Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0610200-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:30927631:30934094:1 gene:Os04g0610200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0152L12.4 protein. (Os04t0610200-01)
Sequence	ATGGCGCCGCCGCCGGGGATCCTCGAGGTGCGGTGCGCCGGGTGCGGCGAGACCCTGGAG GTGGAGCACGGCCTGACGGAGTTCGCCTGCCCCGACTGCGGCATGGCCCAGGCGCTCCCG CCGGAGCTCATGCCGCCGCGCCCCCGCCGCGCGCTCCCGCTCCCCGGGCGCGCGAGCGTC GTCCCCTCCGCCGTGCCCGCCCCCGCCACCGCCACCGCCGCCGCCCCTCCCACGCGCGTC TCGTGCGGGGGATGCGCGGCCGTCCTCAGCGTGCCGCACGGCCCGGGGCGGTTTTCGTGC CCGCTCTGCGGCGCCGAGATCGCGCCTCCCCCTCCCCTCGCGGCCGTCGTCTCAGTCGTT GCCCCGCCGGCAGCGATCCCGATTACCTCCAATCGGCCGGCGATGACCTCCGAGGTGCTG AATGGAAATTCAAATCAGCCAACTCTTGCTGGACAGGTTCAGAAGTCCATTATTCCAGAG CAATACTACAAGCATTCTTTTAGAGAGGAGTCATTCAGTTCATTCAGAGTTGACTCTAGG ACACAAATTCCTGATGTAGGGAGGTTACAAAACGAGTGTGTTAATCCTTCAGCTGATCGA GAGGAGTCACGCACAGAACCACCTAACGGGACTATGACCAAGCCTGGCAAGAAGAAAACT ACATCTGCTTCTGGTCCAAAATCTCATCCAGCTGGAAAGTTGCAGGAAGAGCATATTAGT AAGGCCATCCATGCATCAAGGGCTCAGGGAATGCCTTCAAACTCTGTAGGAGGAGGATTT CACAATGGCATGATTGCAGTGCACAACAAGCAGAAAACTGGGCATATAGCTGCCCCTAGT GCTATCGAGCATGAGCAGATAAACACTCTCCATCAAGTTTGTGACAAGCAGCAGCCTGGC GAAAATTCCAGTGATTTGGTTCATGTGGAGCAGGTACAGGTGGCATGCAAAGCAGTACAA AACAATAAAAAAGGTACCAAGTATACAAAAGGAAATCAAAAGAGGCAAGGTAAGAGTCCG TTGAATTATTCAACTGAGTTGCCTCATCTTAGGCGTAGTCAGCGCTTAACAAAGGGTTCG CCAGACCCTATTGATATTGAGCCTATCCATAGGATATATGCTTCCCCAAACCAAAATCAA TCAGAAACTCCACCAATTGAGAGGGCGATAGATGATACTTACCATATTTCACCAAACCAG CACCGGTATCCTCAATCAGTCTCTAATAAGTTGGACAATGCTGATGCAACTACTCCTGCT TTGAATCATAGTATGCAACAAAAGGAGAGAATTCCCCAGTGCTACAGCCAGATGTACTCT CCAGAAAGTAGGTGGGTACTTCCAAATCGTAGTTCTAATTCATGTCATGAGCATGAGATG CCTAATGAAAGCTTTGATGGGATTGTCCAACTCGATAGTAGTGATGATGAAGTGCATTCA ATTCCATTAGAGAACCAAAATCAGGATATGGATGGCCAACTAGAACAACAAGCTTGTGCT GGCAAGAACCTTTCAGAGCATGGCAGGCAAAAGAATGGCTTCATTGGTTCTTCAGGTGAT GCCAAACATCATGGGGGCTTGTCCTCTGGAATGGGAACACGCCACCAGATGAATTTGGCT GCTTCATGCAGCCGCCTTGCTGTTTTATTGCCAGTTGCGGATGCTACTCCATTGCCCACC ATCAGCTCACCTTCTTCATTTGAAAAGCTACCAGTTAACTGTAGCAGTCCAACAACACCG CACCAGCACCACCAACCATCCCCCATCTATTCTCAGGATGCCCGGAATGGTGATATGCTG