Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0616700-03
CDS Infomation	cds chromosome:IRGSP-1.0:4:31317589:31327912:-1 gene:Os04g0616700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os04t0616700-01);Hypothetical conserved gene. (Os04t0616700-02);Similar to H0525G02.12 protein. (Os04t0616700-03);Similar to H0525G02.12 protein. (Os04t0616700-04)
Sequence	ATGGCTCTCTCTGTGCTCCTGCTGCTTCTTGCAGCGGTTGCTCAGGCTCAGAAAGCACCG ACGGCGACGACTGATCGGATTGAGGCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGAC CAGAAGGCGGAATGGAACACCACCGGCGATCCGTGCAGCGGCGCGGCGACGGACAGCACC GACATCAACGACTCCAGCATCAACCCGGCCATCAAGTGCGACTGCTCCGACCAGAACAAC ACAGTGTGCCACATCACCGGGCTGAAGATATATGACAAGGATGCAACTGGCCAGATACCA GGAGAGCTGCGGAACCTCACACATTTAACCCATCTAAATTTATCACATAATTTTTTGGTA GGGACTATACCATCGTTCATTGGGGAGTTGGCTGCTATGCAGTACATGACTTTTGGCATC AATGCATTATCTGGATCTATTCCAAAGGAGCTTGGTAACCTTACAAATCTCGTATCCCTG GGTTTCAGCTCAAACAATTTTAGTGGTTCCCTTCCTTCAGAACTTGGGAGCCTGTTCAAA CTTGAGGAATTGTTCATTGACAGTGCTGGCTTAAGTGGAGAGCTACCATCATCATTATCC AAGCTTACAAGAATGAAAATATTGTGGGCATCGGATAATAATTTTACTGGGCAAATACCG GATTATATTGGGAGCTGGAATTTAACAGACCTGCGGTTTCAAGGAAATTCTTTTCAAGGT CCACTTCCAGCTAATCTTTCTAATCTTGTCCAATTAACAAACTTGCGAATTGGCGATATA GCAAGTGGAAGCTCATCTTCACTGGCATTCATCAGTAACATGACATCTTTGAATACCCTG ATTTTGAGGAACTGTATGGTATCTGATAGTCTTGCATTAATAGACTTTTCGAAGTTTGCA AGTTTAACCTTACTGGATTTGAGTTTTAACAATATCACTGGCCAAGTACCACAAACCTTG TTAAATCTGAATTTTCTTAGCTATTTATTTCTTGGAAATAATAATCTTACAGGAAGCCTT CCAAGCTCAAAAATACGTTCATTGAGAAATTTAGATTTTTCTTACAACCAGCTTTCAGGA AATTTCCCTTTTTGGGTTAGTGAGGAAGATTTGCAATTGAATTTGGTGGCAAACAATTTC ATGGTCAATATATCCAATAACAGTGCCTTACCTTCGGGGCTGGAGTGTCTTCAGCAAAAT ACTCCGTGCTTTCTTGGTTCTCCACATTCTGCCTCCTTTGCTGTGGACTGTGGTAGCACC AGATTCATATCAGGCTCACGTAATTCCAGCTATCAAGCTGATGCTACCAATCTTGGAGCT GCATCATATCATGTTACAGAACCTTTGACATGGGGTATTAGCAACGTTGGAAAGTTCATG GACACACCAAATGGAACTACCATAATCAACAACGCGCGCCAGTTTCAGGCCACGCTAGAT TCGGAATTGTTCCAAACTGCAAGGATGTCGCCATCATCTTTAAGATATTACGGTATTGGA CTTCAGAATGGAAACTATACAGTCTCACTTCAATTTGCAGAGTTTGGGTTTGAAGATACA GAGTCTTGGAAAAGCCGAGGGAGAAGGGTTTTCGATATATATGTACAGGGTGAACGTAAG GAGAAGGACTTTGACATCAAGAAGGAAGCAGGTGGTAAATCTTACACTGCAGTTAAGAAG GATTATATCGTTTCTGTCACCAGAAACTTCGTTGAGATTCATCTCTTCTGGGCTGGCAAG GGAACTTGCTGCATTCCTACTCAAGGATACTATGGGCCCACTATCTCAGCTCTGAGTTTA AGCCCAAATTTCACCCCTACAATTGGTAACGTGGCAGAACAAAACAGTAGTACTAGTAAA ACAGTTGTAATTGTTGCAGTTGCAATTGGTGTGACAATTTTAGGTTTGGTAGCACTTGTT GGAATCTTTCTTTGGAGAAAGAAAAGGAGAAAGCTATCACTGGAGCAACAAGAGCTGTAC AGTATTGTTGGAAGACCTAATATATTCAGTTATGGTGAACTAAGGTCCGCAACTGAAAAT TTTAGTTCCAGCAACCGTCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGGGTAAGCTA ATGGATGGAAGGATAGTGGCAGTGAAGCAGCTATCTCAAACATCTCATCAAGGGAAAAAA CAATTCGCAACTGAAATAGAAACTATATCCCGAGTGCAACACCGTAATCTCGTGAAGTTG TATGGTTGTTGCCTTGAAGGCAATAATCCACTGCTGGTTTATGAGTATATGGAGAATGGG AGCCTTGATAAAGCACTGTTCGGAACTGAGAAATTACATATAGGGTGGCCAGCACGCTTT GAAATATGCTTGGGCATTGCAAGAGGTCTGGCTTATCTTCATGAAGAGTCAAGCATCCGT GTTGTGCACAGGGACATCAAGGCCAGCAATGTCTTACTTGACGCCAATCTCAATCCTAAG ATCTCGGATTTCGGGCTAGCCAAACTTTATGATGACAAGATGACTCATGTTAGCACAAAA GTTGCTGGTACATTTGGTTATCTTGCACCTGAGTACGCCATGAGAGGACATATGACTGAG AAAGTTGATGTGTTTGCATTTGGCGTGGTCTTATTGGAGACTTTAGCTGGCCGGCCAAAC TATGATGATGTGCTTGAAGAAGACAAAATTTATATTTTCGAATGGGTCTGGAGGCTGTAC GAGAGCGAACGCGCCCTTGACATCGTAGACCCAAACCTCACAGAATTCAACAGCGAGGAG GTGCTCCGCGCCATCCACGTGGCCCTCCTCTGCACCCAGGGCTCACCTCACCGGCGGCCG TCCATGTCGAGGGTCGTGGCGATGCTCACCGGCGACGCTGAGGTGGGCGAGGTGGCGGCG AAGCCCAGCTACATCACGGAGTGGCAGATCAAGGGCGGCGGCACCACCACCACCACCACC GGCTCCTCGTCCACGAGCAGCAGCGCCGCCAACGGGCAGTGGAGCTCGGCGCCGCCGCCG CCGAGGGCCACCTCCTCGCCGAAGATGTCGTCGCCGTTCTTGAGCTCCGTCGTCGACGAA GGCAGGTGA

Peptide Sequence

PEP ID	Os04t0616700-03
PEP Infomation	pep chromosome:IRGSP-1.0:4:31317589:31327912:-1 gene:Os04g0616700 transcript:Os04t0616700-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os04t0616700-01);Hypothetical conserved gene. (Os04t0616700-02);Similar to H0525G02.12 protein. (Os04t0616700-03);Similar to H0525G02.12 protein. (Os04t0616700-04)
Sequence	MALSVLLLLLAAVAQAQKAPTATTDRIEAEALKAVFEKLDQKAEWNTTGDPCSGAATDST DINDSSINPAIKCDCSDQNNTVCHITGLKIYDKDATGQIPGELRNLTHLTHLNLSHNFLV GTIPSFIGELAAMQYMTFGINALSGSIPKELGNLTNLVSLGFSSNNFSGSLPSELGSLFK LEELFIDSAGLSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLRFQGNSFQG PLPANLSNLVQLTNLRIGDIASGSSSSLAFISNMTSLNTLILRNCMVSDSLALIDFSKFA SLTLLDLSFNNITGQVPQTLLNLNFLSYLFLGNNNLTGSLPSSKIRSLRNLDFSYNQLSG NFPFWVSEEDLQLNLVANNFMVNISNNSALPSGLECLQQNTPCFLGSPHSASFAVDCGST RFISGSRNSSYQADATNLGAASYHVTEPLTWGISNVGKFMDTPNGTTIINNARQFQATLD SELFQTARMSPSSLRYYGIGLQNGNYTVSLQFAEFGFEDTESWKSRGRRVFDIYVQGERK EKDFDIKKEAGGKSYTAVKKDYIVSVTRNFVEIHLFWAGKGTCCIPTQGYYGPTISALSL SPNFTPTIGNVAEQNSSTSKTVVIVAVAIGVTILGLVALVGIFLWRKKRRKLSLEQQELY SIVGRPNIFSYGELRSATENFSSSNRLGEGGYGAVYKGKLMDGRIVAVKQLSQTSHQGKK QFATEIETISRVQHRNLVKLYGCCLEGNNPLLVYEYMENGSLDKALFGTEKLHIGWPARF EICLGIARGLAYLHEESSIRVVHRDIKASNVLLDANLNPKISDFGLAKLYDDKMTHVSTK VAGTFGYLAPEYAMRGHMTEKVDVFAFGVVLLETLAGRPNYDDVLEEDKIYIFEWVWRLY ESERALDIVDPNLTEFNSEEVLRAIHVALLCTQGSPHRRPSMSRVVAMLTGDAEVGEVAA KPSYITEWQIKGGGTTTTTTGSSSTSSSAANGQWSSAPPPPRATSSPKMSSPFLSSVVDE GR

