Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0583500-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:29485142:29488519:1 gene:Os04g0583500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 10 description:Expansin, Al-inducible expansin, Root cell elongation (Os04t0583500-01);Similar to Expansin-A10. (Os04t0583500-02)
Sequence

ATGGCTCCCTGCCTCCTCCTCGTCCTCTTCCTCCTCCCGGCGCTCGCCACCGGCCACCAG
CACCCGTCCACCCTCGGCTCCTCCGCCCTCTCCGAGTGGCGCTCCGCCAAGGCCTCCTAC
TACGCCGCCGACCCGGAAGACGCCATCGGTGGCGCGTGCGGGTTCGGGGATCTGGGGAAG
CACGGGTACGGGATGGCGACGGTGGGGCTGAGCACGGCGCTGTTCGAGCGCGGCGCGGCG
TGCGGCGGCTGCTACGAGGTGAAGTGCGTGGATGACCTCAAGTACTGCCTCCCCGGAACC
TCCATCGTCGTCACGGCCACCAACTTCTGCGCCCCGAACTTCGGTCTCCCCGCCGACGCC
GGCGGCGTCTGCAACCCGCCCAACCACCATTTCCTCCTCCCCATCCAGTCCTTCGAGAAG
ATTGCGCTCTGGAAGGCCGGCGTGATGCCCATCCAGTACCGCCGGTACGTTCGATTCTTG
GCTGCATCCTTTGATTGCTGCTATCTTTAG

Peptide Sequence

PEP ID

Os04t0583500-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:29485142:29488519:1 gene:Os04g0583500 transcript:Os04t0583500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 10 description:Expansin, Al-inducible expansin, Root cell elongation (Os04t0583500-01);Similar to Expansin-A10. (Os04t0583500-02)
Sequence

MAPCLLLVLFLLPALATGHQHPSTLGSSALSEWRSAKASYYAADPEDAIGGACGFGDLGK
HGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADA
GGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRYVRFLAASFDCCYL

Transcript Sequence

Transcript ID

Os04t0583500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:29485142:29488519:1 gene:Os04g0583500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 10 description:Expansin, Al-inducible expansin, Root cell elongation (Os04t0583500-01);Similar to Expansin-A10. (Os04t0583500-02)
Sequence

