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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0579200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:29213355:29214344:-1 gene:Os04g0579200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0579200-01)
Sequence

ATGGGGTTCCCGGTCTGCTGCTACTCCGAGCTGCTGCTCCCCAAGCAGCTGCTCCACCTC
CTCCTGCTGCTCGGCTACATCCGCCGCTTCCTCCTCTGGGCGTTCCACGCCGTCGGCCTC
GGGGACCTGCTGGATCTCGGGGACGAGCAGCAGGCGGTGCTGCAGGACCACGCGCGCGAG
CACCGCGCGCCGGCGCAGGCGCTGCCGCCACAGCAGCAGCACCGCCGCGCCGAGTTCCGG
ACGGTGCCGGCGATGGTCATCGAGGAGGTTCTGCCGGTGGTGCGGTTCGACGAGCTGGTG
GCCGCGGCCCCGGCGGTTTGCGGCGGCGGGGACTGCGCGGTGTGCCTCAGCGGCATCGGC
GGCGGCGACGAGGTGCGCAGGCTCAGCAATTGCCGCCACGTGTTCCACCGGGGCTGCCTG
GACCGCTGGATGGAGCACGACGACCAGCGCACCTGCCCGCTCTGCCGCGCGCCGCTCATC
CCCGACGAGATGGCCAGCGCGCTCTGGGCCGCCGCCGGCGTGCCCGACGCCTCCGACTTC
GACTTCTCCTACTTCGGCGCGCCCCTCACGCCGATGCCCACGCCGACTCTGCTACGGCCG
CACGAGCTGCTGCTCACTGGCCTTGGCGGCTACCAGTAA

Peptide Sequence

PEP ID

Os04t0579200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:29213355:29214344:-1 gene:Os04g0579200 transcript:Os04t0579200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0579200-01)
Sequence

MGFPVCCYSELLLPKQLLHLLLLLGYIRRFLLWAFHAVGLGDLLDLGDEQQAVLQDHARE
HRAPAQALPPQQQHRRAEFRTVPAMVIEEVLPVVRFDELVAAAPAVCGGGDCAVCLSGIG
GGDEVRRLSNCRHVFHRGCLDRWMEHDDQRTCPLCRAPLIPDEMASALWAAAGVPDASDF
DFSYFGAPLTPMPTPTLLRPHELLLTGLGGYQ

Transcript Sequence

Transcript ID

Os04t0579200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:29213355:29214344:-1 gene:Os04g0579200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0579200-01)
Sequence

GTGTGAGCGCGGGAGCACCTCTCCCGACGAGCCTTCCCTTCTCCTCCTCGCCTTCGCGTC
AGCCCGGCATGGGGTTCCCGGTCTGCTGCTACTCCGAGCTGCTGCTCCCCAAGCAGCTGC
TCCACCTCCTCCTGCTGCTCGGCTACATCCGCCGCTTCCTCCTCTGGGCGTTCCACGCCG
TCGGCCTCGGGGACCTGCTGGATCTCGGGGACGAGCAGCAGGCGGTGCTGCAGGACCACG
CGCGCGAGCACCGCGCGCCGGCGCAGGCGCTGCCGCCACAGCAGCAGCACCGCCGCGCCG
AGTTCCGGACGGTGCCGGCGATGGTCATCGAGGAGGTTCTGCCGGTGGTGCGGTTCGACG
AGCTGGTGGCCGCGGCCCCGGCGGTTTGCGGCGGCGGGGACTGCGCGGTGTGCCTCAGCG
GCATCGGCGGCGGCGACGAGGTGCGCAGGCTCAGCAATTGCCGCCACGTGTTCCACCGGG
GCTGCCTGGACCGCTGGATGGAGCACGACGACCAGCGCACCTGCCCGCTCTGCCGCGCGC
CGCTCATCCCCGACGAGATGGCCAGCGCGCTCTGGGCCGCCGCCGGCGTGCCCGACGCCT
CCGACTTCGACTTCTCCTACTTCGGCGCGCCCCTCACGCCGATGCCCACGCCGACTCTGC
TACGGCCGCACGAGCTGCTGCTCACTGGCCTTGGCGGCTACCAGTAACCAGTGAACCGCC
GCTGTTGGTTCACGGAGTTGGCAATATCCACCTACTGCACAGCAGGGCACCGGCGACCCG
GAATGCGCAGTTTTTACAACGACTGAATTGGTCGTCGTGTTCGGGGAAGACCAAGAACAG
GAGGCGCCTTCAACTGTACATAGGCAAAAATGAGTAAAGCAAACCCCCCAAAAAAGGCTA
GATGATTAGTAGATTTTTATTTTTGTTTTTGTTTTTGTACAGAAGATTCCATCTTCCAGG
TTTGAGAAGTAGTGAATCTTTGTGCTGATT