Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0578700-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:29187056:29193576:1 gene:Os04g0578700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0404F02.16 protein. (Os04t0578700-01);Similar to H0404F02.16 protein. (Os04t0578700-02)
Sequence	ATGTCTATGATAGCAGCAACTCTTCGTCGATCGTCTAGAGTAACTGGTAGTCAGAATATC ATGGAGATATGTCTTGGACCTTGTGTATCTTCTGGTGCTTCTTCAAGGTGGTTCAGCAGC TGTACTAAGCACTCAAACACTTCCATACTTAACCAGATCAAGGCAGTTGATCGGTATTCT CCAGTTAATGGTATGTCAATGATCAGTAGGGTGCCTCTTTCAGCTCATATGGACACAAAC TGGTTGTCTACTTCAAATCCCAGATTTAATGCACTGCCAGGATTCTTAGGTGCTTCAAGC ATCTGCCGAGCATACTCCTCAGACACTGGGATTAAGGCAGAAGTTCCACAGAATACTGTC TCAAATGTACCTTCCACAGAAACCGTTGCGCTTGGAACATCTGATGGTGGTAGTTCTTGG ATTGATATCTTCGACAATGCTCGCAAGTGTACTCTAGATGCTACCACTGATGCAGGCAAG AAAGTTAAGGAGCTGACTGATGCAATTACACCTCATGTACAACAGTTCTTTGATGCAAAT CCAAACCTAGAAAAGGTTGTGGTTCCACTTGGCGGGACAATCTTTGGTACAATGATGGCT TGGTTTGTCATGCCTATCGTTTTAAGGAGGATTCACAAGTATTCGATACAGAGTCCTATA TCAGCACTTTTGGGGAGCTCAACAAAGAATGATGTCTCGTATGAAACTAGCCTCTGGAGT GCATTGGAGGATCCTGCGAAATACCTTATCACATTTATGGCATTTTCAGAAATGGCTGGA TTCACCGCACCAAGCATATCAGCTTATCTTCCACAGGCATGGAGGGGTGCAATTGTTCTC TCTTTTGTCTGGTTCCTTCATAGGTGGAAAACAAACTTCATCACTAAAGTTGCTGCCTCA AGTATTGATCAAACCAGGTTGTCAGCATTTGATAAGATCTCGTCATTAGGACTGATTGCA CTTGGAGTAATGGCTCTTGCAGAGGCTTGTGGTGTAGCTGCTCAGTCAATACTAACTGTT GGTGGTGTGGGAGGTGTTGCTACTGCCTTTGCTGCTCGGGATGTCCTTGGTAACATGCTC AGTGGGTTCTCCTTACAGTTTTCTAGTCCATTCAAAGCTGGAGAATACATAAAGGCTGGG TCAATAGAAGGCAAGGTGATTGAAATAGGACTGACTTCTACGGAATTGATGAATCCAGAA CAACTTCCTGTCACTGTACCCAACTCTCTGTTCTCCAGCCAGGTGATAGTGAACAGATCA CGAGCTAAATGGCGATCCAATGTGACAAAGATTCCTATTAGAATTGAGGATATTGAAAAG GTTCCTGCCATATCAGAGGAGATAAAAGTTATGTTAAGGTCCAACCCAAAGGTTGTCTTA GACTCAGAAGCACCAGCTCCTTATTGTTATCTTTCAAGATTGGAAAGTTCATATGGAGAG CTCACCATTGGATGCAACCTCACGAAAATGACAAAGGATGAGTGGCTGTCTACAACACAA GGCATTCTTCTGGAGGCTGCTAAGATTATCAAGTTACATGGCGTTGAACTGGGAAGCACC ACGCAGTGCTGCTGA

Peptide Sequence

PEP ID	Os04t0578700-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:29187056:29193576:1 gene:Os04g0578700 transcript:Os04t0578700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0404F02.16 protein. (Os04t0578700-01);Similar to H0404F02.16 protein. (Os04t0578700-02)
Sequence	MSMIAATLRRSSRVTGSQNIMEICLGPCVSSGASSRWFSSCTKHSNTSILNQIKAVDRYS PVNGMSMISRVPLSAHMDTNWLSTSNPRFNALPGFLGASSICRAYSSDTGIKAEVPQNTV SNVPSTETVALGTSDGGSSWIDIFDNARKCTLDATTDAGKKVKELTDAITPHVQQFFDAN PNLEKVVVPLGGTIFGTMMAWFVMPIVLRRIHKYSIQSPISALLGSSTKNDVSYETSLWS ALEDPAKYLITFMAFSEMAGFTAPSISAYLPQAWRGAIVLSFVWFLHRWKTNFITKVAAS SIDQTRLSAFDKISSLGLIALGVMALAEACGVAAQSILTVGGVGGVATAFAARDVLGNML SGFSLQFSSPFKAGEYIKAGSIEGKVIEIGLTSTELMNPEQLPVTVPNSLFSSQVIVNRS RAKWRSNVTKIPIRIEDIEKVPAISEEIKVMLRSNPKVVLDSEAPAPYCYLSRLESSYGE LTIGCNLTKMTKDEWLSTTQGILLEAAKIIKLHGVELGSTTQCC