ACTATAGCCAAAGCAATTCACACTCGCACGGGCTCGAGACGGCAGCACAGCTCCACTCCA
CTCCACTCTCCCCCACCACACCACACTGCACTGAGGCATACCGACGAACACCTTTGGAGC
CATGGCTCCCTGCCTCCTCCTCGTCCTCTTCCTCCTCCCGGCGCTCGCCACCGGCCACCA
GCACCCGTCCACCCTCGGCTCCTCCGCCCTCTCCGAGTGGCGCTCCGCCAAGGCCTCCTA
CTACGCCGCCGACCCGGAAGACGCCATCGGTGGCGCGTGCGGGTTCGGGGATCTGGGGAA
GCACGGGTACGGGATGGCGACGGTGGGGCTGAGCACGGCGCTGTTCGAGCGCGGCGCGGC
GTGCGGCGGCTGCTACGAGGTGAAGTGCGTGGATGACCTCAAGTACTGCCTCCCCGGAAC
CTCCATCGTCGTCACGGCCACCAACTTCTGCGCCCCGAACTTCGGTCTCCCCGCCGACGC
CGGCGGCGTCTGCAACCCGCCCAACCACCATTTCCTCCTCCCCATCCAGTCCTTCGAGAA
GATTGCGCTCTGGAAGGCCGGCGTGATGCCCATCCAGTACCGCCGGTACGTTCGATTCTT
GGCTGCATCCTTTGATTGCTGCTATCTTTAGTCTACTTTGCACTGGATTCTAGACTAGAT
CTGAGGTTTATGTTTCCCATTTTCTTAATCCACTTTGTGTGGAAATGTGAAAGTGCTTAG
AATTGCGTCGGTTGGTAGAATGTGGGATCCCAGAAAAGCTGAATTATAAGTGGCCGTTGT
GGAGGAAAGGAAATGGGCCGTCTTCCAATACGGTCAACTTCTGTTAGAGCACCCGCAATG
GTAAAGTAAGGTGCTCTCTATAAAACATGTACATCTCAGCAATAGACTAGATTAATAGTA
AACCACCTCAATAGTATGTCTACATGGGTATCTATAGCTCTCTAATGCATTGCCTCGTTT
TTCTCTATAGACTATCTCCAGGTTAGTAGATAGCTTTGCTCTCTCTCTTCATTTAATCTC
TTCAATGTAGGAAAATATGCTGACATAGATATCTTGTAGAGAGCCTATAGATAACCATTG
CGGGTGCCCTTAGGGTTCAGTTGGATAGTTTCATGGTCCTTTATGCTGTAGTGTGTTTAG
GTGTCTAGGTTAGGAGAAAAAAGGGCAGTACTTTTAAAGCCTTCAGCCATTTGATGCACC
ATTTTCGTAAGTACTGTTAGAGTTCTAACTGTTTCAGTTGATTTGCTTCTGGCTCAGCAG
CACAAGAAACTGGTTTCCAAAAAAAAAAAGCAGCACAAGAAACTTGGTGTATGCTTCAGT
TAAAAATTCATATAGTTTGGAATAATATTTTGCTGGTTGGAATTAAAACGATGCAACTTA
CATGCACCATTGATCAGAAAACTAGCAGTAACTTACTATTGTCATCTAAATGTCGCTCGT
GAGAATTCATTTATTCCATTACTCTACTAGTTTAAGGTTGCTAGCTAGAATCCGGAGGCT
GTGAGCTATGGACCTGCAGGTAACAGCAACTCACACCGAATTTATGCAAACAGCCTTCCT
CATATCTGAGTTAGTTTACGAGGTTTTCCCAGGCTAATCCTAATAATCAAGACTCAAAAG
TACACAGTTCTGGGTAATTTCCAGCAGTTTTTTTAATCTGTATCGGTAGGCACTAAGGAA
TGTTAGTCTGCTCCATTACATAGACCGTTTTCCATCACGCTTAATTCCTTTCTGGGGTAC
ATTAGATGTTCCTTTAAGCTTTCAATGACCACTAAGTTAGTCCCACAGGTTGAATTGCTG
CATTATTTGTGGACTGTAGCTGTCCTTAATTTGCTTTCTGTACTAGCAATTTATACCGGT
TGGTATGTCTTTCAAGTCCTTCAATAATTTGATCTGTTATCAAAACTAAAATAGTGTTAA
ACAGATCAGTTCATAGTCAGGCATTATCTTTTCCTGCACTAGATTTTTCTTCACATCTTA
GTGCTCTAGATCTAAATAGGTTACAATCTTCCAGTTGACGTCTGTAAATTAGTGTACGTC
ATTTCTAGTAATATTCAAGAATTAATTTTACGAACCCCCTAATGTGATGCTGAATTAGGT
TGCCTGTATTACTTTCTCAAATATTCTGAGGTATAGTTGAGTAATGCAATATCCATTATG
TGCGTTTAAGTTGGCATCAAATGTGCGTCTAAGTTGGCATCAATTAGATGTTCAACTTCA
AGATGGTTTCCTGAATATCATACTGTCATATTTATGTGCCTATCATACTTCCTCAAGATC
GATGTTCCAGGACATTTTGTAGAGAACATCAACCTGCAGCGCTTTTAAATTATTTCAGGC
TTCACCATATGTTACAGGGCTCAGTTGTTGGCAGGATTTCCATGAGAGTGACAATCTGTT
TGAACGGATTGTTTCACTGAGCAGTGAACCATCACAAGGACAGCTGTACAAGGCTATCAG
TAACATGATAGCCTGTAGATAGAAAGCAAAATTATTGTAGATTGTAAATTGGTCAGCAAA
AATTGTCAATTGTCACTAATCTTGGCGTGTTTAATTTGTATGCAGCGTCAACTGTCTTCG
TGATGGTGGTGTGCGATTCGCAGTCGCTGGTCGAAGCTTCTTCCTGACAGTCCTAATTAG
CAATGTCGGTGGTGCTGGCGATGTCCGATCAGTGAAGATCAAAGGAACGGAGTCCGGTTG
GCTCTCGATGGGCCGCAACTGGGGGCAGATATGGCACATCAACTCTGATTTCAGGGGACA
GCCTCTCTCCTTCGAGCTCACCTCAAGTGATGGAAAAACATTGACCAACTACAACGTGGT
CCCTAAGGAGTGGGACTTCGGCAAAACATACACTGGCAAGCAGTTCCTGCTCTAGAGAGG
AAAGGGTACCAATAGCAGCTTACAGTTACAAATTTTTTTCTGATCCTATGAGTTGGATTG
TACTATTGTATATTCCTCTGAGGAACGATAATAGTATCATTAGAGAAAGAAATGTTTAGT
GCAGAGCCTCCAATAGTAGTCCAACATAGAAAAGGTGCTCATAAATGTGGCATGTACCAT
TTGGAACTCTGATAATTGCACTACAGAGGCTTGATGTACCATTC