TCAGCATCTGTTAGTAAATCATCAAAAAAGCGCAGGGGCCGTGCCCCTGCGGTACTAATG GAACCACGCAAAGAAGCTGACAGGCCTGTGCTGACACCTTGTGGTGCAGAAAACTGGACT GTGCATCCATCCTGTTTGAAGGTGACAACCACCCTATCCCTTCTTATCAAGCAGAACTAT CCTGGAACCTATGTTTCAGTGGGTACCAATGGCCAACCCTGTGAGCTTGCGGTTTTCCAT TGGCACCAATGTCCTTCAGATATAAGAGATACTGTATTGGATGAATTCCTTAAACGCTAC AAGTGGTCCCCTGGCCAGGAAGAGGAGTGTCGAAAGATCTTTGACCGTAAAGCAGTTAGA CAATTAGTTAACCTCTTTTGCTACGAGAAGCAAAGGGTCAGAGATTTGCTGGCAAAAAAA GCCAAAAGATCTTCGACGGTTGTTAGGGCCAGTAGGTCGTTAGAAGAGGGCGATGGTAGG GAAGATTCAGAGGAGCAGCATGGAGATGAGTCTGTTCTGGTGCTTGAGCTTGATGATCCG CTTAACTGGAAACCATTCGTCCCTGAATGGATGCAACCAAAATGGTGGGAGAAGTTGTGT GACCATTGGGCGAAAGATGAAGTTATGAAGGTCTCTTACCAAAAAAGGAAGAACCGGAAT GCAGGAAACCCCCCCTGTAATGCTTCAGGCTCACAGAGCATAGCAATGCATCAGCAGTTT ACGAGCATTGACAATGGCAGAAAGCTGGTATCTGATATTGATCCATCCACCAAGATTAAC AGTGATAAAGGAGGGATTATTGACAAGAAGATATTGCGAACTGAGGATACCACGTATGAA CATACTGCAGAGGCCAGAGAGCCTGTACAGGAACATATGGGAGGCTGCAAGCGTGGGAGA TACTATTGCGACACTGGTGTTAGGAAGAAGGTCCAGACTGATTCTTTGCCAAAGTCCTCC CCTGGTTGTTCCAGCAATCACGGACAAGGACAACCTCCGATGTTCACACATGAACAGGTG CAACAGATGATTAATCAAGCTCTACAAGGGTTAAATGAGACATGGGAGAAGAAGTTTTTG TCTTTGGAGCAAAACATGCGGAGCATGTCAAAATCACGCATTATTCTGGATGGTCCGAAA AAGGGGTCATTGGCGGCTGTTGCAGGGGATAAGCGATGCCAGCTGTCATGCCAGGACACA TTAGATTCCGTGGACGGTGAAAAGGATCCAGCGGGGGAAGGCGAGGACGACCCCGAGAAC CAGGATTATGATGACGATGAGCATTGGAGCTGA

Peptide Sequence

PEP ID	Os04t0610200-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:30927631:30934094:1 gene:Os04g0610200 transcript:Os04t0610200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0152L12.4 protein. (Os04t0610200-01)
Sequence	MAPPPGILEVRCAGCGETLEVEHGLTEFACPDCGMAQALPPELMPPRPRRALPLPGRASV VPSAVPAPATATAAAPPTRVSCGGCAAVLSVPHGPGRFSCPLCGAEIAPPPPLAAVVSVV APPAAIPITSNRPAMTSEVLNGNSNQPTLAGQVQKSIIPEQYYKHSFREESFSSFRVDSR TQIPDVGRLQNECVNPSADREESRTEPPNGTMTKPGKKKTTSASGPKSHPAGKLQEEHIS KAIHASRAQGMPSNSVGGGFHNGMIAVHNKQKTGHIAAPSAIEHEQINTLHQVCDKQQPG ENSSDLVHVEQVQVACKAVQNNKKGTKYTKGNQKRQGKSPLNYSTELPHLRRSQRLTKGS PDPIDIEPIHRIYASPNQNQSETPPIERAIDDTYHISPNQHRYPQSVSNKLDNADATTPA LNHSMQQKERIPQCYSQMYSPESRWVLPNRSSNSCHEHEMPNESFDGIVQLDSSDDEVHS