Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0597800-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:30161452:30165436:1 gene:Os04g0597800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PROTEIN TRANSPORTER 6 description:TGF-beta receptor, type I/II extracellular region family protein. (Os04t0597800-01)
Sequence

ATGGACGCCGGCGAAATCATCGTGGCCCAGCCATCGCCGCGGCTGTATAAGAGTTTGACT
TTCCGGAGGATCGCGACGAAGGAAAGGACCATTCCCCAGGATGAAGAGATGAAGATTCGC
AGCCCGAGGTTCCAGGACGAAAGCCTCACTGCGCCATTTATACTAGACAAGAAAGCGAGG
AGCAAAGCGCCAACAGTGGTCCTAGGATTCGAGTGCTTGGAGAGCACAGCATTTAACGGC
ATTGCCACGAACCTGGTGGTGTACCTGGAGACTCTCCTGCACGGCAGCAATCTCGCGAGC
GCGTCCAATGTCACGACGTGGTTCGGGACGAGCTACCTCACCCCGGTGTTCGGCGCCATC
ATCGCCGACACGTTCTGGGGCAACTACAACACCATCCTCGTCTCCCTCGTCTTCTATCTC
CTTGGTATGATGCTGGTCACCTTCTCGGCGTTCCTGCCGACCACCGCGCTGTGCACCGTG
GTGGGCTCGTCGTGCCAGCAGCCACTTCTTGGCGCGCAGACCATCGCCTTCCTCGGGCTC
TACCTCGTGGCGTTCGGAAGCGGCGGTGTGCGCGCGGCGCTGCTGCCGTTCGGCGCGGAC
CAGTTCGACGATGACAACACGGCCGACCGCGAGCGCAAGATGTCCTTCTTCAGCTGGTTC
TACATCTGCGTCGACTTCGGGATGATCGTGTCGGGCCTTTTCATCGTGTGGATCCAGCAG
AACGTTAGCTGGGGACTTGGCTTCGGCATCGCCACGGCCTGCATCGCGCTCGCCTTCGGC
GGCTTCGTGCTCGCCACGCCCATGTACAAGCGCCGCATGCCCACAGGCACGCCGATCAAG
AGCCTCGCGCAGGTCGTGGTTGCCGCGTGCCGGAAGGCAAGACTCCGTGTCCCCGCGGAC
ACTACTCTTCTCTACGAAGTCCATGACAAGATCAACCAGTCGAAGATAGCGCACACCGAC
CAGTTCGGCTTTCTTGACAAGGCCGCGGTGGTCATGGAGTCCGACTTGGAAGAGGAATCG
AACGACGTCGCGGCGGATGCCTCGTGGAGGATCTGCACGGTGACGCAGGTCGAGGAGCTC
AAGATCCTGCTGCGGCTATTGCCGATATGGGCGACGAGTATCGTGCTTTCGGCGGCGTAC
GCGCAGCTGAACACGACGTTCGTGCAGCAGGGCGCCGCGATGAACATGCGGATCATGTCG
TTCACCATCCCGCCCGCGTCGATGGTGTCCTTCGAGGTGCTCTGCGTCCTGGCATGGGTT
CTCATGTACAGCTCCGTGATCGTGCCCATGCTCAACAGCTTATCCCTGGCCAACGGCGAG
CCGTCGCAGCTGCAGCGGATGGGCGCGGGGCGGCTGCTCATGGCGTTCGCGATGGCCGTC
GCGGCGCTGGTGGAGATGATGCGGCTGGACGCGGCGGGGCGCGGCGAGTCCCTGAGCATC
GCGTGGCAGATGCCGCAGTACTTCGCGCTGGCCGGCGCGGAGGTGTTCTGCTACATCGCG
CAGCTGGAGTTCTTCTACAGCGAGGCGCCGGAGTCCATGAAGAGCATGTGCACGTCCCTG
GCGCTGCTCACCGTGGCGCTGGGAAGCTACATGAGCTCATTCATCTACGCCGTCGTGAAC
GCGTTCACCGCCGTGGACGGGCGGCCCGGGTGGATATCGGACAACCTCAACGAAGGACAC
ATGGACTACTTCTTCTGGGTCATGGCGGCGCTGTGCACGCTCAACTTCGTCGTGTACAGC
GCGTTCGCCCGGACCTACAGGGTGAAGCTGGTCGTGTCGTGA

Peptide Sequence

PEP ID

Os04t0597800-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:30161452:30165436:1 gene:Os04g0597800 transcript:Os04t0597800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PROTEIN TRANSPORTER 6 description:TGF-beta receptor, type I/II extracellular region family protein. (Os04t0597800-01)
Sequence

MDAGEIIVAQPSPRLYKSLTFRRIATKERTIPQDEEMKIRSPRFQDESLTAPFILDKKAR
SKAPTVVLGFECLESTAFNGIATNLVVYLETLLHGSNLASASNVTTWFGTSYLTPVFGAI
IADTFWGNYNTILVSLVFYLLGMMLVTFSAFLPTTALCTVVGSSCQQPLLGAQTIAFLGL
YLVAFGSGGVRAALLPFGADQFDDDNTADRERKMSFFSWFYICVDFGMIVSGLFIVWIQQ
NVSWGLGFGIATACIALAFGGFVLATPMYKRRMPTGTPIKSLAQVVVAACRKARLRVPAD
TTLLYEVHDKINQSKIAHTDQFGFLDKAAVVMESDLEEESNDVAADASWRICTVTQVEEL
KILLRLLPIWATSIVLSAAYAQLNTTFVQQGAAMNMRIMSFTIPPASMVSFEVLCVLAWV
LMYSSVIVPMLNSLSLANGEPSQLQRMGAGRLLMAFAMAVAALVEMMRLDAAGRGESLSI
AWQMPQYFALAGAEVFCYIAQLEFFYSEAPESMKSMCTSLALLTVALGSYMSSFIYAVVN
AFTAVDGRPGWISDNLNEGHMDYFFWVMAALCTLNFVVYSAFARTYRVKLVVS