Transcript Sequence

Transcript ID	Os04t0616700-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:31317589:31327912:-1 gene:Os04g0616700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os04t0616700-01);Hypothetical conserved gene. (Os04t0616700-02);Similar to H0525G02.12 protein. (Os04t0616700-03);Similar to H0525G02.12 protein. (Os04t0616700-04)
Sequence	GAAGAGTGAGGTTGATCGATGAGAGCACAGTGATTCGGCTCCCATGGCTCTCTCTGTGCT CCTGCTGCTTCTTGCAGCGGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCG GATTGAGGCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAA CACCACCGGCGATCCGTGCAGCGGCGCGGCGACGGACAGCACCGACATCAACGACTCCAG CATCAACCCGGCCATCAAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCAC CGGGCTGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAACCT CACACATTTAACCCATCTAAATTTATCACATAATTTTTTGGTAGGGACTATACCATCGTT CATTGGGGAGTTGGCTGCTATGCAGTACATGACTTTTGGCATCAATGCATTATCTGGATC TATTCCAAAGGAGCTTGGTAACCTTACAAATCTCGTATCCCTGGGTTTCAGCTCAAACAA TTTTAGTGGTTCCCTTCCTTCAGAACTTGGGAGCCTGTTCAAACTTGAGGAATTGTTCAT TGACAGTGCTGGCTTAAGTGGAGAGCTACCATCATCATTATCCAAGCTTACAAGAATGAA AATATTGTGGGCATCGGATAATAATTTTACTGGGCAAATACCGGATTATATTGGGAGCTG GAATTTAACAGACCTGCGGTTTCAAGGAAATTCTTTTCAAGGTCCACTTCCAGCTAATCT TTCTAATCTTGTCCAATTAACAAACTTGCGAATTGGCGATATAGCAAGTGGAAGCTCATC TTCACTGGCATTCATCAGTAACATGACATCTTTGAATACCCTGATTTTGAGGAACTGTAT GGTATCTGATAGTCTTGCATTAATAGACTTTTCGAAGTTTGCAAGTTTAACCTTACTGGA TTTGAGTTTTAACAATATCACTGGCCAAGTACCACAAACCTTGTTAAATCTGAATTTTCT TAGCTATTTATTTCTTGGAAATAATAATCTTACAGGAAGCCTTCCAAGCTCAAAAATACG TTCATTGAGAAATTTAGATTTTTCTTACAACCAGCTTTCAGGAAATTTCCCTTTTTGGGT TAGTGAGGAAGATTTGCAATTGAATTTGGTGGCAAACAATTTCATGGTCAATATATCCAA TAACAGTGCCTTACCTTCGGGGCTGGAGTGTCTTCAGCAAAATACTCCGTGCTTTCTTGG TTCTCCACATTCTGCCTCCTTTGCTGTGGACTGTGGTAGCACCAGATTCATATCAGGCTC ACGTAATTCCAGCTATCAAGCTGATGCTACCAATCTTGGAGCTGCATCATATCATGTTAC AGAACCTTTGACATGGGGTATTAGCAACGTTGGAAAGTTCATGGACACACCAAATGGAAC TACCATAATCAACAACGCGCGCCAGTTTCAGGCCACGCTAGATTCGGAATTGTTCCAAAC TGCAAGGATGTCGCCATCATCTTTAAGATATTACGGTATTGGACTTCAGAATGGAAACTA TACAGTCTCACTTCAATTTGCAGAGTTTGGGTTTGAAGATACAGAGTCTTGGAAAAGCCG AGGGAGAAGGGTTTTCGATATATATGTACAGGGTGAACGTAAGGAGAAGGACTTTGACAT CAAGAAGGAAGCAGGTGGTAAATCTTACACTGCAGTTAAGAAGGATTATATCGTTTCTGT CACCAGAAACTTCGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGAACTTGCTGCATTCC TACTCAAGGATACTATGGGCCCACTATCTCAGCTCTGAGTTTAAGCCCAAATTTCACCCC TACAATTGGTAACGTGGCAGAACAAAACAGTAGTACTAGTAAAACAGTTGTAATTGTTGC