTTCCGTAGTCAACTAAGCC ATGCAACATTGGTCACTGCAAGTCCAGAGACAGTTGGTGGCATGCTGGATAGCCTAGGTG ATTTGTTGAAGCTGCTGGATGTTTCATCTGCTGAAAATGTTCTGCCAACGACATATGGAG TCTTACAACCTCCTCTAGGAAAGCAACGCTTGAAGATTGTAGAGTTCATCTCCGTCCTGC TCTCAATTGGAAGTGAAGCTGCTGAAATTCGATTGATCCATCTAGGAGCAATCAAGCGTG TCATAGATCTATTTTTTGAGTACCCTTTTAACAACTTTTTGCACCACCATGTGGAGAGCA TCATCAGTTCTTGTTTAGATAGTAAGCAGGATCAGCTGATCTGTCATGTTCTTGATGAGT GTAAGCTTGTTACAAGAATTTTGGAAGCTGAGAAGAACTCTGCTCTATCAATAGATTTAA CTAAGCACACGGTTCCTTTGGAGGGGAGATTTACACCAAGGATCGGACTTGTTGGTCATA TGACACGCATATCTAACAAACTCATTCAGCTGGCTAAGACCAACAGCATAATTCAATCAC ATTTGCAGCAAAATTCTGGGTGGGCTGAGTGGCATGCTGGAACCCTAACTAGGTGTAACG CAGTAGAAAATGTTTACCAGTGGGCTTGTGGCCGGCCAACAACACTGCAGGATCGAGGTA GGGACAGTGATGAAGAAGACTTTCGAGATAGGGACTACGATGTTGCTGCGCTTGCTAGCA ATTTGAGTCAGGCATCTAAATATGGTATTTACAGTTATGAAGATATTGATGAGGATCAAG TACCACATGAGCGAGATGATGAGGACGTATATTTTGACGATGAATCTGCTGAAGTGGTTA TTTCCTCTCTTCGTCTTGGTGATGAACATGACAGCAACTCCTTGTTTACAAATTCCAATT GGTTTGCATTTGGTGAGGATAAAGCACTGAACGGCGAGGTCAACCCAGAAGCTTCCCCAT CCCCAAATTCAGAGATATCTTCTCCAAATGTTGATGATGAGAATGATGAAGTCATTCTTA CTGAGGTTACAGATGGCAGAAAGGGTTCAGAGTCACTTTTAGCAGTCGACTTGAATGAAG AATCTAGTCACACAGGCTTGACAAATGTCTCCATTGATAAATTGGAAGATG