Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0617600-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:31364111:31369399:-1 gene:Os04g0617600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cdc48 cell division control protein 48, AAA family. (Os04t0617600-01)
Sequence	ATGGTGGAGGCGACGCGGCAGCGGAGGAAGCCGCTGGTGCTGGCCTCCACGCAGGCGCTG CTCGACTCGCTGCCGGGGGACCGCCGCGGGTCGGCCCTTCCGCCGCCGCCGCCGCCGGAG CCGGTGCGCATCAGGGCCGGGGTGCTCCGCTTCCCCAACTCCTCCTCCTCCTCGTCTTCC GCGGGCGGAGGCGAGTTCGGGGAGGCCGCCTCCTTCGTCGCCCTCCCCTCGTCCGCGCTC CGCCGGCTCGCCGTCGTCACCGGCACGCCGGTGCTTGTGAAGAATGCTGACAATAATGTC GGAAGGATTGCCAAAGCAGTAGTACTTGATCACCCATGCCTTGATGATTCCCTGACAGAA CATACTGAGCCTGTGGACGCAGCCTCTCCCTTGGATAATGCCATGGGTATCTTACCCTGT CGCTCTTTTCCAACAAACGGCTTTCCGCCCTTGGATGAAGAGGTCGCTTATGTTAGCCCA CTTCTGGCATTCAATCTGGGAGTCCATGTCTCTTGTCTCAAGCTTCTTGTTCAAAAAGGA GAGAAACCTTTCAAGTTCTGTTCTAAAGTTGAAGATAGTGATCTGGCTGCTGGTGAAGAA AGTAATCCTATTCTTCACTTAGAGATTCTTCCATCCCCTCAAGTGCCGAAACATGCTTTG CATTTGCGGGTTTCTGTTGTGAGGATTCCTGAATGTGGTGTGTTTGCTTCTCTAAAGGCA AATTCAGCCATTGGAGGAAGTGACTACCAAGATATGATTGATCAAGCTCTGAATGAGCAC TTTAAGTTTGATAGGTTCCTAGCGAGAGGGGATGTTTTTTGCATAAGGAACAATTGGAAT TGTGGCGCAACCTCCTGCCTTGCATGCAACAGGGAGGACAATAGACTCCATCCTCATGAT ATGATTTACTTCAAGGTGACTGGCATGGAACCATCAGATGAACCAGTTCATCGCGTCAAC TGTAATCAAACAGCCCTTGTTCTTGGGGGAGGTGCTTCTGCTTCAATACCCCCTTACAGT TTGTTTGCTTCTCCTGGTGCTTCAGTTCCTTTGCACAGTGAAATAGTGGAGCATTTAGCA TCTATCATTGCACCAGCACTATGTCCTTCAAACATTTTGCCAAAAGTCAAGTTTTCCACT TTCTTATACGGGCCTTCAGGATGTGGGAAGCGGACGGTAGTCAAGCATGTTGCCAACCAT TTTGGTTTGCATGTGGTTGAGTGTAGCTGTCATGATCTAATGACTTCATCAGATAGCGGG GCACCAGCTGCACTTGTGGCTGCCTTCAAAGAAGCTCATAAGTATTCACCATGTATAATA CTTCTTCGCCACTTTGATGCTATTGGGAATACATCCTCCAACGAAGGGACACAATCTGCG CAATCTGGCACTGCAGCAAACATTGAATCCGTCATCAAGCAGTACATTGGACAACATTGG GTTGCTACGGAATCGCTCCCAGCAAGAGATATAAATGGAAATCCATACCTTGTGGAACCT GAATGTGTAAGCCCACTTCAAGTTATACTAGTTGCAACTGCAGATCGTGCTGAAGGAATG CCACAATCAATTAGGCGATGTTTCCGCCATGAGATAAACATGAAAAGTATAAATGAAGAA CAGAGGAGGAACTTGATATCTGAAACACTCCATTGTGTTTCAACGTCAGCTGATGAGAGT