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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0600900-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:30317749:30321610:-1 gene:Os04g0600900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GROWTH-REGULATING FACTOR 3 description:Similar to B0403H10-OSIGBa0105A11.9 protein. (Os04t0600900-01);Transcriptional activator/repressor, Reguration of KNOX gene, Oskn2 (Regulator of meristem function) (Os04t0600900-02)
Sequence

ATGGCGATGCCCTTTGCCTCCCTGTCGCCGGCAGCCGACCACCGGCCCTCCTTCATCTTC
CCCTTCTGCCGCTCCTCCCCTCTCTCCGCGGTCGGGGAGGAGGCGCAGCAGCACATGATG
GGCGCGAGGTGGGCGGCGGCGGTGGCCAGGCCGCCGCCCTTCACGGCGGCGCAGTACGAG
GAGCTGGAGCAGCAGGCGCTCATATACAAGTACCTCGTCGCCGGCGTGCCCGTCCCGGCG
GATCTCCTCCTCCCCATCCGCCGTGGCCTCGACTCACTCGCCTCGCGCTTCTACCACCAC
CCTGTCCTTGGATACGGTTCCTACTTCGGCAAGAAGCTGGACCCGGAGCCCGGACGGTGC
CGGCGTACGGACGGCAAGAAGTGGCGGTGCTCCAAGGAGGCCGCGCCGGACTCCAAGTAC
TGTGAGCGACACATGCACCGCGGCCGCAACCGTTCAAGAAAGCCTGTGGAAGCGCAGCTC
GTCGCCCCCCACTCGCAGCCCCCCGCCACGGCGCCGGCCGCCGCCGTCACCTCCACCGCC
TTCCAGAACCACTCGCTGTACCCGGCGATTGCTAATGGCGGCGGCGCCAACGGAGGCGGT
GGTGGTGGTGGCGGTGGCGGCAGCGCGCCTGGCTCGTTCGCCTTGGGGTCTAATACTCAG
CTGCACATGGACAATGCTGCGTCTTACTCGACTGTTGCTGCTGGTGCCGGAAACAAAGAT
TTCAGGTATTCTGCTTATGGAGTGAGACCATTGGCAGATGAGCACAGCCCACTCATCACT
GGAGCTATGGATACCTCTATTGACAATTCGTGGTGCTTGCTGCCTTCTCAGACCTCCACA
TTTTCAGTTTCGAGCTACCCTATGCTTGGAAATCTGAGTGAGCTGGACCAGAACACCATC
TGCTCGCTGCCGAAGGTGGAGAGGGAGCCATTGTCATTCTTCGGGAGCGACTATGTGACC
GTCGACTCCGGGAAGCAGGAGAACCAGACGCTGCGCCCCTTTTTCGACGAGTGGCCAAAG
GCAAGGGACTCCTGGCCTGATCTAGCTGATGACAACAGCCTTGCCACCTTCTCTGCCACT
CAGCTCTCGATCTCCATTCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCA
CACAACGATGAGTGA

Peptide Sequence

PEP ID

Os04t0600900-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:30317749:30321610:-1 gene:Os04g0600900 transcript:Os04t0600900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GROWTH-REGULATING FACTOR 3 description:Similar to B0403H10-OSIGBa0105A11.9 protein. (Os04t0600900-01);Transcriptional activator/repressor, Reguration of KNOX gene, Oskn2 (Regulator of meristem function) (Os04t0600900-02)
Sequence

MAMPFASLSPAADHRPSFIFPFCRSSPLSAVGEEAQQHMMGARWAAAVARPPPFTAAQYE
ELEQQALIYKYLVAGVPVPADLLLPIRRGLDSLASRFYHHPVLGYGSYFGKKLDPEPGRC
RRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEAQLVAPHSQPPATAPAAAVTSTA
FQNHSLYPAIANGGGANGGGGGGGGGGSAPGSFALGSNTQLHMDNAASYSTVAAGAGNKD
FRYSAYGVRPLADEHSPLITGAMDTSIDNSWCLLPSQTSTFSVSSYPMLGNLSELDQNTI
CSLPKVEREPLSFFGSDYVTVDSGKQENQTLRPFFDEWPKARDSWPDLADDNSLATFSAT
QLSISIPMATSDFSTTSSRSHNDE

