Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0602600-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:30410105:30413160:1 gene:Os04g0602600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0602600-01)
Sequence	ATGTCCTCTCCTCGCTGCGCCGTCTCGCTCCCACCCACCGCCGCGGCGACCACCGCCACC AATGGCGGAGGCGGCGGGAGGAGGAACGCGCAGCCGGCAGCGGCGACGGCGGCGTCGCAG GTGAAGAAGCTGTGCAAGCAGGGGCGGCTGGACCACGCGCGGCGGCTGCTCCTCGAGGCG CTTCCCCGGCCGCCACCGACGCTGCTCTGCAACGCGCTCCTCATCGCCTACGCCGCCCGC GCGCTCCCGGAGGAGGCGCTCCGCCTCTACGCTCTCCTCAACCACGCCGCGCGCCCGCCG GTCCGCTCCGACCACTACACCTACTCCGCCGCGCTCACCGCCTGCGCACGCTCCCGCCGC CTCCGCCTCGGGAGGTCCGTCCACGCGCACATGCTCCGGCGCGCCCGCTCCCTCCCGGAC ACCGCCGTCCTCCGCAACTCCCTCCTCAACCTCTACGCCTCCAGCGTGCGGTACCGGGAG GCACGCGTCGACGTCGTCCGGAGGCTGTTCGACGCAATGCCTAAGAGGAACGTGGTTTCT TGGAACACTCTGTTCGGCTGGTACGTCAAGACCGGGCGTCCCCAGGAAGCCCTGGAGCTG TTTGTGCGCATGCTAGAAGATGGTTTCAGGCCCACGCCGGTCAGCTTCGTGAATATATTT CCGGCTGCTGTGGCTGACGATCCAAGCTGGCCATTCCAGCTCTACGGATTACTTGTGAAG TATGGGGTAGAGTATATCAACGATCTGTTTGTTGTGAGCTCAGCAATCGACATGTTCTCC GAATTTGGGGATGTGCAATCAGCTCGGAGGGTGTTTGATCGTGCTGCCAAGAAGAACACC GAGGTTTGGAACACCATGATCACTGGGTATGTACAGAATGGCCAGTTTTCTGAAGCCATT GATCTCTTCAGCAAAATCTTGGGATCCCGAGAGGTTCCATTGGATGTTGTGACCTTCTTA TCGGCCCTCACAGCTGCCTCACAGTCACAGGATGTTAGCTTGGGTCAGCAGCTGCATGGC TATTTGATTAAAGGAATGCATAGGACATTGCCTGTAATACTCGGTAATGCACTTGTTGTG ATGTACTCAAGATGTGGCAATGTCCAAACTGCCTTTGATCTCTTCGACCGGTTGCCAGAG AAGGACATTGTTACTTGGAATACCATGGTGACTGCTTTTATACAGAACGATTTTGACTTG GAAGGCTTGCTGCTCGTCTATGAGATGCAGAAATCAGGTTTTGCTGCTGATTCTGTGACA TTGACTGCAGTTCTGTCAGCATCATCAAATACTGGAGACCTTCAGATCGGTAAACAAGCA CATGGTTATCTTATCAGGCATGGTATCGAGGGTGAGGGCTTGGAGAGCTACCTAATAGAC ATGTATGCAAAATCTGGCCGTGTAGAAATGGCTCAGAGAGTGTTTGATAGCTTTAAAAAT GCCAAGAGGGATGAAGTCACTTGGAATGCCATGATAGCGGGATACACACAGAGTGGACAG CCTGAAAAGGCAATCTTAGTATTCCGGGCAATGCTTGAGGCAGGTCTTGAACCTACTTCG GTGACACTTGCTTCGGTGCTACCTGCATGTGATCCTGTTGGAGGGGGCGTTTATTCTGGG AAGCAAATCCACTGTTTTGCTGTGCGCCGTTGTTTGGATACCAATGTCTTCGTAGGTACA GCTCTTATTGACATGTACTCTAAGTGTGGTGAGATCACTACAGCAGAAAATGTCTTTGGT GGCATGACGGGGAAGAGCACTGTCACCTATACGACAATGATATCTGGTCTTGGTCAGCAT GGTTTCGGCAAAAAAGCGCTTGCTCTTTTCAACTCCATGCAAGAAAAGGGGTTGAAGCCT GATGCAGTGACCTTCTTGTCTGCGATTTCAGCATGTAATTACTCTGGACTCGTCGACGAA GGACTAGCTTTGTACAGGTCGATGGACTCATTTGGAATTTCGGCTACTCCTCAGCACCAC TGCTGTGTTGCAGACTTGTTAGCTAAAGCTGGAAGGGTGGAGGAAGCATACGAGTTTATA GAGGGGCTGGGGGAGGAGGGCAACTTTGTTGCCATCTGGGGATCGCTGCTTGCATCCTGC AAAGCTCAGGGCAAGCAAGAGTTGGCAAAGTTGGTGACCAAGAAGCTGCTTGACATCGAG AAGCAGTACGGTCATGCAGGCTACAGCGTTTTGTTGTCACAGGTCCTTGCTGCTGAAAGT AACTGGAATAGTGCTGATAGTCTAAGAAAGGAGATGAGGGCAAGGGGATTGAAGAAAGAA GCAGGTTCTAGTTGGATTAAAGTCCAGAACGCAGCATTGGAACACAAGTTTATCGAAAAA GACCAAAATTATGTCGAAAATGAGCACATGTTCTCGATTCTGGATGGTGATGCCGACAGT ACGGATAGACTTTAA