IPLENQNQDMDGQLEQQACAGKNLSEHGRQKNGFIGSSGDAKHHGGLSSGMGTRHQMNLA ASCSRLAVLLPVADATPLPTISSPSSFEKLPVNCSSPTTPHQHHQPSPIYSQDARNGDML SASVSKSSKKRRGRAPAVLMEPRKEADRPVLTPCGAENWTVHPSCLKVTTTLSLLIKQNY PGTYVSVGTNGQPCELAVFHWHQCPSDIRDTVLDEFLKRYKWSPGQEEECRKIFDRKAVR QLVNLFCYEKQRVRDLLAKKAKRSSTVVRASRSLEEGDGREDSEEQHGDESVLVLELDDP LNWKPFVPEWMQPKWWEKLCDHWAKDEVMKVSYQKRKNRNAGNPPCNASGSQSIAMHQQF TSIDNGRKLVSDIDPSTKINSDKGGIIDKKILRTEDTTYEHTAEAREPVQEHMGGCKRGR YYCDTGVRKKVQTDSLPKSSPGCSSNHGQGQPPMFTHEQVQQMINQALQGLNETWEKKFL SLEQNMRSMSKSRIILDGPKKGSLAAVAGDKRCQLSCQDTLDSVDGEKDPAGEGEDDPEN QDYDDDEHWS

Transcript Sequence

Transcript ID	Os04t0610200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:30927631:30934094:1 gene:Os04g0610200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0152L12.4 protein. (Os04t0610200-01)
Sequence	GCGCGAAGAGAAAAAAGGGGGAAAAAAAACCAAAACCCTAGCGATCGCTTCCCCCGATCC ATGGCGCCGCCGCCGGGGATCCTCGAGGTGCGGTGCGCCGGGTGCGGCGAGACCCTGGAG GTGGAGCACGGCCTGACGGAGTTCGCCTGCCCCGACTGCGGCATGGCCCAGGCGCTCCCG CCGGAGCTCATGCCGCCGCGCCCCCGCCGCGCGCTCCCGCTCCCCGGGCGCGCGAGCGTC GTCCCCTCCGCCGTGCCCGCCCCCGCCACCGCCACCGCCGCCGCCCCTCCCACGCGCGTC TCGTGCGGGGGATGCGCGGCCGTCCTCAGCGTGCCGCACGGCCCGGGGCGGTTTTCGTGC CCGCTCTGCGGCGCCGAGATCGCGCCTCCCCCTCCCCTCGCGGCCGTCGTCTCAGTCGTT GCCCCGCCGGCAGCGATCCCGATTACCTCCAATCGGCCGGCGATGACCTCCGAGGTGCTG AATGGAAATTCAAATCAGCCAACTCTTGCTGGACAGGTTCAGAAGTCCATTATTCCAGAG CAATACTACAAGCATTCTTTTAGAGAGGAGTCATTCAGTTCATTCAGAGTTGACTCTAGG ACACAAATTCCTGATGTAGGGAGGTTACAAAACGAGTGTGTTAATCCTTCAGCTGATCGA GAGGAGTCACGCACAGAACCACCTAACGGGACTATGACCAAGCCTGGCAAGAAGAAAACT ACATCTGCTTCTGGTCCAAAATCTCATCCAGCTGGAAAGTTGCAGGAAGAGCATATTAGT AAGGCCATCCATGCATCAAGGGCTCAGGGAATGCCTTCAAACTCTGTAGGAGGAGGATTT CACAATGGCATGATTGCAGTGCACAACAAGCAGAAAACTGGGCATATAGCTGCCCCTAGT GCTATCGAGCATGAGCAGATAAACACTCTCCATCAAGTTTGTGACAAGCAGCAGCCTGGC GAAAATTCCAGTGATTTGGTTCATGTGGAGCAGGTACAGGTGGCATGCAAAGCAGTACAA AACAATAAAAAAGGTACCAAGTATACAAAAGGAAATCAAAAGAGGCAAGGTAAGAGTCCG TTGAATTATTCAACTGAGTTGCCTCATCTTAGGCGTAGTCAGCGCTTAACAAAGGGTTCG CCAGACCCTATTGATATTGAGCCTATCCATAGGATATATGCTTCCCCAAACCAAAATCAA TCAGAAACTCCACCAATTGAGAGGGCGATAGATGATACTTACCATATTTCACCAAACCAG