ATAAATGACAAGTTCGTAAAAGATTTAGCAGTACAAACGTCTGGTTTCATGCCAAGGGAT ATACTTGCATTGGTTGCAGATGCTGGCATATCTTTTGCACATAAAGTTGAAACGGATAAA AATAATAGCGAAGGTGATAAGCTTAAAGGCATCCTTCCTACAAGCTCTTCTAGCTCTCAA AATGAAGAAAAAACTTTTTGCAAAGAATATATTTTGTCTTCTCTAGAACGGGCCAAGAAA AGGAATCGTGCTGCACTGGGTACACCCAAAGTTCCTAATGTCAAATGGGAGGACGTTGGT GGTCTTGAGGAAGTGAAAAAGGTTATTCTAGATACTATTCAGTTACCTCTGTTGTATAAG CACCTTTTTTCTTCTAAATTGGGGAAGCGGTCAGGTGTCCTGTTGTATGGACCTCCTGGC ACAGGGAAGACATTATTGGCAAAAGCTGTAGCAACAGAGTGCTCTTTAAACTTTCTTAGT GTAAAAGGTCCAGAATTGATTAACATGTATGTTGGAGAATCGGAGAAGAATGTAAGGGAC ATTTTTGAGAAGGCAAGATCTGCACGGCCATGTGTAATTTTCTTTGATGAGCTTGATTCC CTTGCTCCTGCACGAGGATCCTCCTCAGATTCCGCAGGTGTGATGGATAGAGTAGTTTCA CAGTTGCTTGTGGAGATTGATGGGTTAAGCGATAACAGTCAGGATCTTTTCATTATTGGA GCTACAAATAGGCCTGACCTTCTTGATTCTGCACTTCTCCGGCCTGGCCGCTTTGATAAG CTTCTCTATGTTGGTGTAAATTCAGATGCATCATATAGAGAAAGGATCCTGAAAGCACAG ACACGCAAGTATAAGCTCCATGAGAATGTTTCTCTCTTGTCAATTGCTCAGCAATGTCCT CCAAACTTTACCGGTGCTGATATTTATGCGTTATGCGCAGACGCATGGTATCATGCTGCT AAGAACTTGGCCAAAACACTTGAGGCTGATCCTTCAAGAACCAGTGAAGCCAGTGCTGAT GACGTCATTGTTGAGATAAATGATTTCATGACAGTGTTAGGGGATATCACACCATCGTTG TCTATAGAAGAATTACAAAACTATGAACAGTTGAGGAAGAAGATTGAGGGACCATCTAGA TGA

Peptide Sequence

PEP ID	Os04t0617600-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:31364111:31369399:-1 gene:Os04g0617600 transcript:Os04t0617600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cdc48 cell division control protein 48, AAA family. (Os04t0617600-01)
Sequence	MVEATRQRRKPLVLASTQALLDSLPGDRRGSALPPPPPPEPVRIRAGVLRFPNSSSSSSS AGGGEFGEAASFVALPSSALRRLAVVTGTPVLVKNADNNVGRIAKAVVLDHPCLDDSLTE HTEPVDAASPLDNAMGILPCRSFPTNGFPPLDEEVAYVSPLLAFNLGVHVSCLKLLVQKG EKPFKFCSKVEDSDLAAGEESNPILHLEILPSPQVPKHALHLRVSVVRIPECGVFASLKA NSAIGGSDYQDMIDQALNEHFKFDRFLARGDVFCIRNNWNCGATSCLACNREDNRLHPHD MIYFKVTGMEPSDEPVHRVNCNQTALVLGGGASASIPPYSLFASPGASVPLHSEIVEHLA SIIAPALCPSNILPKVKFSTFLYGPSGCGKRTVVKHVANHFGLHVVECSCHDLMTSSDSG APAALVAAFKEAHKYSPCIILLRHFDAIGNTSSNEGTQSAQSGTAANIESVIKQYIGQHW VATESLPARDINGNPYLVEPECVSPLQVILVATADRAEGMPQSIRRCFRHEINMKSINEE QRRNLISETLHCVSTSADESINDKFVKDLAVQTSGFMPRDILALVADAGISFAHKVETDK