Peptide Sequence

PEP ID	Os04t0602600-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:30410105:30413160:1 gene:Os04g0602600 transcript:Os04t0602600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0602600-01)
Sequence	MSSPRCAVSLPPTAAATTATNGGGGGRRNAQPAAATAASQVKKLCKQGRLDHARRLLLEA LPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACARSRR LRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVS WNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVK YGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAI DLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVV MYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVT LTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKN AKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSG KQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQH GFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHH CCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIE KQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNAALEHKFIEK DQNYVENEHMFSILDGDADSTDRL

Transcript Sequence

Transcript ID	Os04t0602600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:30410105:30413160:1 gene:Os04g0602600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0602600-01)
Sequence	ATCGAATCGTCTGTGGCGCCCGCGAAGCAACGGAAGAGATGAGGAGATGACTCGGATGAG CGGAAGCTGCAGGGAGCGAGTCGTCGTCGTCGTCGTCACCGCGAGGCGCCGCGCCAACCT CTCATGTCCTCTCCTCGCTGCGCCGTCTCGCTCCCACCCACCGCCGCGGCGACCACCGCC ACCAATGGCGGAGGCGGCGGGAGGAGGAACGCGCAGCCGGCAGCGGCGACGGCGGCGTCG CAGGTGAAGAAGCTGTGCAAGCAGGGGCGGCTGGACCACGCGCGGCGGCTGCTCCTCGAG GCGCTTCCCCGGCCGCCACCGACGCTGCTCTGCAACGCGCTCCTCATCGCCTACGCCGCC CGCGCGCTCCCGGAGGAGGCGCTCCGCCTCTACGCTCTCCTCAACCACGCCGCGCGCCCG CCGGTCCGCTCCGACCACTACACCTACTCCGCCGCGCTCACCGCCTGCGCACGCTCCCGC CGCCTCCGCCTCGGGAGGTCCGTCCACGCGCACATGCTCCGGCGCGCCCGCTCCCTCCCG GACACCGCCGTCCTCCGCAACTCCCTCCTCAACCTCTACGCCTCCAGCGTGCGGTACCGG GAGGCACGCGTCGACGTCGTCCGGAGGCTGTTCGACGCAATGCCTAAGAGGAACGTGGTT TCTTGGAACACTCTGTTCGGCTGGTACGTCAAGACCGGGCGTCCCCAGGAAGCCCTGGAG CTGTTTGTGCGCATGCTAGAAGATGGTTTCAGGCCCACGCCGGTCAGCTTCGTGAATATA