Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0615900-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:31251438:31254040:-1 gene:Os04g0615900 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAR1 domain containing protein. (Os04t0615900-01)
Sequence

ATGGCCACCGCCTCCACCTCCGGCGACCCCACCGCCGCCGCCGGCGAGCCCACGCCGTCG
TCCTCAGCATCCGCGCAGCCACGGCAGCCGGCGTCCCGCATATCCCACATCGTGCGCACC
TACCTCGACCTCTCCTCCAACCCCAAGAAGCGCCGCGCCGCTCCCAAGAGCCACCCCAAG
CCCGCCGCCGCCGCCGCCGGCCAAGGCGCCCCCGATGCCGGAGACGGGAAGGACGGCGGC
GGGAAGGCGGCGGCGACCCCATCGTCGGCGGCGCAGCCCACGACCACGCGGCTCCTCCGC
GAGCTCGGCGTCCGGGTCTCCCGCTACACGCACGAGGAGCGCCGCGACATCGTCCTCCGC
TACATGCAGAAGCGGAGCGGCCGCCAGGGCGTCAAGCGCGCCACCGCCAAGGCCCCATCG
AGGCAGGCTCTCGCGGAGCGGCGGCGGCGGGGTGCGAGAGGGCAGTTCCTCGGCAAGGAG
GGCGCCAAGACTGTAGATAAACCAGAAGAAGATCCAGAGGTGCCGCCAGAAGTTATTGCT
AACGCTGGAGGAGTGCCCATAGTTGGAATGGTTTTCGAGAATGAAGAGAAAGCATATGAG
TATTATGCTAGTTATGCTGGAAATGTAGGATTCAGTGTTCGAAAAGGATTGTGGGATAAA
ACGGTGAAAAATGTTGCTAGGTCAAGGGTCTTTGTATGCTCTAGGGAGGGATTTCGCTCA
AAGAATGAGGCCAAAAGACCTCGCCCAGAGACTAGGACAGGTTGTCCTGCACGGATAGCT
ATAAAATTGGTATCCAATGGCAAGTACCGGGTAGCAGAATTTGTGGAAGATCACAATCAC
CAGCTTGCTGCACCATTTGATATAGATATGCTGAAGTCAGAGAGAGTGTTGACCAAGGTT
CAACCAGGAAACCGAAATGCTAGTAACATTCCTCCAGGATGCAAGAATTACATTCGGGCC
AAGTCTTCAACACACATGAATTCAGAGGACCTTGGAGCTCTAATGGATTATTTTCGAAGA
ATGAAGAGTGATAATCCCTCTTTTTACTATGCCATTCAGGTGGATGAAAATGATAAAGCA
ACAAATGTCTTCTGGGCTGATGCAAGATCAATAGTAGACTATCATTATTTCTGTGATGTG
ATCTGCTTTGACACAACACACAGATCAAATGACTGCAGAAAACCCTTAGCTTTGTTTTTG
GGTATGAACCATCATAGGCAAACAATCATATTTGGCTCTGCTTTTCTGTATGATGAAACT
GTTGAATCTTTCAAGTGGCTTCTCGAGACCTTTAAGAGTGCCATGTGTGGGAAACAGCCA
AAGACGATATTGACAGATCGATCTGCTGCTTTGAAGGAAGCCCTGAGTCTCACCTGGCCT
GGTACAATTCACCGTTCTTGTGTGTGGCAAATATACCAGAATGCTTTTAAGTCCTTAGAA
CATGTTTTTAATACTCTTGAGGAATTCACACATGATTTTCACCACTGCATGTTTGATATC
GAGGATGACCAGGAGTTTGATGAGATATGGAATGTGATAATCAAGAAGTACAGCCTCAAA
GGAGAGGAATGGTTAACTAAGTTGTATGAAGATCGGGAAAATTGGGCCTTGCCATATAAC
CGGCAAATATTCTTTGGGGACATTAAAGGGATGTTACAAGTAGAAACTTCTTGCGTTGGG
CTGAGAGAGTTCTTGGATTGTGAGAAAGATCTCTCTAAATTTTTTATGTTCTTTGAAAGC
TCAATGGAGAAGAGGAGGCAAGAAGAGATACAAGCTGATTACCAAGCCAGCGAAGGGGCA
CCAAGAATATCTCTGCCACTGCTATGGCAAGCTGCAAAAGTGTATACACCAATCATCTTT
GAGTTATTTAGAAAGGAATATGAACTGTGTATGGACTGTATGGCTTATAGTTGTGGGGAG
TTTGGCTCTCTTTCTGAGTACATGATCACTGTTAAGAATAAAACTAAAGACCAGCTTGTG
CGGTTTGACTCATCAGATGGCACAGTTGCATGTACTTGTAAAAAATTTGAAAATGCTGGA
ATATTATGTTGCC