Transcript Sequence

Transcript ID	Os04t0578700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:29187056:29193576:1 gene:Os04g0578700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0404F02.16 protein. (Os04t0578700-01);Similar to H0404F02.16 protein. (Os04t0578700-02)
Sequence	AAGAAAGGCCGAAAGCGAAAGCGGATCACAAGGGGGTAGCCCGTCACCATCAGCGCTCAC GCCTCGCGCACCTGCGCTCTCCCTCCCCCTTCCCGGCCTAGGTGTCGGAAGCGCGGTGGG GAGGAAGCGAACGCGCCGCCGTCCGGGTCTCCTCCGCCTCCTCCTCCCGAGAATCGACTT CTATTTTGCCTCTGCATCCAGGTTATTTAGAACTCTGTATTCAGGACTGCACAATGTCTA TGATAGCAGCAACTCTTCGTCGATCGTCTAGAGTAACTGGTAGTCAGAATATCATGGAGA TATGTCTTGGACCTTGTGTATCTTCTGGTGCTTCTTCAAGGTGGTTCAGCAGCTGTACTA AGCACTCAAACACTTCCATACTTAACCAGATCAAGGCAGTTGATCGGTATTCTCCAGTTA ATGGTATGTCAATGATCAGTAGGGTGCCTCTTTCAGCTCATATGGACACAAACTGGTTGT CTACTTCAAATCCCAGATTTAATGCACTGCCAGGATTCTTAGGTGCTTCAAGCATCTGCC GAGCATACTCCTCAGACACTGGGATTAAGGCAGAAGTTCCACAGAATACTGTCTCAAATG TACCTTCCACAGAAACCGTTGCGCTTGGAACATCTGATGGTGGTAGTTCTTGGATTGATA TCTTCGACAATGCTCGCAAGTGTACTCTAGATGCTACCACTGATGCAGGCAAGAAAGTTA AGGAGCTGACTGATGCAATTACACCTCATGTACAACAGTTCTTTGATGCAAATCCAAACC TAGAAAAGGTTGTGGTTCCACTTGGCGGGACAATCTTTGGTACAATGATGGCTTGGTTTG TCATGCCTATCGTTTTAAGGAGGATTCACAAGTATTCGATACAGAGTCCTATATCAGCAC TTTTGGGGAGCTCAACAAAGAATGATGTCTCGTATGAAACTAGCCTCTGGAGTGCATTGG AGGATCCTGCGAAATACCTTATCACATTTATGGCATTTTCAGAAATGGCTGGATTCACCG CACCAAGCATATCAGCTTATCTTCCACAGGCATGGAGGGGTGCAATTGTTCTCTCTTTTG TCTGGTTCCTTCATAGGTGGAAAACAAACTTCATCACTAAAGTTGCTGCCTCAAGTATTG ATCAAACCAGGTTGTCAGCATTTGATAAGATCTCGTCATTAGGACTGATTGCACTTGGAG TAATGGCTCTTGCAGAGGCTTGTGGTGTAGCTGCTCAGTCAATACTAACTGTTGGTGGTG TGGGAGGTGTTGCTACTGCCTTTGCTGCTCGGGATGTCCTTGGTAACATGCTCAGTGGGT TCTCCTTACAGTTTTCTAGTCCATTCAAAGCTGGAGAATACATAAAGGCTGGGTCAATAG AAGGCAAGGTGATTGAAATAGGACTGACTTCTACGGAATTGATGAATCCAGAACAACTTC CTGTCACTGTACCCAACTCTCTGTTCTCCAGCCAGGTGATAGTGAACAGATCACGAGCTA AATGGCGATCCAATGTGACAAAGATTCCTATTAGAATTGAGGATATTGAAAAGGTTCCTG CCATATCAGAGGAGATAAAAGTTATGTTAAGGTCCAACCCAAAGGTTGTCTTAGACTCAG AAGCACCAGCTCCTTATTGTTATCTTTCAAGATTGGAAAGTTCATATGGAGAGCTCACCA TTGGATGCAACCTCACGAAAATGACAAAGGATGAGTGGCTGTCTACAACACAAGGCATTC TTCTGGAGGCTGCTAAGATTATCAAGTTACATGGCGTTGAACTGGGAAGCACCACGCAGT GCTGCTGATTACGGTGCTTTTGGAAGTTCTAAGTAGGTGAATTACGTTAGTCACACTCAA CAGAAGTACATAGGTTGGTGGCTTTGGAACACTTCTAGTGCGAAGGCAAGGACGTCCTTT AGTCTTTTTGGTATCTTCAGATTTCAGACCCTCGACTCCATTGCTTTCTGTTAACCGCGT TTTTTTTAGCTAAGGTCAATTTCCAACTCTCTTTAACTTTCCCTTCGCTTGATATATCAT CCGCTAATAGCCTAACAGAGAGAAGCACTGCCAATGAGCCACGGTAAACATTTTGGTCCG CATGCTGATAATGTGAGCGGGTAGTTTACCCCTGTT