Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0602500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:30405474:30409231:1 gene:Os04g0602500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin acetylesterase. (Os04t0602500-01);Similar to B0403H10-OSIGBa0105A11.19 protein. (Os04t0602500-02)
Sequence

ATGCCCCGTTACTGTCGGCACCCTGCTCTCTCCTCCCTCCCCTTTATTGCTTCCTCCCTC
CCTCCCTCCCTCTTCACAGCACAACACGCTGCCACCATTTATGCCACTCCCTCCCTCCCA
GCTGTGGTGACAGGACGAGCGTCTCATTCTCAACCTGAGGCTCACCTTCTCTCAGTCATA
TTCTCCGTCTTCTTCTCCAGTACGCTCGCAATGGCTGCTTCGTCCGGCGAATGGCTGAGC
CGGGCAGCTATGGTGTTGGTGCTAGGTCTCGTGGTGGCGTCGTCAGCTAAGGCGGGCGAT
GTGGACATGGTGTTCCTGAAGAGTGCAGTGAGCACGGGAGCAGTTTGCCTGGATGGGAGC
CCACCGGTTTACCACTTCTCTCCTGGTTCTGGCTCTGGTGCCAACAACTGGCTGGTTCAT
ATGGAGGGAGGAGGTTGGTGCAGGAATGCCCAAGAGTGTTCTGTCAGGCAGGGTAACTTC
AGGGGCTCTTCCAAATTTATGAGGCCACTATCGTTTTCAGGGATAATAGGTGGCAACCAG
AGAAACAATCCTGATTTCTATAACTGGAACAGGATAAAGGTCAGATATTGTGATGGCTCA
TCATTTACTGGCGACGTTGAAACAGTAGAAACTTCGACGAACCTCCATTTCAGAGGGGCC
AGAGTTTGGAATGCCATCATTGAAGATCTACTAGCAAAGGGGATGAGCAAAGCACAAAAT
GCTCTTCTTTCTGGTTGTTCGGCTGGAGGTCTGGCTGCCATACTGCACTGTGACCAATTC
CGAGATCTGCTTCCAGCAACTGCAAATGTGAAGTGCTTTTCTGATGCTGGTTTTTTTGTT
GATGGAAAGGATATCACCGGGAATGATTTTGTCAGAACATTCTACAAGGATGTCGTAAAT
CTACATGGATCGGCTAAAAATTTACCATCTTCATGTACGTCAAAGATGTCCCCTGATCTG
TGTTTCTTCCCGCAGAATGTAGTGCCAACATTGCGCACACCGTTGTTCATACTTAATGCA
GCATATGATGCATGGCAGATCAAGAACGTCCTAGCACCTAGTGCCGCTGACAAAAAGAAG
ACTTGGGCCAAATGCAAGCTTGATATAACAGCTTGCTCCTCAAGCCAGCTCACAACCTTG
CAAAATTTCAGGACAGATTTTCTGGCAGCTCTTCCTAAACCAGAGCAGTCCCCAGCCAAT
TTGAGCATATTCATAGACTCATGCTATGCCCACTGCCAATCTGGGTCCCAGGATACATGG
CTCGCTCAAGGTTCTCCTGTAGTTGAGAAGACGCAAATTGGTAAAGCAGTAGGAGACTGG
TTCCACGATCGGGAAGTATCCCGGAGGATTGATTGCCCTTATCCCTGCAACCCAACCTGC
AAGAACCGTGATGATGATTAA

Peptide Sequence

PEP ID

Os04t0602500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:30405474:30409231:1 gene:Os04g0602500 transcript:Os04t0602500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin acetylesterase. (Os04t0602500-01);Similar to B0403H10-OSIGBa0105A11.19 protein. (Os04t0602500-02)
Sequence

MPRYCRHPALSSLPFIASSLPPSLFTAQHAATIYATPSLPAVVTGRASHSQPEAHLLSVI
FSVFFSSTLAMAASSGEWLSRAAMVLVLGLVVASSAKAGDVDMVFLKSAVSTGAVCLDGS
PPVYHFSPGSGSGANNWLVHMEGGGWCRNAQECSVRQGNFRGSSKFMRPLSFSGIIGGNQ
RNNPDFYNWNRIKVRYCDGSSFTGDVETVETSTNLHFRGARVWNAIIEDLLAKGMSKAQN
ALLSGCSAGGLAAILHCDQFRDLLPATANVKCFSDAGFFVDGKDITGNDFVRTFYKDVVN
LHGSAKNLPSSCTSKMSPDLCFFPQNVVPTLRTPLFILNAAYDAWQIKNVLAPSAADKKK
TWAKCKLDITACSSSQLTTLQNFRTDFLAALPKPEQSPANLSIFIDSCYAHCQSGSQDTW
LAQGSPVVEKTQIGKAVGDWFHDREVSRRIDCPYPCNPTCKNRDDD

