Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0607000-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:30688131:30689790:-1 gene:Os04g0607000 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP fibrillin family protein. (Os04t0607000-02)
Sequence

ATGTCGGCTTCTGCGGCGCCCACGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCC
GCCGCTCTCCGGCGGCCTCGCCGCCGGTGCGCCACGCCCGTCCGATGCTCCCTCGCCGCA
GCGCCGGGTCTCCGGGCGCCGCCTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGA
ACTGACCGTGGAGTTTTGCTGCCCAAAGATGGGCATCAGGAAGTTGCTGATGTCGCACTA
CAGCTTGCCAAGTACTGCATAGACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGG
GAGGTTGTGTACTGCTCAGTACCGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGC
CGCCTGATATTCAAAACCGATGAGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAA
AACAAGGTGTCCTTCTCTGTCTTTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTG
AATGTGCTGGATGGTAAGTGGATTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGC
TCCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGAC
GAGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGA

Peptide Sequence

PEP ID

Os04t0607000-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:30688131:30689790:-1 gene:Os04g0607000 transcript:Os04t0607000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP fibrillin family protein. (Os04t0607000-02)
Sequence

MSASAAPTHIRFSSAAPPSAAALRRPRRRCATPVRCSLAAAPGLRAPPELIDSILSKVKG
TDRGVLLPKDGHQEVADVALQLAKYCIDDPVKSPLIFGEWEVVYCSVPTSPGGLYRTPLG
RLIFKTDEMAQVVQAPDVVKNKVSFSVFGFDGAVSLKGKLNVLDGKWIQVIFEPPEVKVG
SLGFQYGGESEVKLEITYVDEKIRLGKGSRGSLFVFMRR

Transcript Sequence

Transcript ID

Os04t0607000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:30688131:30689790:-1 gene:Os04g0607000 gene_biotype:protein_coding transcript_biotype:protein_coding description:PAP fibrillin family protein. (Os04t0607000-02)
Sequence

AGCTATCAGCTTATCACCACACACAGACACAGAAGGAAATGTCGGCTTCTGCGGCGCCCA
CGCACATCCGCTTCTCCTCCGCCGCACCTCCATCGGCCGCCGCTCTCCGGCGGCCTCGCC
GCCGGTGCGCCACGCCCGTCCGATGCTCCCTCGCCGCAGCGCCGGGTCTCCGGGCGCCGC
CTGAGCTCATCGACTCCATCCTCTCCAAGGTGAAGGGAACTGACCGTGGAGTTTTGCTGC
CCAAAGATGGGCATCAGGAAGTTGCTGATGTCGCACTACAGCTTGCCAAGTACTGCATAG
ACGATCCTGTCAAGTCTCCACTAATATTTGGAGAGTGGGAGGTTGTGTACTGCTCAGTAC
CGACATCACCGGGAGGGCTCTACCGGACTCCTCTCGGCCGCCTGATATTCAAAACCGATG
AGATGGCTCAGGTGGTGCAAGCGCCTGATGTTGTAAAAAACAAGGTGTCCTTCTCTGTCT
TTGGTTTCGATGGTGCGGTATCTCTGAAAGGCAAGCTGAATGTGCTGGATGGTAAGTGGA
TTCAGGTCATATTCGAGCCACCAGAAGTGAAGGTAGGCTCCCTGGGGTTTCAGTATGGTG
GCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACGAGAAGATCAGGCTGGGAAAAG
GATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGTT
TGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACA
ATATGTTTGTGTGTACAATACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGT
AGTGTTCTTCAGACCTCCGAATTAGAGATTGTATTGTCATTTCCAATCAAAATGACAAAA
TGTTTGTAGTTTTTGTGATTAATGTGATGGTTAAATTGTCCAGACTAATGAGCATGGTTA
TGGATTTTTGGTG