NNSEGDKLKGILPTSSSSSQNEEKTFCKEYILSSLERAKKRNRAALGTPKVPNVKWEDVG GLEEVKKVILDTIQLPLLYKHLFSSKLGKRSGVLLYGPPGTGKTLLAKAVATECSLNFLS VKGPELINMYVGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGSSSDSAGVMDRVVS QLLVEIDGLSDNSQDLFIIGATNRPDLLDSALLRPGRFDKLLYVGVNSDASYRERILKAQ TRKYKLHENVSLLSIAQQCPPNFTGADIYALCADAWYHAAKNLAKTLEADPSRTSEASAD DVIVEINDFMTVLGDITPSLSIEELQNYEQLRKKIEGPSR

Transcript Sequence

Transcript ID	Os04t0617600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:31364111:31369399:-1 gene:Os04g0617600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cdc48 cell division control protein 48, AAA family. (Os04t0617600-01)
Sequence	CTCTCTCTCTCGCGCGCGCGTCGCAGCCATGGTGGAGGCGACGCGGCAGCGGAGGAAGCC GCTGGTGCTGGCCTCCACGCAGGCGCTGCTCGACTCGCTGCCGGGGGACCGCCGCGGGTC GGCCCTTCCGCCGCCGCCGCCGCCGGAGCCGGTGCGCATCAGGGCCGGGGTGCTCCGCTT CCCCAACTCCTCCTCCTCCTCGTCTTCCGCGGGCGGAGGCGAGTTCGGGGAGGCCGCCTC CTTCGTCGCCCTCCCCTCGTCCGCGCTCCGCCGGCTCGCCGTCGTCACCGGCACGCCGGT GCTTGTGAAGAATGCTGACAATAATGTCGGAAGGATTGCCAAAGCAGTAGTACTTGATCA CCCATGCCTTGATGATTCCCTGACAGAACATACTGAGCCTGTGGACGCAGCCTCTCCCTT GGATAATGCCATGGGTATCTTACCCTGTCGCTCTTTTCCAACAAACGGCTTTCCGCCCTT GGATGAAGAGGTCGCTTATGTTAGCCCACTTCTGGCATTCAATCTGGGAGTCCATGTCTC TTGTCTCAAGCTTCTTGTTCAAAAAGGAGAGAAACCTTTCAAGTTCTGTTCTAAAGTTGA AGATAGTGATCTGGCTGCTGGTGAAGAAAGTAATCCTATTCTTCACTTAGAGATTCTTCC ATCCCCTCAAGTGCCGAAACATGCTTTGCATTTGCGGGTTTCTGTTGTGAGGATTCCTGA ATGTGGTGTGTTTGCTTCTCTAAAGGCAAATTCAGCCATTGGAGGAAGTGACTACCAAGA TATGATTGATCAAGCTCTGAATGAGCACTTTAAGTTTGATAGGTTCCTAGCGAGAGGGGA TGTTTTTTGCATAAGGAACAATTGGAATTGTGGCGCAACCTCCTGCCTTGCATGCAACAG GGAGGACAATAGACTCCATCCTCATGATATGATTTACTTCAAGGTGACTGGCATGGAACC ATCAGATGAACCAGTTCATCGCGTCAACTGTAATCAAACAGCCCTTGTTCTTGGGGGAGG TGCTTCTGCTTCAATACCCCCTTACAGTTTGTTTGCTTCTCCTGGTGCTTCAGTTCCTTT GCACAGTGAAATAGTGGAGCATTTAGCATCTATCATTGCACCAGCACTATGTCCTTCAAA CATTTTGCCAAAAGTCAAGTTTTCCACTTTCTTATACGGGCCTTCAGGATGTGGGAAGCG GACGGTAGTCAAGCATGTTGCCAACCATTTTGGTTTGCATGTGGTTGAGTGTAGCTGTCA TGATCTAATGACTTCATCAGATAGCGGGGCACCAGCTGCACTTGTGGCTGCCTTCAAAGA