Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0585100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:29556896:29563246:-1 gene:Os04g0585100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os04t0585100-01)
Sequence

ATGGCGCGGCGTCACGGGTGGCAGCTCCCCGCCCACACCCTGCAGGTGGTAGCTATAACG
GTGTTCTTCTTGTTGTGTATAGAATTCTATGCTTTCTTTTCACCATTTCTTGGGAAGGAC
TTGTATCAATTTATCGCAATAGGTGTTTATAGTTTTCTGGCCTTATCAGTACTGATTCTA
TATGTAAGATGTACTGCTATTGATCCTGCTGACCCTGGAATCATGATTACTGTCAACGGT
GCTCTAACCTATAAGTCAGAAGCAAAATTAGACACACAAGACGAAACGGGCAAATCAGAA
TCGAGAACCTATGAGGATGTCCAAAAGCACAAATCATGTTTAGGAGCTGGTTGTTTGTGT
TGTGCTATATTTGTGAAAGAGGATTGTCGCAAAGATGACGAAGCTTACCAACAAGAAGAT
TATGATGAAGAGGCACTCTTTTGCACCCTTTGCAATGCAGAGGTGCGGAAAAATAGTAAA
CATTGTCGGAGTTGTGACAAATGTGTTGATGGTTTTGATCATCATTGCCGGTGGCTGAAC
AATTGTGTTGGAAGAAAAAACTATGTCACATTTCTGTGCCTTATGGCTGTGAGCCTTGCT
TGGCTTGCTGTTGAGTCCGGAGTTGGTATTGCTGTTTTTGTCCGTTGCTTCACTGACAAA
GCAGCTATTGAAGATCAGATAGGGGAAAAGCTGGGGTATGGTCTTTCACGAGCACTCTTT
GCAGCTATTGGGGCCCTGGGTACAGCTCTTTCAATGCTTGCTTCAGTGCCACTTGGGGAG
CTATTCTTCTTCCATATGATATTAATCCGGAAGGGCATCACAACTTATGAATATGTTGTG
GCAATGAGGGCTCAGAGTGAACCTCCTGGTCCTTCTGTCAATGATGAACAACAAAGCCTG
CCATCATCTCCCATGAGTTCTGCACCGACTGCTTTCAGTGGGAGCTCATTTGCACGGCAC
TACAAAGGTGCGTGGTGCACTCCACCACGCATATTTATTGACCAGGATGAAATCATCCCA
CACCTGCAACCTGGACGAGTGCCTTCAACTGTTGATCCTGATAGCATGAACCCGACTGAA
AGAGCCAAACATTATCCTAAACGTCCCGTGCGCATTAGCGCATGGAAGCTTGCAAAACTG
GATTCAAACGAGGCCATGAAAGCAGCAGCAAGAGCCAGAGCCTCTTCATCTGTGCTTAAA
CCGGTCAATACCCGTGCCCAATACGAGGCAGACCGGTGTTCCAGTGATAATACCAGCTGC
AGAAGCAGTGTCATGAGTGTTGATATTGGAAACCACATCAACAGTCGGTCTGTCCGGAAT
TCTCAATACAAGTCCTCTTATCCACCCAGCAGAGCAAGTGCAGATGACATTGAGCTGTAT
CCCCAGACACCAAGTAGCTTTCAAAGCAACTCTCAGACTCCAACACCGATTTCAGAGCAC
CATCCTGCAAAGCATTTCAATCCAATTTATCAGACATCAGCAAACAGGTCTCCATTCTCA
GCAGTAGCAAGTGGTGTCAATGAAGCGTCTGTCTCAGATATCAGCACAAGGAGGTTTGGT
GCATCGAACGCAGACAGATCTTCTCGTTCATCTGTTTACTGGGATCAGGAAGCTGGCCGC
TTCGTCTCTTCCCAGGCAAACCATGGATCCAGCTCTCGTTTGCCCCGTAGTGACCTTCTT
TACACTGGACAGTCTATATTCTTTGGTGGACCTCTGATGACAGATCCTGCAACAAGAAGT
TTCAGAGATCCTGGCGGTTCGAGCCAACGCGCTGGTGCTTCTCGGCCGCATCAGCTCCCC
GTGTTCGTTCCTAGTGATCCCCAGAAAGATCGTTTCTCTAGGCTACCTTGA

Peptide Sequence

PEP ID

Os04t0585100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:29556896:29563246:-1 gene:Os04g0585100 transcript:Os04t0585100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os04t0585100-01)
Sequence

MARRHGWQLPAHTLQVVAITVFFLLCIEFYAFFSPFLGKDLYQFIAIGVYSFLALSVLIL
YVRCTAIDPADPGIMITVNGALTYKSEAKLDTQDETGKSESRTYEDVQKHKSCLGAGCLC
CAIFVKEDCRKDDEAYQQEDYDEEALFCTLCNAEVRKNSKHCRSCDKCVDGFDHHCRWLN
NCVGRKNYVTFLCLMAVSLAWLAVESGVGIAVFVRCFTDKAAIEDQIGEKLGYGLSRALF
AAIGALGTALSMLASVPLGELFFFHMILIRKGITTYEYVVAMRAQSEPPGPSVNDEQQSL
PSSPMSSAPTAFSGSSFARHYKGAWCTPPRIFIDQDEIIPHLQPGRVPSTVDPDSMNPTE
RAKHYPKRPVRISAWKLAKLDSNEAMKAAARARASSSVLKPVNTRAQYEADRCSSDNTSC
RSSVMSVDIGNHINSRSVRNSQYKSSYPPSRASADDIELYPQTPSSFQSNSQTPTPISEH
HPAKHFNPIYQTSANRSPFSAVASGVNEASVSDISTRRFGASNADRSSRSSVYWDQEAGR
FVSSQANHGSSSRLPRSDLLYTGQSIFFGGPLMTDPATRSFRDPGGSSQRAGASRPHQLP
VFVPSDPQKDRFSRLP