Peptide Sequence

PEP ID

Os04t0615900-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:31251438:31254040:-1 gene:Os04g0615900 transcript:Os04t0615900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAR1 domain containing protein. (Os04t0615900-01)
Sequence

MATASTSGDPTAAAGEPTPSSSASAQPRQPASRISHIVRTYLDLSSNPKKRRAAPKSHPK
PAAAAAGQGAPDAGDGKDGGGKAAATPSSAAQPTTTRLLRELGVRVSRYTHEERRDIVLR
YMQKRSGRQGVKRATAKAPSRQALAERRRRGARGQFLGKEGAKTVDKPEEDPEVPPEVIA
NAGGVPIVGMVFENEEKAYEYYASYAGNVGFSVRKGLWDKTVKNVARSRVFVCSREGFRS
KNEAKRPRPETRTGCPARIAIKLVSNGKYRVAEFVEDHNHQLAAPFDIDMLKSERVLTKV
QPGNRNASNIPPGCKNYIRAKSSTHMNSEDLGALMDYFRRMKSDNPSFYYAIQVDENDKA
TNVFWADARSIVDYHYFCDVICFDTTHRSNDCRKPLALFLGMNHHRQTIIFGSAFLYDET
VESFKWLLETFKSAMCGKQPKTILTDRSAALKEALSLTWPGTIHRSCVWQIYQNAFKSLE
HVFNTLEEFTHDFHHCMFDIEDDQEFDEIWNVIIKKYSLKGEEWLTKLYEDRENWALPYN
RQIFFGDIKGMLQVETSCVGLREFLDCEKDLSKFFMFFESSMEKRRQEEIQADYQASEGA
PRISLPLLWQAAKVYTPIIFELFRKEYELCMDCMAYSCGEFGSLSEYMITVKNKTKDQLV
RFDSSDGTVACTCKKFENAGILCC

Transcript Sequence

Transcript ID

Os04t0615900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:31251438:31254040:-1 gene:Os04g0615900 gene_biotype:protein_coding transcript_biotype:protein_coding description:FAR1 domain containing protein. (Os04t0615900-01)
Sequence

