Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0604000-02
CDS Infomation	cds chromosome:IRGSP-1.0:4:30463872:30472877:-1 gene:Os04g0604000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN4, VILLIN 4 description:Similar to Actin filament bundling protein P-115-ABP. (Os04t0604000-01);Similar to Actin filament bundling protein P-115-ABP. (Os04t0604000-02)
Sequence	ATGTCAATTTCTATGAAAGATGTAGATCCGGCTTTCCGTGGAGTTGGACAAAAGGATGGT TTGGAGGTATGGCGTATTGAAAACTTCAAGCCTGTTCCCGTGCCAACATCTTCACACGGA AAATTTTACATGGGTGATTCATATATCATCTTGAAGACGACAGCCTTGAAAAATGGTTCA TTTCGCCATGATCTCCACTACTGGCTTGGAAAGGATACTAGTCAGGACGAAGCTGGAACT GCTGCAATTCTAACTGTGGAGCTTGATGCTGCCCTTGGAGGGCGTGCTGTCCAGTACAGG GAAGTACAAGGCGGTGAAACTGAAAAGCTTCTCTCCTATTTTAGACCATGCATCATGCCA CAGCCAGGAGGGGTAGCTTCTGGGTTCAATCATGTAGAGGTCAATCAGCAAGATCATGTT ACCCGCTTATATGTGTGCCAAGGAAAGCATGTTGTTCATGTTAAAGAGGTTCCTTTTGTT CGTTCATCCCTTAATCACGAGGACATATTCATTTTGGATACCGCGAACAAAATTTTCCAG TTCAATGGCTCTAACTCATGCATTCAAGAGAGAGCAAAAGCTCTTGAAGTTGTGCAATAT ATCAAAGATACTTTCCATGAGGGCAAGTGCGAAGTTGCAGCTGTTGAGGATGGAAAGTTG ATGGCCGATACTGAAGCTGGTGAATTTTGGGGTTTGTTTGGTGGTTTTGCTCCTCTCCCA AAGAAGACATCTTCAGAGGACAATGGGGATGATAAGGAAACTGTGACCAAATTGCTATGT TTTAACCAAGGAACGCTGGAGCATATTAGTTTTGAATCTTTGGAGCATGAGTTACTTGAG ACAAACAAATGCTACTTGTTGGACTGTGGAGCTGAAATGTATGTTTGGATGGGCAGAGGT ACTTCTTTGCAAGTGAGAAAGGGTGCAAGTGAAGCTGCTGAGAAATTGCTCATTGATGAG AACCGAAAAGGATCAAATGTTATCAAAGTGATTGAGGGATTCGAAACAATCATGTTCAAG TCAAAATTTAACAAGTGGCCGCCTACTCCTGATTTGAAGCTGTCATCTGAGGATGGCCGA GGCAAAGTGGCAGCTCTACTCAGAAGTCAAGGATTGGATGTTAAAGGATTGATGAAGGCT GCTCCTGAAGAAGAAGAACCCCAACCTTATATTGATTGCACTGGTCATTTACAGGTCTGG CGAGTAAATGGCGATGGCAAGACTCTTCTTTCATCTTCTGATCAATCAAAACTTTACACC GGAGATTGCTACATTTTTCAATACACATACACTGGAGATGATAAGGAGGAATGTCTTATT GGAACTTGGTTTGGGAAGAAGAGTGTTGAGGAGGACAGAACATCGGCAATTTCACTAGCT AGCAAGATGTTTCAGGCTGCAAAATTCCAGGCTGCCCAGGCTCGCCTCTATGAAGGGAAA GAACCGATTCAATTTTTCGTCATATTTCAGAGTCTTCAAGTTTTTAAGGGTGGACTTAGC TCTGGATACAAGAACTTTATTGCTGTAAATGGTACCGATGACGACACTTACGTTGAAGGT GGGCTTGCTCTCTTCCGGATTCAAGGCTCAGGATCAGAAAACATGCAAGCAATTCAAGTT GATGCAGTGTCTTCGTCATTAAATTCATCCTACTGCTACATTCTACACAATGGAAACACT