Transcript Sequence

Transcript ID

Os04t0600900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:30317749:30321610:-1 gene:Os04g0600900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GROWTH-REGULATING FACTOR 3 description:Similar to B0403H10-OSIGBa0105A11.9 protein. (Os04t0600900-01);Transcriptional activator/repressor, Reguration of KNOX gene, Oskn2 (Regulator of meristem function) (Os04t0600900-02)
Sequence

GAGAGTGTGTGTGTGTGTGAGGGAGAGAGAGATAGCGGCAGCATATATGGCGATGCCCTT
TGCCTCCCTGTCGCCGGCAGCCGACCACCGGCCCTCCTTCATCTTCCCCTTCTGCCGCTC
CTCCCCTCTCTCCGCGGTCGGGGAGGAGGCGCAGCAGCACATGATGGGCGCGAGGTGGGC
GGCGGCGGTGGCCAGGCCGCCGCCCTTCACGGCGGCGCAGTACGAGGAGCTGGAGCAGCA
GGCGCTCATATACAAGTACCTCGTCGCCGGCGTGCCCGTCCCGGCGGATCTCCTCCTCCC
CATCCGCCGTGGCCTCGACTCACTCGCCTCGCGCTTCTACCACCACCCTGTCCTTGGATA
CGGTTCCTACTTCGGCAAGAAGCTGGACCCGGAGCCCGGACGGTGCCGGCGTACGGACGG
CAAGAAGTGGCGGTGCTCCAAGGAGGCCGCGCCGGACTCCAAGTACTGTGAGCGACACAT
GCACCGCGGCCGCAACCGTTCAAGAAAGCCTGTGGAAGCGCAGCTCGTCGCCCCCCACTC
GCAGCCCCCCGCCACGGCGCCGGCCGCCGCCGTCACCTCCACCGCCTTCCAGAACCACTC
GCTGTACCCGGCGATTGCTAATGGCGGCGGCGCCAACGGAGGCGGTGGTGGTGGTGGCGG
TGGCGGCAGCGCGCCTGGCTCGTTCGCCTTGGGGTCTAATACTCAGCTGCACATGGACAA
TGCTGCGTCTTACTCGACTGTTGCTGCTGGTGCCGGAAACAAAGATTTCAGGTATTCTGC
TTATGGAGTGAGACCATTGGCAGATGAGCACAGCCCACTCATCACTGGAGCTATGGATAC
CTCTATTGACAATTCGTGGTGCTTGCTGCCTTCTCAGACCTCCACATTTTCAGTTTCGAG
CTACCCTATGCTTGGAAATCTGAGTGAGCTGGACCAGAACACCATCTGCTCGCTGCCGAA
GGTGGAGAGGGAGCCATTGTCATTCTTCGGGAGCGACTATGTGACCGTCGACTCCGGGAA
GCAGGAGAACCAGACGCTGCGCCCCTTTTTCGACGAGTGGCCAAAGGCAAGGGACTCCTG
GCCTGATCTAGCTGATGACAACAGCCTTGCCACCTTCTCTGCCACTCAGCTCTCGATCTC
CATTCCAATGGCAACCTCTGACTTCTCGACCACCAGCTCACGATCACACAACGATGAGTG
AATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGTTTGCTGAATTGTACG
GAGTCCTGGACTGCGCCTAGTTTTCCCAAAGCAAGAACAATACCGCATTAATATGTTTAT
GTAATTTTCGAGCAATGCTCTTCTATGTTTTTGTTATGTTTTATCCTATTGGGGAATTGT
ATGAAGTCCAAGTCGATCAGAATCCCCTGTACTTGATGTCGAAACCTCATTTTGAGTATC
AAATCAA