Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0613200-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:31089267:31092608:1 gene:Os04g0613200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os04t0613200-01)
Sequence	ATGAAGAACATGGAGGCTGCAAGAAGAGGAAGAAGAGGAAGGCAAGGTGGTGGTTTGCTG CTGGTGGTTCTTGCCGCTCTTCTGCTTCTTCTCCTTGCATTGGCGCGCGGCGCGAGCGCG TGGGCCCACGGCGGGCTCGCCGGCGGCGCCGGCGCCGGCGCCGGCGAGCGGCGGTACATG GATCTCGCGATGAGGAGGATGGAGAGCGTCAGATCTTCCTTCGTCGCGAGGAGGGAATTA GCAACGTCTACGGCGGCGAGCTCGTCGCGGGTGTACCACGTGACGGACTACGGCGCCGAC CCGACCGGCGGCGCCGACGCGACGGCGGCGATCAACAGCGCCATCGCCGACGCGTTCCGC CGCCCCTCCAACGCCACCATGACCGGCGGCATCCCCGACCTCGGCGGCGCCGAGATCCAC CTCGACGGCGGCTCCTACCTCCTCAAGGGCCCCCTCTCCCTCCCCGCCTCCGGCGGCGGT AACTTGAAGATTCACAGCGGGTCGCTGCGGGCGGCGGACGACTTCCCGACGGACCGGTAT TTGATCGAGCTGTCGGCGAAGGCGGCCGGCGGTGGCGGGGGGAGCTCGCCGGCGATGAGC TACTACTACGAGTACGTGACGCTGCGCGACCTGATGCTGGACTGCAACTACCGCGGCGGC GGCGTGCGGGTGGTGGACTCGCTCCGCGTCGGCGTCGACAACTGCTACGTCGTCCACTTC GCGACGGACGGCGTCGCGGTGAGCGGCGGCCACGAGACGTTCGTCCGGAACACCTTCCTC GGCCAGCACATGACCGCCGGCGGCGACCCCGGCGAGAGGTCGTTCACGGGCACCGGGATC CGCCTCGACGGCAACGACAACTCCGTCTCCGACGTGGTGGTGTTCTCGGCGGCGACCGGG ATCATGGTCACCGGAGGCGCCAACGCCATCTCCGGCGTGCACTGCTACAACAAGGCGACC GGGTTCGGCGGCGCGGGCATCTACCTCAAGGTGCCCGGGCTGACGCAGACGTGGATCACC AACTGCTACATGGACTACACCGGCATCGTCGCCGAGGACCCCGTGCTGCTCCACGTCTCG GGCTCCTTCTTCCTCGGCGACGCCAACGTCGTGCTCAAGGCCGTCAATGGCGTGGCGAGG GGGGTGCAGATCGTCGGCAACCTGTTCAACGGGAGGGGGAAGGGGGTGGACATCGTGGAG CTCGACGGCGAGTTCGCGACGGTGGAGCAGGTGTACGTGGCGCAGAACGCGGCGACGGGG ATGACGGTGAGGTCGACGACGGCGCGCGCCGCGGCGGAGGGGAACGGGAGCTCGTGGACG GTGGACTTCTCGCCGGTGCTGCTGTTCCCGGACCGGATCGGGCACGTGCAGTACTCGCTC GCCGCCGGCGACGCGTTCCCGGGCCACGCTCTCCGGAACGTCTCCGGCAACCGCGTCGTC ATCGCCACCGACGCCGCCGTGTCCGCCACCGTGCACGTGCTCGTCGACCAGAACAGCAGC TGA

Peptide Sequence

PEP ID	Os04t0613200-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:31089267:31092608:1 gene:Os04g0613200 transcript:Os04t0613200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os04t0613200-01)
Sequence	MKNMEAARRGRRGRQGGGLLLVVLAALLLLLLALARGASAWAHGGLAGGAGAGAGERRYM DLAMRRMESVRSSFVARRELATSTAASSSRVYHVTDYGADPTGGADATAAINSAIADAFR RPSNATMTGGIPDLGGAEIHLDGGSYLLKGPLSLPASGGGNLKIHSGSLRAADDFPTDRY LIELSAKAAGGGGGSSPAMSYYYEYVTLRDLMLDCNYRGGGVRVVDSLRVGVDNCYVVHF ATDGVAVSGGHETFVRNTFLGQHMTAGGDPGERSFTGTGIRLDGNDNSVSDVVVFSAATG IMVTGGANAISGVHCYNKATGFGGAGIYLKVPGLTQTWITNCYMDYTGIVAEDPVLLHVS GSFFLGDANVVLKAVNGVARGVQIVGNLFNGRGKGVDIVELDGEFATVEQVYVAQNAATG MTVRSTTARAAAEGNGSSWTVDFSPVLLFPDRIGHVQYSLAAGDAFPGHALRNVSGNRVV IATDAAVSATVHVLVDQNSS