GTGTTCACATGGACTGGGAACCTTACAACCTCACTGGATAATGACTTGGTTGAGAGACAG CTAGATGTAATTAAGCCAGATCTGCCATCCAGGTCACAAAAGGAGGGGAGAGAAACCGAC CAATTCTGGGAACTCTTAGGTGGAAAATGCAAGTATTCAAACAAAAAAATAGGAAAAGAA AATGAAAGCGACCCTCATCTTTTCTCATGTATCTTATCCAAGGAAAATCTAAAGGTCAAG GAAATACACCACTTTACTCAGGATGACCTGATGGCAGAAGATATTTTCGTTCTAGACTGC CGCACCGACTTGTTTGTTTGGGTTGGACAGGAGGTGGATGCCAAATTGAGATCACAAGCG ATGGACATCGGTGAGAAATTTCTTCTACATGATTTCCTTATGGAAAATCTCTCGCAAGAC ACACCAATTTTTATTGTTACAGAAGGAAGTGAGCCACAGTTTTTTACTAGGTTCTTCACT TGGGACTCAGCAAAATCGCTGATGCATGGCAGTTCATACCAGAGGAAGCTTGCAATAGTA AAGGGTGGAGCAACTCCATCGCTTGATAAACCTAAAAGGCGAACACCAGCGTTTTCAGGA AGGAACGCAGGACAAGATAAATCTCAGCAGCGCACAAGAAGTATGTCCCACAGCCCAGAA CGTCACCGTATTCGAGGAAGATCTCCAGCTTTCACCGCAATAGCTTCTGCCTTTGAGAAC CCAAGTACCCGGTATCTTTCCACCCCTCCCCCTGCTGTCAAGAAGCTTTTCCCAAGATCC GGAGGGTCTGAATTGCCAAAGACATCATCCAAACAATCAGCTATCAATGCTCTCACCAGT GCTTTCGAGGGTCCTACGAAAAGTACAATACCTAAGTCTGTAAAAGCGAGCCCCGAGGCA GAGAAGGCAATACAGGAGGAAGGCTCAACGATCGGTGAAAGTGAAAACGAGCCAGAAGAT GATGAGAACAGCACAATCTACCCATATGAACGTTTGACCACCACATCTGATGATCCTGCT CCTGACATTGATGTTACCAAGCGAGAGGTCTACTTATCATCAGTTGAGTTCACAGAGAAG TTTGGCATGACAAGGGCATCATTCAAAAACCTTCCAAAATGGAAGCAAAACAGGCTAAAG TCTGATCTCCAGCTCTTTTAG

Peptide Sequence

PEP ID	Os04t0604000-02
PEP Infomation	pep chromosome:IRGSP-1.0:4:30463872:30472877:-1 gene:Os04g0604000 transcript:Os04t0604000-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN4, VILLIN 4 description:Similar to Actin filament bundling protein P-115-ABP. (Os04t0604000-01);Similar to Actin filament bundling protein P-115-ABP. (Os04t0604000-02)
Sequence	MSISMKDVDPAFRGVGQKDGLEVWRIENFKPVPVPTSSHGKFYMGDSYIILKTTALKNGS FRHDLHYWLGKDTSQDEAGTAAILTVELDAALGGRAVQYREVQGGETEKLLSYFRPCIMP QPGGVASGFNHVEVNQQDHVTRLYVCQGKHVVHVKEVPFVRSSLNHEDIFILDTANKIFQ FNGSNSCIQERAKALEVVQYIKDTFHEGKCEVAAVEDGKLMADTEAGEFWGLFGGFAPLP KKTSSEDNGDDKETVTKLLCFNQGTLEHISFESLEHELLETNKCYLLDCGAEMYVWMGRG TSLQVRKGASEAAEKLLIDENRKGSNVIKVIEGFETIMFKSKFNKWPPTPDLKLSSEDGR GKVAALLRSQGLDVKGLMKAAPEEEEPQPYIDCTGHLQVWRVNGDGKTLLSSSDQSKLYT GDCYIFQYTYTGDDKEECLIGTWFGKKSVEEDRTSAISLASKMFQAAKFQAAQARLYEGK EPIQFFVIFQSLQVFKGGLSSGYKNFIAVNGTDDDTYVEGGLALFRIQGSGSENMQAIQV