Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0606500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:30642129:30645845:-1 gene:Os04g0606500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0113I13.4 protein. (Os04t0606500-01)
Sequence

ATGGGTTCGAGGTTTCCATCGCATCAGCTTAGCAATGGCCTGTATGTGTCTGGCCGACCT
GAGCAACCGAAGGAGAAGGCCCCAACCATTTGTTCCACTGCCATGCCATACACTGGTGGT
GATATAAAAAAATCTGGAGAGCTTGGGAAGATGTTTGAGCTCCACGCTGTCAAGTCAAGA
AAATCTGGTCCACTGAGCAATGCACCTTCGAGGAATGCGTCATTTGGAGGTGCTGCATCA
AACTCTGGACCTGTCCCTAATGCCGGGGATCGGTCCAACTACTCTGGTTCTCTATCATCT
TCAGTTCCTGGTGCTAGTGGATCAGCAAGAGCAAAATCTAGCTCCGGACCTCTCAATAAG
CATGGAGAACCAGTAAAGAGATCATCAGGTCCTCAGTCTGGAGGAGTGACCCCAATGGCG
CGGCAGAATTCTGGCCCTCTCCCTCCTATGCTTCCTACAACTGGACTTATCACATCTGGG
CCTATCACATCGGGGCCACTGAATTCGTCTGGTGCTCAAAGGAAAGTATCTGGACCTCTT
GATTCTGCTGCATCCAAGAAGACGCGGGCCACATCCTTTTCTCATAACCAGGCTGTTACT
AAAATCACCACAGAAGACAGTTACTCAATCACAGGAAGCCTTTCGAAGCTAATACTCGGG
GCAGTGGGTGTGCTCTTTGTGTTGGGGCTCATAGCAGGCATCTTGATTCTTAGTGCTGTT
CACAATGCAATTCTTCTGATAGTTGTTCTGGTGCTGTTTGGTTTTGTTGCTGCACTTTTC
ATTTGGAATGCTTGCTGGGCAAGGAGAGGTGTGATTGGGTTTGTGGATCGCTATTCTGAT
GCTGATCTAAGAACTGCTAAAGATGGACAGTATATCAAGGTTACAGGGGTTGTTACTTGT
GGAAATTTCCCTCTCGAGTCCTCGTATCAAAGGGTTCCAAGATGTGTGTACACTTCAACT
ACCTTACATGAATATAGGGGTTGGGACTCAAAAGCTGCCAACACCCAGCATCACCGGTTT
ACCTGGGGATTACGGTCAATGGAGCAACACGCAGTGGATTTCTACATCTCAGATTTTCAA
TCTGGGCTCCGGGCATTGGTGAAAGCAGGATATGGTGCTCGAGTGACCCCATTCGTGGAT
GAATCTGTCATTATTGACATTGATCCTGACAACAAAGACATGTCCCCTGAATTTCGAAGA
TGGCTGCGGGAAAGGAATCTCTCAAGTGATGATCGGATAATGCGCCTAAAAGAAGGATAC
ATTAAGGAAGGCAGCACCGTGAGTGTGATGGGGGTTGTTCAAAAGAATGACAACGTGTTG
ATGATTGTTCCTCCACCAGAGCCCATCTCTACTGGTTGCCAGTGGGCCAAGTGTGTCCTC
CCAAGGGACCTTTATGGATTAGTCCTGAGATGTGAAGATACCTCAAATATCGATGTCATA
GCGGTTTAG

Peptide Sequence

PEP ID

Os04t0606500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:30642129:30645845:-1 gene:Os04g0606500 transcript:Os04t0606500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0113I13.4 protein. (Os04t0606500-01)
Sequence

MGSRFPSHQLSNGLYVSGRPEQPKEKAPTICSTAMPYTGGDIKKSGELGKMFELHAVKSR
KSGPLSNAPSRNASFGGAASNSGPVPNAGDRSNYSGSLSSSVPGASGSARAKSSSGPLNK
HGEPVKRSSGPQSGGVTPMARQNSGPLPPMLPTTGLITSGPITSGPLNSSGAQRKVSGPL
DSAASKKTRATSFSHNQAVTKITTEDSYSITGSLSKLILGAVGVLFVLGLIAGILILSAV
HNAILLIVVLVLFGFVAALFIWNACWARRGVIGFVDRYSDADLRTAKDGQYIKVTGVVTC
GNFPLESSYQRVPRCVYTSTTLHEYRGWDSKAANTQHHRFTWGLRSMEQHAVDFYISDFQ
SGLRALVKAGYGARVTPFVDESVIIDIDPDNKDMSPEFRRWLRERNLSSDDRIMRLKEGY
IKEGSTVSVMGVVQKNDNVLMIVPPPEPISTGCQWAKCVLPRDLYGLVLRCEDTSNIDVI
AV

Transcript Sequence

Transcript ID

Os04t0606500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:30642129:30645845:-1 gene:Os04g0606500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0113I13.4 protein. (Os04t0606500-01)
Sequence