Transcript Sequence

Transcript ID

Os04t0602500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:30405474:30409231:1 gene:Os04g0602500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin acetylesterase. (Os04t0602500-01);Similar to B0403H10-OSIGBa0105A11.19 protein. (Os04t0602500-02)
Sequence

AGGGTGCTAAGGGAGTTGCTTTGAGAGCCATCCATATATACTTTGCTTGATGCCCCGTTA
CTGTCGGCACCCTGCTCTCTCCTCCCTCCCCTTTATTGCTTCCTCCCTCCCTCCCTCCCT
CTTCACAGCACAACACGCTGCCACCATTTATGCCACTCCCTCCCTCCCAGCTGTGGTGAC
AGGACGAGCGTCTCATTCTCAACCTGAGGCTCACCTTCTCTCAGTCATATTCTCCGTCTT
CTTCTCCAGTACGCTCGCAATGGCTGCTTCGTCCGGCGAATGGCTGAGCCGGGCAGCTAT
GGTGTTGGTGCTAGGTCTCGTGGTGGCGTCGTCAGCTAAGGCGGGCGATGTGGACATGGT
GTTCCTGAAGAGTGCAGTGAGCACGGGAGCAGTTTGCCTGGATGGGAGCCCACCGGTTTA
CCACTTCTCTCCTGGTTCTGGCTCTGGTGCCAACAACTGGCTGGTTCATATGGAGGGAGG
AGGTTGGTGCAGGAATGCCCAAGAGTGTTCTGTCAGGCAGGGTAACTTCAGGGGCTCTTC
CAAATTTATGAGGCCACTATCGTTTTCAGGGATAATAGGTGGCAACCAGAGAAACAATCC
TGATTTCTATAACTGGAACAGGATAAAGGTCAGATATTGTGATGGCTCATCATTTACTGG
CGACGTTGAAACAGTAGAAACTTCGACGAACCTCCATTTCAGAGGGGCCAGAGTTTGGAA
TGCCATCATTGAAGATCTACTAGCAAAGGGGATGAGCAAAGCACAAAATGCTCTTCTTTC
TGGTTGTTCGGCTGGAGGTCTGGCTGCCATACTGCACTGTGACCAATTCCGAGATCTGCT
TCCAGCAACTGCAAATGTGAAGTGCTTTTCTGATGCTGGTTTTTTTGTTGATGGAAAGGA
TATCACCGGGAATGATTTTGTCAGAACATTCTACAAGGATGTCGTAAATCTACATGGATC
GGCTAAAAATTTACCATCTTCATGTACGTCAAAGATGTCCCCTGATCTGTGTTTCTTCCC
GCAGAATGTAGTGCCAACATTGCGCACACCGTTGTTCATACTTAATGCAGCATATGATGC
ATGGCAGATCAAGAACGTCCTAGCACCTAGTGCCGCTGACAAAAAGAAGACTTGGGCCAA
ATGCAAGCTTGATATAACAGCTTGCTCCTCAAGCCAGCTCACAACCTTGCAAAATTTCAG
GACAGATTTTCTGGCAGCTCTTCCTAAACCAGAGCAGTCCCCAGCCAATTTGAGCATATT
CATAGACTCATGCTATGCCCACTGCCAATCTGGGTCCCAGGATACATGGCTCGCTCAAGG
TTCTCCTGTAGTTGAGAAGACGCAAATTGGTAAAGCAGTAGGAGACTGGTTCCACGATCG
GGAAGTATCCCGGAGGATTGATTGCCCTTATCCCTGCAACCCAACCTGCAAGAACCGTGA
TGATGATTAAGCAATTCGACCTGAAAACTTCTGTTAAATTCTAGTACTGTGTTGTTAAAT
ATCAAGTGAAGCAATAAGGGATTAGTCTATAGATAGAGCCATAGAGAGGTGTTACTGTTA
CCCACGATTTCTTCAATTCTTCTCCATTCTGTTTCTATGCCTTTGTCGACGATGAATCAT
GAACATATAGTTCAGT