DAVSSSLNSSYCYILHNGNTVFTWTGNLTTSLDNDLVERQLDVIKPDLPSRSQKEGRETD QFWELLGGKCKYSNKKIGKENESDPHLFSCILSKENLKVKEIHHFTQDDLMAEDIFVLDC RTDLFVWVGQEVDAKLRSQAMDIGEKFLLHDFLMENLSQDTPIFIVTEGSEPQFFTRFFT WDSAKSLMHGSSYQRKLAIVKGGATPSLDKPKRRTPAFSGRNAGQDKSQQRTRSMSHSPE RHRIRGRSPAFTAIASAFENPSTRYLSTPPPAVKKLFPRSGGSELPKTSSKQSAINALTS AFEGPTKSTIPKSVKASPEAEKAIQEEGSTIGESENEPEDDENSTIYPYERLTTTSDDPA PDIDVTKREVYLSSVEFTEKFGMTRASFKNLPKWKQNRLKSDLQLF

Transcript Sequence

Transcript ID	Os04t0604000-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:30463872:30472877:-1 gene:Os04g0604000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VILLIN4, VILLIN 4 description:Similar to Actin filament bundling protein P-115-ABP. (Os04t0604000-01);Similar to Actin filament bundling protein P-115-ABP. (Os04t0604000-02)
Sequence	ATCTGCATTTGTGTTCTTTTATTTTTCATTCAATGACATTTTTTATGTTCCTATGATCCT TTTGTGTTCTCGGGTGTAATTTGTTGCCAACTATATCATAATGAGCTTTTGTTGGTGTTT GGGTGACCATTGTGATGTTTGAACTATGATCATATCATTCATCTTTTTCTTAAAAAAAAA AACTTGTTTGCAGTTCCAGCATGATGTTAGCGTCGTTTTGAGACAAAATCAGGAAAGGCT CTTTCACAACATCAAGCATGTCAATTTCTATGAAAGATGTAGATCCGGCTTTCCGTGGAG TTGGACAAAAGGATGGTTTGGAGGTATGGCGTATTGAAAACTTCAAGCCTGTTCCCGTGC CAACATCTTCACACGGAAAATTTTACATGGGTGATTCATATATCATCTTGAAGACGACAG CCTTGAAAAATGGTTCATTTCGCCATGATCTCCACTACTGGCTTGGAAAGGATACTAGTC AGGACGAAGCTGGAACTGCTGCAATTCTAACTGTGGAGCTTGATGCTGCCCTTGGAGGGC GTGCTGTCCAGTACAGGGAAGTACAAGGCGGTGAAACTGAAAAGCTTCTCTCCTATTTTA GACCATGCATCATGCCACAGCCAGGAGGGGTAGCTTCTGGGTTCAATCATGTAGAGGTCA ATCAGCAAGATCATGTTACCCGCTTATATGTGTGCCAAGGAAAGCATGTTGTTCATGTTA AAGAGGTTCCTTTTGTTCGTTCATCCCTTAATCACGAGGACATATTCATTTTGGATACCG CGAACAAAATTTTCCAGTTCAATGGCTCTAACTCATGCATTCAAGAGAGAGCAAAAGCTC TTGAAGTTGTGCAATATATCAAAGATACTTTCCATGAGGGCAAGTGCGAAGTTGCAGCTG TTGAGGATGGAAAGTTGATGGCCGATACTGAAGCTGGTGAATTTTGGGGTTTGTTTGGTG GTTTTGCTCCTCTCCCAAAGAAGACATCTTCAGAGGACAATGGGGATGATAAGGAAACTG TGACCAAATTGCTATGTTTTAACCAAGGAACGCTGGAGCATATTAGTTTTGAATCTTTGG AGCATGAGTTACTTGAGACAAACAAATGCTACTTGTTGGACTGTGGAGCTGAAATGTATG TTTGGATGGGCAGAGGTACTTCTTTGCAAGTGAGAAAGGGTGCAAGTGAAGCTGCTGAGA AATTGCTCATTGATGAGAACCGAAAAGGATCAAATGTTATCAAAGTGATTGAGGGATTCG AAACAATCATGTTCAAGTCAAAATTTAACAAGTGGCCGCCTACTCCTGATTTGAAGCTGT