TTTCCGGCTGCTGTGGCTGACGATCCAAGCTGGCCATTCCAGCTCTACGGATTACTTGTG AAGTATGGGGTAGAGTATATCAACGATCTGTTTGTTGTGAGCTCAGCAATCGACATGTTC TCCGAATTTGGGGATGTGCAATCAGCTCGGAGGGTGTTTGATCGTGCTGCCAAGAAGAAC ACCGAGGTTTGGAACACCATGATCACTGGGTATGTACAGAATGGCCAGTTTTCTGAAGCC ATTGATCTCTTCAGCAAAATCTTGGGATCCCGAGAGGTTCCATTGGATGTTGTGACCTTC TTATCGGCCCTCACAGCTGCCTCACAGTCACAGGATGTTAGCTTGGGTCAGCAGCTGCAT GGCTATTTGATTAAAGGAATGCATAGGACATTGCCTGTAATACTCGGTAATGCACTTGTT GTGATGTACTCAAGATGTGGCAATGTCCAAACTGCCTTTGATCTCTTCGACCGGTTGCCA GAGAAGGACATTGTTACTTGGAATACCATGGTGACTGCTTTTATACAGAACGATTTTGAC TTGGAAGGCTTGCTGCTCGTCTATGAGATGCAGAAATCAGGTTTTGCTGCTGATTCTGTG ACATTGACTGCAGTTCTGTCAGCATCATCAAATACTGGAGACCTTCAGATCGGTAAACAA GCACATGGTTATCTTATCAGGCATGGTATCGAGGGTGAGGGCTTGGAGAGCTACCTAATA GACATGTATGCAAAATCTGGCCGTGTAGAAATGGCTCAGAGAGTGTTTGATAGCTTTAAA AATGCCAAGAGGGATGAAGTCACTTGGAATGCCATGATAGCGGGATACACACAGAGTGGA CAGCCTGAAAAGGCAATCTTAGTATTCCGGGCAATGCTTGAGGCAGGTCTTGAACCTACT TCGGTGACACTTGCTTCGGTGCTACCTGCATGTGATCCTGTTGGAGGGGGCGTTTATTCT GGGAAGCAAATCCACTGTTTTGCTGTGCGCCGTTGTTTGGATACCAATGTCTTCGTAGGT ACAGCTCTTATTGACATGTACTCTAAGTGTGGTGAGATCACTACAGCAGAAAATGTCTTT GGTGGCATGACGGGGAAGAGCACTGTCACCTATACGACAATGATATCTGGTCTTGGTCAG CATGGTTTCGGCAAAAAAGCGCTTGCTCTTTTCAACTCCATGCAAGAAAAGGGGTTGAAG CCTGATGCAGTGACCTTCTTGTCTGCGATTTCAGCATGTAATTACTCTGGACTCGTCGAC GAAGGACTAGCTTTGTACAGGTCGATGGACTCATTTGGAATTTCGGCTACTCCTCAGCAC CACTGCTGTGTTGCAGACTTGTTAGCTAAAGCTGGAAGGGTGGAGGAAGCATACGAGTTT ATAGAGGGGCTGGGGGAGGAGGGCAACTTTGTTGCCATCTGGGGATCGCTGCTTGCATCC TGCAAAGCTCAGGGCAAGCAAGAGTTGGCAAAGTTGGTGACCAAGAAGCTGCTTGACATC GAGAAGCAGTACGGTCATGCAGGCTACAGCGTTTTGTTGTCACAGGTCCTTGCTGCTGAA AGTAACTGGAATAGTGCTGATAGTCTAAGAAAGGAGATGAGGGCAAGGGGATTGAAGAAA GAAGCAGGTTCTAGTTGGATTAAAGTCCAGAACGCAGCATTGGAACACAAGTTTATCGAA AAAGACCAAAATTATGTCGAAAATGAGCACATGTTCTCGATTCTGGATGGTGATGCCGAC AGTACGGATAGACTTTAACATGTTTCAATACCTTTTGGCACGCAAGATTGCAGATATGAG ATTCCTAATCCTATTGTGGTGATTACCTCACGCTGACAGACTAGGCTCCTGTTTTACCTG CAGTTTAACATGATTTATCTTCATTCAGAAATCAGAATTGATGCTCCTCATAGTAATACT TGACTGGATGGAAACTTGGAAAGACACCTAGCCCACAAACCTCATGCGGCGGCCACACGG TGAACTTGTGCTGCGAGACATCAATCTATGGATGAGGTTGATACCAATGATGTGCCAGAT GAAGAGCAAGCTGCAATCTTGCAGGTGGCCAGGTTGTAACTTGTATTCAGTAGTACGCAT ATCTTGACAAGCACAGCGCCCTCCTTAGGGATTCTGGGTGAATTGTACAGCTACATTTGC TTATAATCGTCTAGAAATAGGTGAGTACTGTCATAGAACGAGCAACGTGATTAGGCAACG GGATTTTTTTTGGTTGTGAACGTACATACAATATCTTAAATGAAGATTATTCTCAC