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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0590100-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:29827885:29828919:1 gene:Os04g0590100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal-associated domain, HMA domain containing protein. (Os04t0590100-00)
Sequence

CACAGTTCACGCAGTTCCCAGGTGTTCAGAGAGGTGAAATTGGATGGAGGAAAGGTGACA
GTGAAGGGCATCGGCTTCGACGCCGAGAAGCTCAGGAAGAAGGTCGAGAAGGGATGCCGG
AGGAGAGTTGAGCTGGTGCCTCCTCCCAAGGACATAGTCACTGAGGTCAAGAGCAAGAAG
GAGGAACTGAAGATCATCACTGTAAGGGTTCCCTTGCATTGCGCAGAGTGCGCAGCCAGG
GTCAAAGAGGTTCTACTTGAGCACAAAAGCATTTACGCGGCTAAGATTGACCTTGGGAAG
AACTTGTGTGTCGTCGAGGGGGTGATTGAGGAGAAGAAACTCTTTGAATACATCTACCAT
AGAACGCGCAAGTACGGCTTCATCGAAAAGGTTGAGAAGAAGGAGATCATTGTGGAAGAG
AAGGTTGAGGTGAAGAAGAAGGAAGCTGAGAAGAAGAAGGAAGGCGAGAAGAAGGAGGAG
GTCAAGGTGAAGGAGAAGGTCAAGGAGGTCGTTGCTCCCTACTTCATCCCCTGCACGCAC
CCTCACTTCATCGATTACTCACACCCTGAACTCCATGGATTCAAGGACACGGTTTTCTTG
CATTGCTCACACTCTAATCAGTTCCTCAGTAACGAAAACCCGGAAGCCTGCTCTGTGATG
TAG

Peptide Sequence

PEP ID

Os04t0590100-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:29827885:29828919:1 gene:Os04g0590100 transcript:Os04t0590100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal-associated domain, HMA domain containing protein. (Os04t0590100-00)
Sequence

HSSRSSQVFREVKLDGGKVTVKGIGFDAEKLRKKVEKGCRRRVELVPPPKDIVTEVKSKK
EELKIITVRVPLHCAECAARVKEVLLEHKSIYAAKIDLGKNLCVVEGVIEEKKLFEYIYH
RTRKYGFIEKVEKKEIIVEEKVEVKKKEAEKKKEGEKKEEVKVKEKVKEVVAPYFIPCTH
PHFIDYSHPELHGFKDTVFLHCSHSNQFLSNENPEACSVM

Transcript Sequence

Transcript ID

Os04t0590100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:29827885:29828919:1 gene:Os04g0590100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal-associated domain, HMA domain containing protein. (Os04t0590100-00)
Sequence

AGCTGGTGACGGCCGTGTACAAGGTGCACGTCCACTGCAAGCAGTGCGCGAACACCATCG
TGACACAGTTCACGCAGTTCCCAGGTGTTCAGAGAGGTGAAATTGGATGGAGGAAAGGTG
ACAGTGAAGGGCATCGGCTTCGACGCCGAGAAGCTCAGGAAGAAGGTCGAGAAGGGATGC
CGGAGGAGAGTTGAGCTGGTGCCTCCTCCCAAGGACATAGTCACTGAGGTCAAGAGCAAG
AAGGAGGAACTGAAGATCATCACTGTAAGGGTTCCCTTGCATTGCGCAGAGTGCGCAGCC
AGGGTCAAAGAGGTTCTACTTGAGCACAAAAGCATTTACGCGGCTAAGATTGACCTTGGG
AAGAACTTGTGTGTCGTCGAGGGGGTGATTGAGGAGAAGAAACTCTTTGAATACATCTAC
CATAGAACGCGCAAGTACGGCTTCATCGAAAAGGTTGAGAAGAAGGAGATCATTGTGGAA
GAGAAGGTTGAGGTGAAGAAGAAGGAAGCTGAGAAGAAGAAGGAAGGCGAGAAGAAGGAG
GAGGTCAAGGTGAAGGAGAAGGTCAAGGAGGTCGTTGCTCCCTACTTCATCCCCTGCACG
CACCCTCACTTCATCGATTACTCACACCCTGAACTCCATGGATTCAAGGACACGGTTTTC
TTGCATTGCTCACACTCTAATCAGTTCCTCAGTAACGAAAACCCGGAAGCCTGCTCTGTG
ATGTAG