Transcript Sequence

Transcript ID

Os04t0585100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:29556896:29563246:-1 gene:Os04g0585100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, DHHC-type domain containing protein. (Os04t0585100-01)
Sequence

AAGTATCCACTCCTCTCCTCTCTCGCCTGACTGGCACAGGCACCAGCGCCGAGAGGGGGA
GAGGCCAGAGGAGGAGAAGCCGTACGTACGGGGGCGCTCGCTAGGGTTTGCCACGCCGCG
CCGCTGACCCCGCGAGGACGTCCCTACCGCCGACGACGCCGCCGCCATGGCGCGGCGTCA
CGGGTGGCAGCTCCCCGCCCACACCCTGCAGGTGGTAGCTATAACGGTGTTCTTCTTGTT
GTGTATAGAATTCTATGCTTTCTTTTCACCATTTCTTGGGAAGGACTTGTATCAATTTAT
CGCAATAGGTGTTTATAGTTTTCTGGCCTTATCAGTACTGATTCTATATGTAAGATGTAC
TGCTATTGATCCTGCTGACCCTGGAATCATGATTACTGTCAACGGTGCTCTAACCTATAA
GTCAGAAGCAAAATTAGACACACAAGACGAAACGGGCAAATCAGAATCGAGAACCTATGA
GGATGTCCAAAAGCACAAATCATGTTTAGGAGCTGGTTGTTTGTGTTGTGCTATATTTGT
GAAAGAGGATTGTCGCAAAGATGACGAAGCTTACCAACAAGAAGATTATGATGAAGAGGC
ACTCTTTTGCACCCTTTGCAATGCAGAGGTGCGGAAAAATAGTAAACATTGTCGGAGTTG
TGACAAATGTGTTGATGGTTTTGATCATCATTGCCGGTGGCTGAACAATTGTGTTGGAAG
AAAAAACTATGTCACATTTCTGTGCCTTATGGCTGTGAGCCTTGCTTGGCTTGCTGTTGA
GTCCGGAGTTGGTATTGCTGTTTTTGTCCGTTGCTTCACTGACAAAGCAGCTATTGAAGA
TCAGATAGGGGAAAAGCTGGGGTATGGTCTTTCACGAGCACTCTTTGCAGCTATTGGGGC
CCTGGGTACAGCTCTTTCAATGCTTGCTTCAGTGCCACTTGGGGAGCTATTCTTCTTCCA
TATGATATTAATCCGGAAGGGCATCACAACTTATGAATATGTTGTGGCAATGAGGGCTCA
GAGTGAACCTCCTGGTCCTTCTGTCAATGATGAACAACAAAGCCTGCCATCATCTCCCAT
GAGTTCTGCACCGACTGCTTTCAGTGGGAGCTCATTTGCACGGCACTACAAAGGTGCGTG
GTGCACTCCACCACGCATATTTATTGACCAGGATGAAATCATCCCACACCTGCAACCTGG
ACGAGTGCCTTCAACTGTTGATCCTGATAGCATGAACCCGACTGAAAGAGCCAAACATTA
TCCTAAACGTCCCGTGCGCATTAGCGCATGGAAGCTTGCAAAACTGGATTCAAACGAGGC
CATGAAAGCAGCAGCAAGAGCCAGAGCCTCTTCATCTGTGCTTAAACCGGTCAATACCCG
TGCCCAATACGAGGCAGACCGGTGTTCCAGTGATAATACCAGCTGCAGAAGCAGTGTCAT
GAGTGTTGATATTGGAAACCACATCAACAGTCGGTCTGTCCGGAATTCTCAATACAAGTC
CTCTTATCCACCCAGCAGAGCAAGTGCAGATGACATTGAGCTGTATCCCCAGACACCAAG
TAGCTTTCAAAGCAACTCTCAGACTCCAACACCGATTTCAGAGCACCATCCTGCAAAGCA
TTTCAATCCAATTTATCAGACATCAGCAAACAGGTCTCCATTCTCAGCAGTAGCAAGTGG
TGTCAATGAAGCGTCTGTCTCAGATATCAGCACAAGGAGGTTTGGTGCATCGAACGCAGA
CAGATCTTCTCGTTCATCTGTTTACTGGGATCAGGAAGCTGGCCGCTTCGTCTCTTCCCA
GGCAAACCATGGATCCAGCTCTCGTTTGCCCCGTAGTGACCTTCTTTACACTGGACAGTC
TATATTCTTTGGTGGACCTCTGATGACAGATCCTGCAACAAGAAGTTTCAGAGATCCTGG
CGGTTCGAGCCAACGCGCTGGTGCTTCTCGGCCGCATCAGCTCCCCGTGTTCGTTCCTAG
TGATCCCCAGAAAGATCGTTTCTCTAGGCTACCTTGAAATAAACTCTTTTTTGGAGTAGT
CTTCTGAAACAATTGTTGCTCTGTTGGTTTATTCAATGTATAGTTCTTACATCAGATCGA
TCGTAGGCTATGATTTTCTTTTTGATATTCAGGTGGAAACTGAGATTAATTTAGGTATTG
ATGATTTTT