AGCTCATAAGTATTCACCATGTATAATACTTCTTCGCCACTTTGATGCTATTGGGAATAC ATCCTCCAACGAAGGGACACAATCTGCGCAATCTGGCACTGCAGCAAACATTGAATCCGT CATCAAGCAGTACATTGGACAACATTGGGTTGCTACGGAATCGCTCCCAGCAAGAGATAT AAATGGAAATCCATACCTTGTGGAACCTGAATGTGTAAGCCCACTTCAAGTTATACTAGT TGCAACTGCAGATCGTGCTGAAGGAATGCCACAATCAATTAGGCGATGTTTCCGCCATGA GATAAACATGAAAAGTATAAATGAAGAACAGAGGAGGAACTTGATATCTGAAACACTCCA TTGTGTTTCAACGTCAGCTGATGAGAGTATAAATGACAAGTTCGTAAAAGATTTAGCAGT ACAAACGTCTGGTTTCATGCCAAGGGATATACTTGCATTGGTTGCAGATGCTGGCATATC TTTTGCACATAAAGTTGAAACGGATAAAAATAATAGCGAAGGTGATAAGCTTAAAGGCAT CCTTCCTACAAGCTCTTCTAGCTCTCAAAATGAAGAAAAAACTTTTTGCAAAGAATATAT TTTGTCTTCTCTAGAACGGGCCAAGAAAAGGAATCGTGCTGCACTGGGTACACCCAAAGT TCCTAATGTCAAATGGGAGGACGTTGGTGGTCTTGAGGAAGTGAAAAAGGTTATTCTAGA TACTATTCAGTTACCTCTGTTGTATAAGCACCTTTTTTCTTCTAAATTGGGGAAGCGGTC AGGTGTCCTGTTGTATGGACCTCCTGGCACAGGGAAGACATTATTGGCAAAAGCTGTAGC AACAGAGTGCTCTTTAAACTTTCTTAGTGTAAAAGGTCCAGAATTGATTAACATGTATGT TGGAGAATCGGAGAAGAATGTAAGGGACATTTTTGAGAAGGCAAGATCTGCACGGCCATG TGTAATTTTCTTTGATGAGCTTGATTCCCTTGCTCCTGCACGAGGATCCTCCTCAGATTC CGCAGGTGTGATGGATAGAGTAGTTTCACAGTTGCTTGTGGAGATTGATGGGTTAAGCGA TAACAGTCAGGATCTTTTCATTATTGGAGCTACAAATAGGCCTGACCTTCTTGATTCTGC ACTTCTCCGGCCTGGCCGCTTTGATAAGCTTCTCTATGTTGGTGTAAATTCAGATGCATC ATATAGAGAAAGGATCCTGAAAGCACAGACACGCAAGTATAAGCTCCATGAGAATGTTTC TCTCTTGTCAATTGCTCAGCAATGTCCTCCAAACTTTACCGGTGCTGATATTTATGCGTT ATGCGCAGACGCATGGTATCATGCTGCTAAGAACTTGGCCAAAACACTTGAGGCTGATCC TTCAAGAACCAGTGAAGCCAGTGCTGATGACGTCATTGTTGAGATAAATGATTTCATGAC AGTGTTAGGGGATATCACACCATCGTTGTCTATAGAAGAATTACAAAACTATGAACAGTT GAGGAAGAAGATTGAGGGACCATCTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACC ATAGCAACCTAAGTTTCAGTGTATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAG TGATGAATGTGGCACCATTTTTCTTTCCACCATGCCAGATCTTCCGGGCTCCAGTTATAT TTTGACTTCAACACGAGCTAACTGACCTTATCTGCAAAGGCATTATCATCTAGAATCTAG ACAGTTTCTGGTTCTGCTTTAGTTAGGGTTCAACGAATTGACTCAAAATTGCAAACGCTG CATAGCATTCATATATAGAAAGTGAGTATACTCATGTATCATCTCAACTATGTATCCTCC TGTCCTCTATCCTTCAGAGGACAATACTGCTACGTTTTGTTGGCAACCTTTTCCTTTGTC AACTAGATAGTCTGCACCTTCAGCAAACTAATCCTAGCATACTTTTCTTTCT