CTCCTCCTCTACTCCCCCCCCCCCCCTCCCCCCTCCCCTTCTTCCTCTCTGTCTCCAGCG
CACGCACGCACGACCACCTCGCCTCCTCTCCTCTCCCCTCCCCTCCCCCACCTCGCCTCG
CCTCCACGCGCGCGACGCGGCCGGCGACGGCGAGCCGCACGGCGCGTGGGCGTGCCTCTC
CTCAGCCGGCGGCTAGCCCTCTCCTCGCGCGGGGGCGGCGGCGGCGGCGGTTGTTGCTGG
CCTCATTCCACCGCCATCCCTCCTCCGTGTCTCGGGCTCGACTCGGTGGTGAAGGTCAGG
TGCTGATGCAAGATATAGGTTGTTCTATGAGAAGGATAGCTGTGCACATCAAGACCCAAA
TATAATCTCACTTGGTTGTACTATAGTGGTGGTTGAACACTAAGATATAGCTTATTCTGT
TGTTTCAAAAACATGGGTTCGAGGTTTCCATCGCATCAGCTTAGCAATGGCCTGTATGTG
TCTGGCCGACCTGAGCAACCGAAGGAGAAGGCCCCAACCATTTGTTCCACTGCCATGCCA
TACACTGGTGGTGATATAAAAAAATCTGGAGAGCTTGGGAAGATGTTTGAGCTCCACGCT
GTCAAGTCAAGAAAATCTGGTCCACTGAGCAATGCACCTTCGAGGAATGCGTCATTTGGA
GGTGCTGCATCAAACTCTGGACCTGTCCCTAATGCCGGGGATCGGTCCAACTACTCTGGT
TCTCTATCATCTTCAGTTCCTGGTGCTAGTGGATCAGCAAGAGCAAAATCTAGCTCCGGA
CCTCTCAATAAGCATGGAGAACCAGTAAAGAGATCATCAGGTCCTCAGTCTGGAGGAGTG
ACCCCAATGGCGCGGCAGAATTCTGGCCCTCTCCCTCCTATGCTTCCTACAACTGGACTT
ATCACATCTGGGCCTATCACATCGGGGCCACTGAATTCGTCTGGTGCTCAAAGGAAAGTA
TCTGGACCTCTTGATTCTGCTGCATCCAAGAAGACGCGGGCCACATCCTTTTCTCATAAC
CAGGCTGTTACTAAAATCACCACAGAAGACAGTTACTCAATCACAGGAAGCCTTTCGAAG
CTAATACTCGGGGCAGTGGGTGTGCTCTTTGTGTTGGGGCTCATAGCAGGCATCTTGATT
CTTAGTGCTGTTCACAATGCAATTCTTCTGATAGTTGTTCTGGTGCTGTTTGGTTTTGTT
GCTGCACTTTTCATTTGGAATGCTTGCTGGGCAAGGAGAGGTGTGATTGGGTTTGTGGAT
CGCTATTCTGATGCTGATCTAAGAACTGCTAAAGATGGACAGTATATCAAGGTTACAGGG
GTTGTTACTTGTGGAAATTTCCCTCTCGAGTCCTCGTATCAAAGGGTTCCAAGATGTGTG
TACACTTCAACTACCTTACATGAATATAGGGGTTGGGACTCAAAAGCTGCCAACACCCAG
CATCACCGGTTTACCTGGGGATTACGGTCAATGGAGCAACACGCAGTGGATTTCTACATC
TCAGATTTTCAATCTGGGCTCCGGGCATTGGTGAAAGCAGGATATGGTGCTCGAGTGACC
CCATTCGTGGATGAATCTGTCATTATTGACATTGATCCTGACAACAAAGACATGTCCCCT
GAATTTCGAAGATGGCTGCGGGAAAGGAATCTCTCAAGTGATGATCGGATAATGCGCCTA
AAAGAAGGATACATTAAGGAAGGCAGCACCGTGAGTGTGATGGGGGTTGTTCAAAAGAAT
GACAACGTGTTGATGATTGTTCCTCCACCAGAGCCCATCTCTACTGGTTGCCAGTGGGCC
AAGTGTGTCCTCCCAAGGGACCTTTATGGATTAGTCCTGAGATGTGAAGATACCTCAAAT
ATCGATGTCATAGCGGTTTAGCAAGCTGGGTGTTGGAACTTAGAAGAGCTGCTGCTGAAG
AAGTGCTTTTTAAATGTTTTGACTTGGAGTTTGTTTCGTGGAATGTTAGAATTGAGAAAA
ATGTACAAATGTTGGGGATGATTAAGGTTAGTAAAAATAGATGTTAAGCTGGGGTTTGGA
TGTATAGTCTTTTCTTGTATTTTGTCCTTTCTTTTCACCTATTCCTCGGTTATGAGCACT
GAATGCTTGTCTTGTGAAATATGATGGCTTGGTTATTACTACCATCCAGCTGTTTGAAGA
CTTAGTGAAATTGGGTAAACAACTATATATGTTTTTTTCAACTAGATGTATCACTGCTGT
TAAAGCC