CATCTGAGGATGGCCGAGGCAAAGTGGCAGCTCTACTCAGAAGTCAAGGATTGGATGTTA AAGGATTGATGAAGGCTGCTCCTGAAGAAGAAGAACCCCAACCTTATATTGATTGCACTG GTCATTTACAGGTCTGGCGAGTAAATGGCGATGGCAAGACTCTTCTTTCATCTTCTGATC AATCAAAACTTTACACCGGAGATTGCTACATTTTTCAATACACATACACTGGAGATGATA AGGAGGAATGTCTTATTGGAACTTGGTTTGGGAAGAAGAGTGTTGAGGAGGACAGAACAT CGGCAATTTCACTAGCTAGCAAGATGTTTCAGGCTGCAAAATTCCAGGCTGCCCAGGCTC GCCTCTATGAAGGGAAAGAACCGATTCAATTTTTCGTCATATTTCAGAGTCTTCAAGTTT TTAAGGGTGGACTTAGCTCTGGATACAAGAACTTTATTGCTGTAAATGGTACCGATGACG ACACTTACGTTGAAGGTGGGCTTGCTCTCTTCCGGATTCAAGGCTCAGGATCAGAAAACA TGCAAGCAATTCAAGTTGATGCAGTGTCTTCGTCATTAAATTCATCCTACTGCTACATTC TACACAATGGAAACACTGTGTTCACATGGACTGGGAACCTTACAACCTCACTGGATAATG ACTTGGTTGAGAGACAGCTAGATGTAATTAAGCCAGATCTGCCATCCAGGTCACAAAAGG AGGGGAGAGAAACCGACCAATTCTGGGAACTCTTAGGTGGAAAATGCAAGTATTCAAACA AAAAAATAGGAAAAGAAAATGAAAGCGACCCTCATCTTTTCTCATGTATCTTATCCAAGG AAAATCTAAAGGTCAAGGAAATACACCACTTTACTCAGGATGACCTGATGGCAGAAGATA TTTTCGTTCTAGACTGCCGCACCGACTTGTTTGTTTGGGTTGGACAGGAGGTGGATGCCA AATTGAGATCACAAGCGATGGACATCGGTGAGAAATTTCTTCTACATGATTTCCTTATGG AAAATCTCTCGCAAGACACACCAATTTTTATTGTTACAGAAGGAAGTGAGCCACAGTTTT TTACTAGGTTCTTCACTTGGGACTCAGCAAAATCGCTGATGCATGGCAGTTCATACCAGA GGAAGCTTGCAATAGTAAAGGGTGGAGCAACTCCATCGCTTGATAAACCTAAAAGGCGAA CACCAGCGTTTTCAGGAAGGAACGCAGGACAAGATAAATCTCAGCAGCGCACAAGAAGTA TGTCCCACAGCCCAGAACGTCACCGTATTCGAGGAAGATCTCCAGCTTTCACCGCAATAG CTTCTGCCTTTGAGAACCCAAGTACCCGGTATCTTTCCACCCCTCCCCCTGCTGTCAAGA AGCTTTTCCCAAGATCCGGAGGGTCTGAATTGCCAAAGACATCATCCAAACAATCAGCTA TCAATGCTCTCACCAGTGCTTTCGAGGGTCCTACGAAAAGTACAATACCTAAGTCTGTAA AAGCGAGCCCCGAGGCAGAGAAGGCAATACAGGAGGAAGGCTCAACGATCGGTGAAAGTG AAAACGAGCCAGAAGATGATGAGAACAGCACAATCTACCCATATGAACGTTTGACCACCA CATCTGATGATCCTGCTCCTGACATTGATGTTACCAAGCGAGAGGTCTACTTATCATCAG TTGAGTTCACAGAGAAGTTTGGCATGACAAGGGCATCATTCAAAAACCTTCCAAAATGGA AGCAAAACAGGCTAAAGTCTGATCTCCAGCTCTTTTAGCTCAACTCTGAGGAACAGCCCC TTGTCCTCGCCTTGAAGGCATCACCCATTTTTGAGGGCACGCAATTTCCGTGCCATTCTC GAGTTCTTCTCTTCACCTATTTTGGTCTGCTATTGCTCTAGGATCACCCTGCTCTTTCTG CAGTAGCAAGTAGGTCTTTTGGTAGTGTTTTTCTTTTCCCTTTATTGATATAGAGTGCTC ATGAATGTTTCTGTTGTGAGCCTCGCATTTTTGTGCCGCTACAAAATTTTTTTAAGAAAA GGTCTATTTATTGTCT