Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0600300-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:30291463:30293040:-1 gene:Os04g0600300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALTERNATIVE OXIDASE 1B description:Homodimeric diiron-carboxylate protein, Cyanide-resistant respiration in mitochondria, Reactive oxygen species (ROS) scavenging (Os04t0600300-01)
Sequence

ATGAGCTCCCGAATGGCCGGAGCGACGCTGCTGCGCCACCTGGGCCCCCGCCTGTTCGCC
GCCGAGCCTGTGTACTCCGGGCTCGCCGCGAGCGCCAGGGGCGTCATGCCCGCCGCCGCG
AGGATTTTCCCCGCGCGGATGGCCAGCACCAGCAGCGCCGGCGCGGACGTCAAAGAAGGC
GCAGCCGAGAAGCTGCCGGAGCCGGCGGCAACGGCGGCGGCGGCGGCGACCGACCCGCAG
AACAAGAAGGCCGTCGTGAGCTACTGGGGCATCCAGCCGCCGAAGCTCGTGAAGGAGGAC
GGCACGGAATGGAAGTGGCTCAGTTTTAGGCCATGGGACACGTACACGTCGGACACGTCG
ATCGACGTGACGAAGCACCACGAGCCGAAGGGCCTCCCGGACAAGCTGGCGTACTGGACG
GTGAGGTCGCTGGCGGTGCCCAGGGACCTCTTCTTCCAGCGGCGGCACGCGAGCCACGCG
CTGCTGCTGGAGACGGTGGCCGGGGTGCCCGGGATGGTGGGCGGCATGCTGCTCCACCTG
CGCTCCCTCCGCCGCTTCGAGCAGAGCGGCGGCTGGATCCGCGCGCTGCTGGAGGAGGCC
GAGAACGAGCGGATGCACCTGATGACCTTCCTGGAGGTGATGCAGCCACGGTGGTGGGAG
CGCGCCCTCGTGCTCGCCGCGCAGGGCGTCTTCTTCAACGCCTACTTCGTCGGCTACCTC
GTCTCCCCCAAGTTCGCGCACCGCTTCGTCGGCTACCTCGAGGAGGAGGCCGTGAGCTCG
TACACCGAGTACCTCAAGGACCTCGAGGCCGGCAAGATCGAGAACACGCCGGCGCCGGCC
ATCGCCATCGACTACTGGCGCCTCCCCGCCGACGCCACGCTCAAGGACGTCGTCACCGTC
ATCCGCGCCGACGAGGCGCACCACCGCGACCTCAACCATTTCGCATCGGACATCCAGCAA
CAGGGGATGAAGCTGAAGGATACGCCTGCGCCTATCGGGTATCACTGA

Peptide Sequence

PEP ID

Os04t0600300-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:30291463:30293040:-1 gene:Os04g0600300 transcript:Os04t0600300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALTERNATIVE OXIDASE 1B description:Homodimeric diiron-carboxylate protein, Cyanide-resistant respiration in mitochondria, Reactive oxygen species (ROS) scavenging (Os04t0600300-01)
Sequence

MSSRMAGATLLRHLGPRLFAAEPVYSGLAASARGVMPAAARIFPARMASTSSAGADVKEG
AAEKLPEPAATAAAAATDPQNKKAVVSYWGIQPPKLVKEDGTEWKWLSFRPWDTYTSDTS
IDVTKHHEPKGLPDKLAYWTVRSLAVPRDLFFQRRHASHALLLETVAGVPGMVGGMLLHL
RSLRRFEQSGGWIRALLEEAENERMHLMTFLEVMQPRWWERALVLAAQGVFFNAYFVGYL
VSPKFAHRFVGYLEEEAVSSYTEYLKDLEAGKIENTPAPAIAIDYWRLPADATLKDVVTV
IRADEAHHRDLNHFASDIQQQGMKLKDTPAPIGYH

Transcript Sequence

Transcript ID

Os04t0600300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:30291463:30293040:-1 gene:Os04g0600300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALTERNATIVE OXIDASE 1B description:Homodimeric diiron-carboxylate protein, Cyanide-resistant respiration in mitochondria, Reactive oxygen species (ROS) scavenging (Os04t0600300-01)
Sequence

CACACCACCTATCACAGCAACACAAGCCAACCACAAAGAATTCTCATTTCCGGTAACTTT
TCTCAAGCCTTTTTGGCGCTCTGAGAATCATCACACGGAAGTCAAGCCTTTGTTGTTGTC
GTGATTAGTTTAGTTTAGTCACCGAGATGAGCTCCCGAATGGCCGGAGCGACGCTGCTGC
GCCACCTGGGCCCCCGCCTGTTCGCCGCCGAGCCTGTGTACTCCGGGCTCGCCGCGAGCG
CCAGGGGCGTCATGCCCGCCGCCGCGAGGATTTTCCCCGCGCGGATGGCCAGCACCAGCA
GCGCCGGCGCGGACGTCAAAGAAGGCGCAGCCGAGAAGCTGCCGGAGCCGGCGGCAACGG
CGGCGGCGGCGGCGACCGACCCGCAGAACAAGAAGGCCGTCGTGAGCTACTGGGGCATCC
AGCCGCCGAAGCTCGTGAAGGAGGACGGCACGGAATGGAAGTGGCTCAGTTTTAGGCCAT
GGGACACGTACACGTCGGACACGTCGATCGACGTGACGAAGCACCACGAGCCGAAGGGCC
TCCCGGACAAGCTGGCGTACTGGACGGTGAGGTCGCTGGCGGTGCCCAGGGACCTCTTCT
TCCAGCGGCGGCACGCGAGCCACGCGCTGCTGCTGGAGACGGTGGCCGGGGTGCCCGGGA
TGGTGGGCGGCATGCTGCTCCACCTGCGCTCCCTCCGCCGCTTCGAGCAGAGCGGCGGCT
GGATCCGCGCGCTGCTGGAGGAGGCCGAGAACGAGCGGATGCACCTGATGACCTTCCTGG
AGGTGATGCAGCCACGGTGGTGGGAGCGCGCCCTCGTGCTCGCCGCGCAGGGCGTCTTCT
TCAACGCCTACTTCGTCGGCTACCTCGTCTCCCCCAAGTTCGCGCACCGCTTCGTCGGCT
ACCTCGAGGAGGAGGCCGTGAGCTCGTACACCGAGTACCTCAAGGACCTCGAGGCCGGCA
AGATCGAGAACACGCCGGCGCCGGCCATCGCCATCGACTACTGGCGCCTCCCCGCCGACG
CCACGCTCAAGGACGTCGTCACCGTCATCCGCGCCGACGAGGCGCACCACCGCGACCTCA
ACCATTTCGCATCGGACATCCAGCAACAGGGGATGAAGCTGAAGGATACGCCTGCGCCTA
TCGGGTATCACTGATCATCATTCATCAACGGGCGATGCCTGCTCAGTTCATCACCATCAC
TGCTACTACATGCGTATTTTACATCCTATTTGGGATAAACTTTGTTCTGTGTATATATGT
AAATAAGCTATTGTCACTCCGTTTTATGCCTGTACCTATATGCATGCTGAGATTATGCAA
ATTGTGAATAACAATATAGTAAGATTTTTTTTGGAGTAG