CACCGGTATCCTCAATCAGTCTCTAATAAGTTGGACAATGCTGATGCAACTACTCCTGCT TTGAATCATAGTATGCAACAAAAGGAGAGAATTCCCCAGTGCTACAGCCAGATGTACTCT CCAGAAAGTAGGTGGGTACTTCCAAATCGTAGTTCTAATTCATGTCATGAGCATGAGATG CCTAATGAAAGCTTTGATGGGATTGTCCAACTCGATAGTAGTGATGATGAAGTGCATTCA ATTCCATTAGAGAACCAAAATCAGGATATGGATGGCCAACTAGAACAACAAGCTTGTGCT GGCAAGAACCTTTCAGAGCATGGCAGGCAAAAGAATGGCTTCATTGGTTCTTCAGGTGAT GCCAAACATCATGGGGGCTTGTCCTCTGGAATGGGAACACGCCACCAGATGAATTTGGCT GCTTCATGCAGCCGCCTTGCTGTTTTATTGCCAGTTGCGGATGCTACTCCATTGCCCACC ATCAGCTCACCTTCTTCATTTGAAAAGCTACCAGTTAACTGTAGCAGTCCAACAACACCG CACCAGCACCACCAACCATCCCCCATCTATTCTCAGGATGCCCGGAATGGTGATATGCTG TCAGCATCTGTTAGTAAATCATCAAAAAAGCGCAGGGGCCGTGCCCCTGCGGTACTAATG GAACCACGCAAAGAAGCTGACAGGCCTGTGCTGACACCTTGTGGTGCAGAAAACTGGACT GTGCATCCATCCTGTTTGAAGGTGACAACCACCCTATCCCTTCTTATCAAGCAGAACTAT CCTGGAACCTATGTTTCAGTGGGTACCAATGGCCAACCCTGTGAGCTTGCGGTTTTCCAT TGGCACCAATGTCCTTCAGATATAAGAGATACTGTATTGGATGAATTCCTTAAACGCTAC AAGTGGTCCCCTGGCCAGGAAGAGGAGTGTCGAAAGATCTTTGACCGTAAAGCAGTTAGA CAATTAGTTAACCTCTTTTGCTACGAGAAGCAAAGGGTCAGAGATTTGCTGGCAAAAAAA GCCAAAAGATCTTCGACGGTTGTTAGGGCCAGTAGGTCGTTAGAAGAGGGCGATGGTAGG GAAGATTCAGAGGAGCAGCATGGAGATGAGTCTGTTCTGGTGCTTGAGCTTGATGATCCG CTTAACTGGAAACCATTCGTCCCTGAATGGATGCAACCAAAATGGTGGGAGAAGTTGTGT GACCATTGGGCGAAAGATGAAGTTATGAAGGTCTCTTACCAAAAAAGGAAGAACCGGAAT GCAGGAAACCCCCCCTGTAATGCTTCAGGCTCACAGAGCATAGCAATGCATCAGCAGTTT ACGAGCATTGACAATGGCAGAAAGCTGGTATCTGATATTGATCCATCCACCAAGATTAAC AGTGATAAAGGAGGGATTATTGACAAGAAGATATTGCGAACTGAGGATACCACGTATGAA CATACTGCAGAGGCCAGAGAGCCTGTACAGGAACATATGGGAGGCTGCAAGCGTGGGAGA TACTATTGCGACACTGGTGTTAGGAAGAAGGTCCAGACTGATTCTTTGCCAAAGTCCTCC CCTGGTTGTTCCAGCAATCACGGACAAGGACAACCTCCGATGTTCACACATGAACAGGTG CAACAGATGATTAATCAAGCTCTACAAGGGTTAAATGAGACATGGGAGAAGAAGTTTTTG TCTTTGGAGCAAAACATGCGGAGCATGTCAAAATCACGCATTATTCTGGATGGTCCGAAA AAGGGGTCATTGGCGGCTGTTGCAGGGGATAAGCGATGCCAGCTGTCATGCCAGGACACA TTAGATTCCGTGGACGGTGAAAAGGATCCAGCGGGGGAAGGCGAGGACGACCCCGAGAAC CAGGATTATGATGACGATGAGCATTGGAGCTGAGCCAAAACGTGAGCTTGTGGTGGCACC AGATTTTCGTCTCCTCGGAGCACTTCCCGGTTGCCAGCGTGTAAATCATGTACAGATTTC CAGCATCTGAAAGCGGTTGTCTCGATCGCTTGCTGGTCGCTTCCCCATACGGCTTCGGAG