Transcript Sequence

Transcript ID	Os04t0613200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:31089267:31092608:1 gene:Os04g0613200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os04t0613200-01)
Sequence	TTGATGAAGAACATGGAGGCTGCAAGAAGAGGAAGAAGAGGAAGGCAAGGTGGTGGTTTG CTGCTGGTGGTTCTTGCCGCTCTTCTGCTTCTTCTCCTTGCATTGGCGCGCGGCGCGAGC GCGTGGGCCCACGGCGGGCTCGCCGGCGGCGCCGGCGCCGGCGCCGGCGAGCGGCGGTAC ATGGATCTCGCGATGAGGAGGATGGAGAGCGTCAGATCTTCCTTCGTCGCGAGGAGGGAA TTAGCAACGTCTACGGCGGCGAGCTCGTCGCGGGTGTACCACGTGACGGACTACGGCGCC GACCCGACCGGCGGCGCCGACGCGACGGCGGCGATCAACAGCGCCATCGCCGACGCGTTC CGCCGCCCCTCCAACGCCACCATGACCGGCGGCATCCCCGACCTCGGCGGCGCCGAGATC CACCTCGACGGCGGCTCCTACCTCCTCAAGGGCCCCCTCTCCCTCCCCGCCTCCGGCGGC GGTAACTTGAAGATTCACAGCGGGTCGCTGCGGGCGGCGGACGACTTCCCGACGGACCGG TATTTGATCGAGCTGTCGGCGAAGGCGGCCGGCGGTGGCGGGGGGAGCTCGCCGGCGATG AGCTACTACTACGAGTACGTGACGCTGCGCGACCTGATGCTGGACTGCAACTACCGCGGC GGCGGCGTGCGGGTGGTGGACTCGCTCCGCGTCGGCGTCGACAACTGCTACGTCGTCCAC TTCGCGACGGACGGCGTCGCGGTGAGCGGCGGCCACGAGACGTTCGTCCGGAACACCTTC CTCGGCCAGCACATGACCGCCGGCGGCGACCCCGGCGAGAGGTCGTTCACGGGCACCGGG ATCCGCCTCGACGGCAACGACAACTCCGTCTCCGACGTGGTGGTGTTCTCGGCGGCGACC GGGATCATGGTCACCGGAGGCGCCAACGCCATCTCCGGCGTGCACTGCTACAACAAGGCG ACCGGGTTCGGCGGCGCGGGCATCTACCTCAAGGTGCCCGGGCTGACGCAGACGTGGATC ACCAACTGCTACATGGACTACACCGGCATCGTCGCCGAGGACCCCGTGCTGCTCCACGTC TCGGGCTCCTTCTTCCTCGGCGACGCCAACGTCGTGCTCAAGGCCGTCAATGGCGTGGCG AGGGGGGTGCAGATCGTCGGCAACCTGTTCAACGGGAGGGGGAAGGGGGTGGACATCGTG GAGCTCGACGGCGAGTTCGCGACGGTGGAGCAGGTGTACGTGGCGCAGAACGCGGCGACG GGGATGACGGTGAGGTCGACGACGGCGCGCGCCGCGGCGGAGGGGAACGGGAGCTCGTGG ACGGTGGACTTCTCGCCGGTGCTGCTGTTCCCGGACCGGATCGGGCACGTGCAGTACTCG CTCGCCGCCGGCGACGCGTTCCCGGGCCACGCTCTCCGGAACGTCTCCGGCAACCGCGTC GTCATCGCCACCGACGCCGCCGTGTCCGCCACCGTGCACGTGCTCGTCGACCAGAACAGC AGCTGAAGAACAAAAAATCAAAATGCTGCTGCTGCCTGCCGCGATTGCGCGCGAGCAAGG CGTTAGATTCGTTTGTTCTTGCGATTCACCGGCAAAATTCGTCTATATCAGAGAGATGGC AAAATTGGCAAT