GGCCGATCCCACCACCACCACCACCATGGCCACCGCCTCCACCTCCGGCGACCCCACCGC
CGCCGCCGGCGAGCCCACGCCGTCGTCCTCAGCATCCGCGCAGCCACGGCAGCCGGCGTC
CCGCATATCCCACATCGTGCGCACCTACCTCGACCTCTCCTCCAACCCCAAGAAGCGCCG
CGCCGCTCCCAAGAGCCACCCCAAGCCCGCCGCCGCCGCCGCCGGCCAAGGCGCCCCCGA
TGCCGGAGACGGGAAGGACGGCGGCGGGAAGGCGGCGGCGACCCCATCGTCGGCGGCGCA
GCCCACGACCACGCGGCTCCTCCGCGAGCTCGGCGTCCGGGTCTCCCGCTACACGCACGA
GGAGCGCCGCGACATCGTCCTCCGCTACATGCAGAAGCGGAGCGGCCGCCAGGGCGTCAA
GCGCGCCACCGCCAAGGCCCCATCGAGGCAGGCTCTCGCGGAGCGGCGGCGGCGGGGTGC
GAGAGGGCAGTTCCTCGGCAAGGAGGGCGCCAAGACTGTAGATAAACCAGAAGAAGATCC
AGAGGTGCCGCCAGAAGTTATTGCTAACGCTGGAGGAGTGCCCATAGTTGGAATGGTTTT
CGAGAATGAAGAGAAAGCATATGAGTATTATGCTAGTTATGCTGGAAATGTAGGATTCAG
TGTTCGAAAAGGATTGTGGGATAAAACGGTGAAAAATGTTGCTAGGTCAAGGGTCTTTGT
ATGCTCTAGGGAGGGATTTCGCTCAAAGAATGAGGCCAAAAGACCTCGCCCAGAGACTAG
GACAGGTTGTCCTGCACGGATAGCTATAAAATTGGTATCCAATGGCAAGTACCGGGTAGC
AGAATTTGTGGAAGATCACAATCACCAGCTTGCTGCACCATTTGATATAGATATGCTGAA
GTCAGAGAGAGTGTTGACCAAGGTTCAACCAGGAAACCGAAATGCTAGTAACATTCCTCC
AGGATGCAAGAATTACATTCGGGCCAAGTCTTCAACACACATGAATTCAGAGGACCTTGG
AGCTCTAATGGATTATTTTCGAAGAATGAAGAGTGATAATCCCTCTTTTTACTATGCCAT
TCAGGTGGATGAAAATGATAAAGCAACAAATGTCTTCTGGGCTGATGCAAGATCAATAGT
AGACTATCATTATTTCTGTGATGTGATCTGCTTTGACACAACACACAGATCAAATGACTG
CAGAAAACCCTTAGCTTTGTTTTTGGGTATGAACCATCATAGGCAAACAATCATATTTGG
CTCTGCTTTTCTGTATGATGAAACTGTTGAATCTTTCAAGTGGCTTCTCGAGACCTTTAA
GAGTGCCATGTGTGGGAAACAGCCAAAGACGATATTGACAGATCGATCTGCTGCTTTGAA
GGAAGCCCTGAGTCTCACCTGGCCTGGTACAATTCACCGTTCTTGTGTGTGGCAAATATA
CCAGAATGCTTTTAAGTCCTTAGAACATGTTTTTAATACTCTTGAGGAATTCACACATGA
TTTTCACCACTGCATGTTTGATATCGAGGATGACCAGGAGTTTGATGAGATATGGAATGT
GATAATCAAGAAGTACAGCCTCAAAGGAGAGGAATGGTTAACTAAGTTGTATGAAGATCG
GGAAAATTGGGCCTTGCCATATAACCGGCAAATATTCTTTGGGGACATTAAAGGGATGTT
ACAAGTAGAAACTTCTTGCGTTGGGCTGAGAGAGTTCTTGGATTGTGAGAAAGATCTCTC
TAAATTTTTTATGTTCTTTGAAAGCTCAATGGAGAAGAGGAGGCAAGAAGAGATACAAGC
TGATTACCAAGCCAGCGAAGGGGCACCAAGAATATCTCTGCCACTGCTATGGCAAGCTGC
AAAAGTGTATACACCAATCATCTTTGAGTTATTTAGAAAGGAATATGAACTGTGTATGGA
CTGTATGGCTTATAGTTGTGGGGAGTTTGGCTCTCTTTCTGAGTACATGATCACTGTTAA
GAATAAAACTAAAGACCAGCTTGTGCGGTTTGACTCATCAGATGGCACAGTTGCATGTAC
TTGTAAAAAATTTGAAAATGCTGGAATATTATGTTGCC