Transcript Sequence

Transcript ID

Os04t0597800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:30161452:30165436:1 gene:Os04g0597800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PROTEIN TRANSPORTER 6 description:TGF-beta receptor, type I/II extracellular region family protein. (Os04t0597800-01)
Sequence

GGGGTTGGTGAGTTGGTCTGTTGGTGGCCGGGGCGCGGGCGCGCTTACCTGTTCTCCCTC
GCGTGGAGCTCTTTGACTACGCCCGCCAGCTGCGCGTGTGTATAACCTTGCTTGCTTGCC
TCTCACAGCCGAAGTCGCAGGCGCAGTCAGGAGCTATCGGGAAAACGGGATTTCCCCCAG
CTTTCCAAGGTTCGCGGGTCAATCTCGCAGTGATACTCCGGCGGCGGCAATGGACGCCGG
CGAAATCATCGTGGCCCAGCCATCGCCGCGGCTGTATAAGAGTTTGACTTTCCGGAGGAT
CGCGACGAAGGAAAGGACCATTCCCCAGGATGAAGAGATGAAGATTCGCAGCCCGAGGTT
CCAGGACGAAAGCCTCACTGCGCCATTTATACTAGACAAGAAAGCGAGGAGCAAAGCGCC
AACAGTGGTCCTAGGATTCGAGTGCTTGGAGAGCACAGCATTTAACGGCATTGCCACGAA
CCTGGTGGTGTACCTGGAGACTCTCCTGCACGGCAGCAATCTCGCGAGCGCGTCCAATGT
CACGACGTGGTTCGGGACGAGCTACCTCACCCCGGTGTTCGGCGCCATCATCGCCGACAC
GTTCTGGGGCAACTACAACACCATCCTCGTCTCCCTCGTCTTCTATCTCCTTGGTATGAT
GCTGGTCACCTTCTCGGCGTTCCTGCCGACCACCGCGCTGTGCACCGTGGTGGGCTCGTC
GTGCCAGCAGCCACTTCTTGGCGCGCAGACCATCGCCTTCCTCGGGCTCTACCTCGTGGC
GTTCGGAAGCGGCGGTGTGCGCGCGGCGCTGCTGCCGTTCGGCGCGGACCAGTTCGACGA
TGACAACACGGCCGACCGCGAGCGCAAGATGTCCTTCTTCAGCTGGTTCTACATCTGCGT
CGACTTCGGGATGATCGTGTCGGGCCTTTTCATCGTGTGGATCCAGCAGAACGTTAGCTG
GGGACTTGGCTTCGGCATCGCCACGGCCTGCATCGCGCTCGCCTTCGGCGGCTTCGTGCT
CGCCACGCCCATGTACAAGCGCCGCATGCCCACAGGCACGCCGATCAAGAGCCTCGCGCA
GGTCGTGGTTGCCGCGTGCCGGAAGGCAAGACTCCGTGTCCCCGCGGACACTACTCTTCT
CTACGAAGTCCATGACAAGATCAACCAGTCGAAGATAGCGCACACCGACCAGTTCGGCTT
TCTTGACAAGGCCGCGGTGGTCATGGAGTCCGACTTGGAAGAGGAATCGAACGACGTCGC
GGCGGATGCCTCGTGGAGGATCTGCACGGTGACGCAGGTCGAGGAGCTCAAGATCCTGCT
GCGGCTATTGCCGATATGGGCGACGAGTATCGTGCTTTCGGCGGCGTACGCGCAGCTGAA
CACGACGTTCGTGCAGCAGGGCGCCGCGATGAACATGCGGATCATGTCGTTCACCATCCC
GCCCGCGTCGATGGTGTCCTTCGAGGTGCTCTGCGTCCTGGCATGGGTTCTCATGTACAG
CTCCGTGATCGTGCCCATGCTCAACAGCTTATCCCTGGCCAACGGCGAGCCGTCGCAGCT
GCAGCGGATGGGCGCGGGGCGGCTGCTCATGGCGTTCGCGATGGCCGTCGCGGCGCTGGT
GGAGATGATGCGGCTGGACGCGGCGGGGCGCGGCGAGTCCCTGAGCATCGCGTGGCAGAT
GCCGCAGTACTTCGCGCTGGCCGGCGCGGAGGTGTTCTGCTACATCGCGCAGCTGGAGTT
CTTCTACAGCGAGGCGCCGGAGTCCATGAAGAGCATGTGCACGTCCCTGGCGCTGCTCAC
CGTGGCGCTGGGAAGCTACATGAGCTCATTCATCTACGCCGTCGTGAACGCGTTCACCGC
CGTGGACGGGCGGCCCGGGTGGATATCGGACAACCTCAACGAAGGACACATGGACTACTT
CTTCTGGGTCATGGCGGCGCTGTGCACGCTCAACTTCGTCGTGTACAGCGCGTTCGCCCG
GACCTACAGGGTGAAGCTGGTCGTGTCGTGATTGTTCGTTACTCCCTTACCATGATCAGG
TTACACGCAATCGTGGTCGTATTGTGTTACAGAAGAATCTTGTACTCCTAGCTAGCAATA
GCGACAGCCGACAGTATGTGTAAAGTTCAAGGAAAAAAAACAAGGTTTGATGGGCTGACA
GCCCAGCAGCTTCCTTT