Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0596400-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:30081085:30084173:-1 gene:Os04g0596400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UPF0195 protein CG30152. (Os04t0596400-01)
Sequence

ATGGTTGTGGGGTTAATAAATGCTAACCCTGTAGTTTATGAGAAAAAAGAGAGGCGTTCT
CGGCAGGCACCAGAAACCACAGATGAAAATGCGGCAGAGGCTATTGACCAGCTAGAAATA
TTTGATCATATTAGAGACATAAAGGATCCAGAGCACCCATACTCACTCGAAGAGCTTAAT
GTTGTAACTGAGGATTCAGTTGAAATCAATGATGAACTTAGTCATGTCAGGGTTACTTTT
ACCCCAACAGTGGAGCGTTGCAGTATGGCGACCGTCATTGGACTTTGCCTGCGTGTGAAA
CTTATGCGGAGTCTTCCCCCTCGATACAAGGTGGACATAAGGGTGGCGCCTGGATCACAT
GCAACTGAAACTGCAGTGAACAAGCAACTGAACGACAAAGAACGTGTTGCAGCTGCTCTG
GAAAATCCAAACCTTCTGGACATTGTTGAGGAGTGCTTGTCACCAACGTTTGCTTGA

Peptide Sequence

PEP ID

Os04t0596400-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:30081085:30084173:-1 gene:Os04g0596400 transcript:Os04t0596400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UPF0195 protein CG30152. (Os04t0596400-01)
Sequence

MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELN
VVTEDSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGSH
ATETAVNKQLNDKERVAAALENPNLLDIVEECLSPTFA

Transcript Sequence

Transcript ID

Os04t0596400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:30081085:30084173:-1 gene:Os04g0596400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UPF0195 protein CG30152. (Os04t0596400-01)
Sequence

AAGCAGACGAGCCCACGGCCGCCGACGCCGCCCGCCGCCGGACTTCGCCGGAATTTCGCC
ATTCTGATATAAATTAGTGCATTGCATCAGAAAAATGGTTGTGGGGTTAATAAATGCTAA
CCCTGTAGTTTATGAGAAAAAAGAGAGGCGTTCTCGGCAGGCACCAGAAACCACAGATGA
AAATGCGGCAGAGGCTATTGACCAGCTAGAAATATTTGATCATATTAGAGACATAAAGGA
TCCAGAGCACCCATACTCACTCGAAGAGCTTAATGTTGTAACTGAGGATTCAGTTGAAAT
CAATGATGAACTTAGTCATGTCAGGGTTACTTTTACCCCAACAGTGGAGCGTTGCAGTAT
GGCGACCGTCATTGGACTTTGCCTGCGTGTGAAACTTATGCGGAGTCTTCCCCCTCGATA
CAAGGTGGACATAAGGGTGGCGCCTGGATCACATGCAACTGAAACTGCAGTGAACAAGCA
ACTGAACGACAAAGAACGTGTTGCAGCTGCTCTGGAAAATCCAAACCTTCTGGACATTGT
TGAGGAGTGCTTGTCACCAACGTTTGCTTGAGACCTGAATACAAGTATACAACTGGGAGC
CTGTGTGTTGAAATGTTTCAAAACTACACTGAATTACCCTACGACGTGTAGCATGACCTT
GTCATTTGAGATACCTTATGTGGTGCAGGGCGTGTGCATGAATTTTGATGGTCTGTACCT
TTCTATAAGGATACTACTGCTCTACCGTTTCATACCTTTTTTCTTTTTATGGCCTGTGAC
CTGCCAGAGCATAATTGAAACGATATAAGGAAATACTCGTATATGAAGTATATTGCGCTG
TAGGCTTTTTACCTCTCGAATATGAAGTACTGTCTGGATGTCAATATCCATGAAAAGAAA
CTGAAGGATATTCCATGATTTTATGCCATCTCTGTAATTATATCAGGTTGCTCTTGAACT