Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0598200-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:30180330:30181981:1 gene:Os04g0598200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L12. (Os04t0598200-00)
Sequence

ATGCCGCCGAAGCTCGACCCGACGCAGGTGGTGGATGTGTTCGTCCGCGTGACCGGAGGC
GAGGTGGGCGCGGCGTCGTCCCTTGCCCCCAAGATCGGCCCTCTCGGTCTCTCCCCCAAG
AAGATCGGTGAGGACATCGCCAAGGAGACGGCCAAGGACTGGAAGGGCCTCCGCGTCACC
GTCAAGCTCACCGTCCAGAACCGTCAGGCGAAGGTGTCCGTCGTCCCCTCCGCCGCGGCG
CTCGTCATCAAGGCCCTCAAGGAGCCCGAGCGGGACAGGAAGAAGGTCAAGAACATCAAG
CACAGTGGTAACATCAGCCTCGACGACGTCATCGAGATCGCCAGGATCATGAGGAACAGG
TCCATGGCCAAGGAGATGGCCGGGACCGTCAAGGAGATCCTTGGGACCTGCGTCAGCGTT
GGGTGCACCGTCGACGGCAAGGACCCCAAGGATCTGCAGCAGGAGATCTCCGATGGCGAG
GTCGAGATCCCTTCGGCTTAA

Peptide Sequence

PEP ID

Os04t0598200-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:30180330:30181981:1 gene:Os04g0598200 transcript:Os04t0598200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L12. (Os04t0598200-00)
Sequence

MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR
SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEIPSA

Transcript Sequence

Transcript ID

Os04t0598200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:30180330:30181981:1 gene:Os04g0598200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L12. (Os04t0598200-00)
Sequence

CTGCGCCTCCACTCCCACCCGTAGCGCCTCCCCGCGAACCCACTCCCAGCCGCCGCCGCC
GCCACCTGCAACCGAGGGCTCGCCATGCCGCCGAAGCTCGACCCGACGCAGGTGGTGGAT
GTGTTCGTCCGCGTGACCGGAGGCGAGGTGGGCGCGGCGTCGTCCCTTGCCCCCAAGATC
GGCCCTCTCGGTCTCTCCCCCAAGAAGATCGGTGAGGACATCGCCAAGGAGACGGCCAAG
GACTGGAAGGGCCTCCGCGTCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCGAAGGTG
TCCGTCGTCCCCTCCGCCGCGGCGCTCGTCATCAAGGCCCTCAAGGAGCCCGAGCGGGAC
AGGAAGAAGGTCAAGAACATCAAGCACAGTGGTAACATCAGCCTCGACGACGTCATCGAG
ATCGCCAGGATCATGAGGAACAGGTCCATGGCCAAGGAGATGGCCGGGACCGTCAAGGAG
ATCCTTGGGACCTGCGTCAGCGTTGGGTGCACCGTCGACGGCAAGGACCCCAAGGATCTG
CAGCAGGAGATCTCCGATGGCGAGGTCGAGATCCCTTCGGCTTAAAAGGCTTGATATTTG
AGGACATTACCATCTCGTGCTACTGAAGTGATCATTTGTTCCAAAATGCTGCTTATGTAC
CTTACGAGACGATGTGATTCGACCTATTTTTGTCATGCTTTAGTAGTGATCTTGTTGAGA
CCTCAATGTTACTATTGCAACTTGGTACCATTTGGTCCTCTGGAATGGAGTTTCAAGTAC
TTGCATAATTTAATCTATAGTCCTGTCTGATG