AGTTGCAATTGGTGTGACAATTTTAGGTTTGGTAGCACTTGTTGGAATCTTTCTTTGGAG AAAGAAAAGGAGAAAGCTATCACTGGAGCAACAAGAGCTGTACAGTATTGTTGGAAGACC TAATATATTCAGTTATGGTGAACTAAGGTCCGCAACTGAAAATTTTAGTTCCAGCAACCG TCTTGGTGAAGGAGGATATGGGGCAGTTTATAAGGGTAAGCTAATGGATGGAAGGATAGT GGCAGTGAAGCAGCTATCTCAAACATCTCATCAAGGGAAAAAACAATTCGCAACTGAAAT AGAAACTATATCCCGAGTGCAACACCGTAATCTCGTGAAGTTGTATGGTTGTTGCCTTGA AGGCAATAATCCACTGCTGGTTTATGAGTATATGGAGAATGGGAGCCTTGATAAAGCACT GTTCGGAACTGAGAAATTACATATAGGGTGGCCAGCACGCTTTGAAATATGCTTGGGCAT TGCAAGAGGTCTGGCTTATCTTCATGAAGAGTCAAGCATCCGTGTTGTGCACAGGGACAT CAAGGCCAGCAATGTCTTACTTGACGCCAATCTCAATCCTAAGATCTCGGATTTCGGGCT AGCCAAACTTTATGATGACAAGATGACTCATGTTAGCACAAAAGTTGCTGGTACATTTGG TTATCTTGCACCTGAGTACGCCATGAGAGGACATATGACTGAGAAAGTTGATGTGTTTGC ATTTGGCGTGGTCTTATTGGAGACTTTAGCTGGCCGGCCAAACTATGATGATGTGCTTGA AGAAGACAAAATTTATATTTTCGAATGGGTCTGGAGGCTGTACGAGAGCGAACGCGCCCT TGACATCGTAGACCCAAACCTCACAGAATTCAACAGCGAGGAGGTGCTCCGCGCCATCCA CGTGGCCCTCCTCTGCACCCAGGGCTCACCTCACCGGCGGCCGTCCATGTCGAGGGTCGT GGCGATGCTCACCGGCGACGCTGAGGTGGGCGAGGTGGCGGCGAAGCCCAGCTACATCAC GGAGTGGCAGATCAAGGGCGGCGGCACCACCACCACCACCACCGGCTCCTCGTCCACGAG CAGCAGCGCCGCCAACGGGCAGTGGAGCTCGGCGCCGCCGCCGCCGAGGGCCACCTCCTC GCCGAAGATGTCGTCGCCGTTCTTGAGCTCCGTCGTCGACGAAGGCAGGTGACGGCTTCG CGCCGCTGCTCGCCGGTGCTTGGTTCGGATCAAACTTCTCAAGAAACGGGCAGATAATAG CGTCAAAATACGTTGGTTTTTTAGGGACTCGAAATAAAACCGCTGCTCAAAACCACGGGG GGAGATAGATTGTACCGGTTTTAATAATTAGGGAGTTATCTCACACGGTTTTCCGGTCAA GACATACAAATTAGAGAGAATCTCTTATATGCCACTAGAAATTTATTAGTTCCTTTATAT ACCACTCAAAATTAGCTTCTCTCTTATATGCCACTGATTCAAGTTTTTCCATCCTTTTAT ACCACTCCCAGCACTACAGTGTTAGTTGACTGTTAGTCAAACGTTAGTTTTTTTGGTAAA TGACCAATATGCCCTCTCAACTAAAAAAATATATAAACTTCAAAAAAATCATAACTAATT TATTTTAAATCCTTTTTGAGTGAACAAAATTTTGTTAGAACCAGTGAAAATGCTCTTTGT ATTAATAAGGCTATCTTTGTTTAGGCTTAGACTTTTCGACTTATAAGTTGGTTTATAAGT CTAAACAAACAAGCAGCTTTTCCGTTTGGCTTTTTTGAAGCCATAAGCCACTCTAACACT ATTAAGCCAAAAGCTAGGTTGAAGAAGCTTTTTTTGGCTTATGTGAGGTAGATGTATGAC TCAACCACTAAACTTAGGACATTAAATCCACCGGCTTATAAGTCATATAAGCCACTAAGC TGACTTAAAAGTCTAAGTCAATAAGCCTAAGCCTAAACAAAGAGGGCCGAAAAATATTGT TGGAAAACTGCATGTTTCATGCTTTTATTGAAAATTTATTGTGATGGTGATGGATAAAAT TGCATGTGATGAAAAAAATATCAATTTTCATATGTTTGTATCCAGTAGCTATATTAGTAT TCAAATACTTATTATTGGTTGTATACCAACTCTCAAGGGCAAATGCGTTTTTGTACTATA AAATTAACGGTCAACTGACGATGGAGTGACGGCAATGGCATAAAAGGGAGGATAAACTTG AACCGGTGGCATAAAAGGGAGAAGCCAATTTGAAGTGGCATATAAGGGAACCGATTAATT TGGAGTGGTATATAAGGGATTCTCTCTGCAAATTAGATTTGGCATGTTTTTAAGGGATTC AATGTGAACTTTTCCTCCGTAAATACGGGCTCTATATTAGCCCGAATTCCCAGCGC